HEADER TRANSFERASE/ANTITOXIN 19-NOV-12 3ZC7 TITLE VBHT FIC PROTEIN FROM BARTONELLA SCHOENBUCHENSIS IN COMPLEX WITH VBHA TITLE 2 ANTITOXIN AND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIC DOMAIN, RESIDUES 1-248; COMPND 5 SYNONYM: AMPYLATOR VBHT, VBHT TOXIN; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ANTITOXIN VBHA; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 1-62; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA SCHOENBUCHENSIS; SOURCE 3 ORGANISM_TAXID: 165694; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSFDUET1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BARTONELLA SCHOENBUCHENSIS; SOURCE 11 ORGANISM_TAXID: 165694; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PRSFDUET1 KEYWDS TRANSFERASE-ANTITOXIN COMPLEX, AMPYLATION, ADENYLYLATION EXPDTA X-RAY DIFFRACTION AUTHOR A.GOEPFERT,T.SCHIRMER REVDAT 3 20-DEC-23 3ZC7 1 REMARK REVDAT 2 05-FEB-14 3ZC7 1 JRNL REVDAT 1 19-JUN-13 3ZC7 0 JRNL AUTH A.GOEPFERT,F.V.STANGER,C.DEHIO,T.SCHIRMER JRNL TITL CONSERVED INHIBITORY MECHANISM AND COMPETENT ATP BINDING JRNL TITL 2 MODE FOR ADENYLYLTRANSFERASES WITH FIC FOLD. JRNL REF PLOS ONE V. 8 64901 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23738009 JRNL DOI 10.1371/JOURNAL.PONE.0064901 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.0002 - 3.7988 1.00 2577 136 0.1580 0.2147 REMARK 3 2 3.7988 - 3.0233 1.00 2529 139 0.1519 0.2057 REMARK 3 3 3.0233 - 2.6435 1.00 2525 125 0.1759 0.2669 REMARK 3 4 2.6435 - 2.4029 1.00 2478 125 0.1679 0.2412 REMARK 3 5 2.4029 - 2.2312 1.00 2503 143 0.1747 0.2548 REMARK 3 6 2.2312 - 2.1001 0.95 2342 147 0.1855 0.2476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 1.00 REMARK 3 B_SOL : 3.35 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2244 REMARK 3 ANGLE : 1.008 3028 REMARK 3 CHIRALITY : 0.071 318 REMARK 3 PLANARITY : 0.004 395 REMARK 3 DIHEDRAL : 17.904 897 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 8 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9951 -41.6060 6.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.3181 T22: 0.1017 REMARK 3 T33: 0.2746 T12: 0.1794 REMARK 3 T13: 0.1480 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 3.2286 L22: 3.0981 REMARK 3 L33: 2.0991 L12: -1.3680 REMARK 3 L13: 1.3627 L23: -0.7505 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: -0.1171 S13: -0.5547 REMARK 3 S21: 0.2423 S22: 0.1695 S23: 0.1265 REMARK 3 S31: 0.6833 S32: 0.1829 S33: -0.0188 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 28 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3772 -28.8543 18.7403 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.1771 REMARK 3 T33: 0.0692 T12: 0.0535 REMARK 3 T13: 0.0012 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 3.3599 L22: 5.2316 REMARK 3 L33: 4.8951 L12: 1.7277 REMARK 3 L13: 0.9070 L23: 0.6760 REMARK 3 S TENSOR REMARK 3 S11: -0.1267 S12: -0.1273 S13: -0.1834 REMARK 3 S21: 0.1861 S22: -0.0473 S23: -0.2668 REMARK 3 S31: 0.2912 S32: 0.1984 S33: 0.1041 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 49 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2199 -22.3987 6.8713 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0878 REMARK 3 T33: 0.0671 T12: -0.0177 REMARK 3 T13: 0.0230 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 4.6226 L22: 2.3351 REMARK 3 L33: 1.5916 L12: -2.2556 REMARK 3 L13: 0.4983 L23: -0.5255 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.0903 S13: 0.2875 REMARK 3 S21: -0.0696 S22: 0.0728 S23: -0.1601 REMARK 3 S31: -0.1192 S32: 0.1627 S33: -0.0589 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 79 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6410 -36.9193 2.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.2046 REMARK 3 T33: 0.2929 T12: -0.1550 REMARK 3 T13: 0.0425 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.9842 L22: 4.0037 REMARK 3 L33: 3.4664 L12: -2.0002 REMARK 3 L13: 2.0159 L23: 1.7779 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.4848 S13: -0.9780 REMARK 3 S21: 0.5178 S22: -0.1009 S23: 0.3736 REMARK 3 S31: 0.5637 S32: -0.5232 S33: 0.0782 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 93 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2740 -17.6642 1.8157 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1925 REMARK 3 T33: 0.1280 T12: 0.0019 REMARK 3 T13: -0.0303 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 1.9650 L22: 2.8271 REMARK 3 L33: 0.8398 L12: -1.9282 REMARK 3 L13: -0.5370 L23: 0.5497 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.2683 S13: 0.0251 REMARK 3 S21: 0.0660 S22: -0.0498 S23: -0.0061 REMARK 3 S31: -0.0709 S32: -0.3951 S33: 0.0307 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 118 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1045 -21.7529 13.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.1037 REMARK 3 T33: 0.0857 T12: 0.0096 REMARK 3 T13: 0.0005 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.2047 L22: 1.0235 REMARK 3 L33: 1.6805 L12: -0.1078 REMARK 3 L13: -0.1919 L23: -0.2724 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: -0.0081 S13: -0.0137 REMARK 3 S21: 0.0999 S22: 0.1183 S23: 0.0377 REMARK 3 S31: -0.1325 S32: -0.3256 S33: -0.0263 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 168 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0114 -33.3456 15.7466 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.1507 REMARK 3 T33: 0.2171 T12: -0.0532 REMARK 3 T13: -0.0017 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 2.2995 L22: 3.1144 REMARK 3 L33: 8.6442 L12: 1.0931 REMARK 3 L13: -0.3392 L23: -1.1308 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0170 S13: -0.1559 REMARK 3 S21: 0.2232 S22: -0.1937 S23: -0.3883 REMARK 3 S31: 0.0947 S32: -0.6692 S33: 0.1952 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 180 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5806 -25.1458 17.1991 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.2333 REMARK 3 T33: 0.1244 T12: 0.0362 REMARK 3 T13: 0.0067 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.8296 L22: 4.1249 REMARK 3 L33: 6.6846 L12: 1.3603 REMARK 3 L13: 0.7347 L23: 4.3604 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.1988 S13: -0.0774 REMARK 3 S21: 0.1682 S22: -0.0942 S23: 0.0946 REMARK 3 S31: 0.2260 S32: -0.6096 S33: 0.1166 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 194 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8402 -5.3149 15.4312 REMARK 3 T TENSOR REMARK 3 T11: 0.5760 T22: 0.4384 REMARK 3 T33: 0.4288 T12: -0.0544 REMARK 3 T13: 0.0573 T23: 0.1445 REMARK 3 L TENSOR REMARK 3 L11: 0.6435 L22: 5.2541 REMARK 3 L33: 5.4100 L12: 1.3788 REMARK 3 L13: -0.9609 L23: -4.8124 REMARK 3 S TENSOR REMARK 3 S11: -0.1638 S12: 0.2338 S13: 0.6124 REMARK 3 S21: 0.1054 S22: -0.0454 S23: -0.3377 REMARK 3 S31: -1.1988 S32: 0.7383 S33: 0.1570 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1430 -19.1655 28.1636 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.0871 REMARK 3 T33: 0.0965 T12: 0.0068 REMARK 3 T13: 0.0079 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 2.6623 L22: 5.8317 REMARK 3 L33: 3.9446 L12: 3.2623 REMARK 3 L13: 2.5402 L23: 3.8354 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: 0.0379 S13: 0.2749 REMARK 3 S21: -0.2313 S22: -0.1393 S23: 0.2980 REMARK 3 S31: -0.2404 S32: 0.2153 S33: 0.2097 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 25 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0126 -26.3003 28.3579 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.2766 REMARK 3 T33: 0.1341 T12: 0.0840 REMARK 3 T13: -0.0220 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 4.1110 L22: 4.3665 REMARK 3 L33: 2.9381 L12: 2.7713 REMARK 3 L13: 1.9377 L23: 2.8165 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: -0.3038 S13: -0.2470 REMARK 3 S21: 0.1848 S22: -0.0128 S23: -0.3264 REMARK 3 S31: 0.3022 S32: 0.4067 S33: -0.0582 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 46 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3877 -30.3040 21.3544 REMARK 3 T TENSOR REMARK 3 T11: 0.1371 T22: 0.5617 REMARK 3 T33: 0.1989 T12: 0.1635 REMARK 3 T13: -0.0331 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.5280 L22: 4.5823 REMARK 3 L33: 2.6559 L12: -3.2725 REMARK 3 L13: 0.4106 L23: -0.8789 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: 0.0531 S13: -0.0333 REMARK 3 S21: -0.0010 S22: -0.0344 S23: -0.2088 REMARK 3 S31: 0.5161 S32: 0.7744 S33: -0.0502 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.89 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3SHG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.1M MES PH 6.5. THEN REMARK 280 SOAKED WITH 5MM ATP AND 5MM MGCL2U. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2084 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2085 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 TYR A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 GLN A 207 REMARK 465 GLY A 208 REMARK 465 ILE A 209 REMARK 465 ASN A 210 REMARK 465 GLU A 211 REMARK 465 ARG A 212 REMARK 465 VAL A 213 REMARK 465 LEU A 214 REMARK 465 SER A 215 REMARK 465 HIS A 216 REMARK 465 ILE A 217 REMARK 465 ASP A 218 REMARK 465 ILE A 219 REMARK 465 ASP A 220 REMARK 465 LYS A 221 REMARK 465 GLU A 222 REMARK 465 TRP A 223 REMARK 465 PRO A 224 REMARK 465 GLN A 225 REMARK 465 LYS A 226 REMARK 465 GLY A 227 REMARK 465 PHE A 228 REMARK 465 ASN A 229 REMARK 465 ILE A 230 REMARK 465 ALA A 231 REMARK 465 ILE A 232 REMARK 465 GLN A 233 REMARK 465 THR A 234 REMARK 465 THR A 235 REMARK 465 GLN A 236 REMARK 465 GLN A 237 REMARK 465 ALA A 238 REMARK 465 PRO A 239 REMARK 465 TYR A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 SER A 243 REMARK 465 TYR A 244 REMARK 465 THR A 245 REMARK 465 ASP A 246 REMARK 465 THR A 247 REMARK 465 SER A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR A 198 REMARK 475 VAL A 199 REMARK 475 ASN A 200 REMARK 475 ARG A 201 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 26 CE NZ REMARK 480 ILE A 51 CG2 REMARK 480 ASP A 86 CB CG OD1 OD2 REMARK 480 LYS A 89 CG CD CE NZ REMARK 480 GLN A 111 CD OE1 NE2 REMARK 480 ARG A 114 NE CZ NH1 NH2 REMARK 480 GLU A 167 CG CD OE1 OE2 REMARK 480 GLN A 169 CG CD OE1 NE2 REMARK 480 GLU A 170 CG CD OE1 OE2 REMARK 480 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 202 N CA CB CG CD NE CZ REMARK 480 ARG A 202 NH1 NH2 REMARK 480 VAL A 203 CB CG1 CG2 REMARK 480 MET B 0 CG SD CE REMARK 480 ILE B 62 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2139 O HOH A 2165 1.89 REMARK 500 O HOH A 2021 O HOH A 2023 1.90 REMARK 500 O HOH A 2114 O HOH A 2117 2.01 REMARK 500 NH1 ARG B 12 O HOH A 2152 2.02 REMARK 500 O HOH A 2046 O HOH A 2055 2.04 REMARK 500 O HOH A 2053 O HOH A 2128 2.04 REMARK 500 OE1 GLU A 97 O HOH A 2109 2.06 REMARK 500 OE2 GLU A 120 O HOH A 2134 2.08 REMARK 500 O HOH A 2104 O HOH A 2105 2.14 REMARK 500 O HOH A 2033 O HOH A 2034 2.15 REMARK 500 OE2 GLU B 45 O HOH B 2017 2.16 REMARK 500 N ARG A 201 O HOH A 2173 2.19 REMARK 500 NH1 ARG A 48 O HOH A 2051 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 -99.14 58.82 REMARK 500 THR A 198 116.14 59.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 6.37 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 300 DBREF 3ZC7 A 1 248 UNP E6Z0R3 VBHT_BARSR 1 248 DBREF 3ZC7 B 1 62 UNP E6Z0R4 VBHA_BARSR 1 62 SEQADV 3ZC7 VAL A 1 UNP E6Z0R3 MET 1 ENGINEERED MUTATION SEQADV 3ZC7 HIS A 249 UNP E6Z0R3 EXPRESSION TAG SEQADV 3ZC7 HIS A 250 UNP E6Z0R3 EXPRESSION TAG SEQADV 3ZC7 HIS A 251 UNP E6Z0R3 EXPRESSION TAG SEQADV 3ZC7 HIS A 252 UNP E6Z0R3 EXPRESSION TAG SEQADV 3ZC7 HIS A 253 UNP E6Z0R3 EXPRESSION TAG SEQADV 3ZC7 HIS A 254 UNP E6Z0R3 EXPRESSION TAG SEQADV 3ZC7 MET B 0 UNP E6Z0R4 CLONING ARTIFACT SEQADV 3ZC7 VAL B 1 UNP E6Z0R4 MET 1 EXPRESSION TAG SEQRES 1 A 254 VAL ARG LYS TYR GLU GLY SER ASN ASP PRO TYR THR ASP SEQRES 2 A 254 PRO GLU THR GLY VAL MET TYR ASN LEU LEU GLY ILE LYS SEQRES 3 A 254 ASP GLN ALA ARG LEU GLU ARG VAL GLU SER ALA PHE ALA SEQRES 4 A 254 TYR ILE ARG SER PHE GLU LEU GLY ARG THR SER ILE SER SEQRES 5 A 254 GLY LYS PHE ASP LEU ASP HIS MET LYS LYS ILE HIS LYS SEQRES 6 A 254 LYS LEU PHE GLY ASP VAL TYR GLU TRP ALA GLY LYS THR SEQRES 7 A 254 ARG LEU VAL ASP ILE VAL LYS ASP ASN SER LYS PHE ALA SEQRES 8 A 254 HIS TYR THR GLN ILE GLU SER TYR ALA PRO GLN ILE THR SEQRES 9 A 254 GLN GLN LEU ALA ARG GLU GLN HIS LEU ARG GLY LEU ASP SEQRES 10 A 254 ALA ASN GLU PHE SER GLN ARG ALA GLY TYR TYR MET GLY SEQRES 11 A 254 GLU LEU ASN ALA LEU HIS PRO PHE ARG GLU GLY ASN GLY SEQRES 12 A 254 ARG THR LEU ARG GLU PHE ILE TRP GLN LEU ALA ARG GLU SEQRES 13 A 254 ALA GLY TYR HIS ILE ASP TRP ASP ARG VAL GLU ARG GLN SEQRES 14 A 254 GLU MET THR ARG ALA SER ILE GLU SER TYR TYR GLY ASN SEQRES 15 A 254 SER ASP LEU MET SER ALA LEU ILE ARG ARG ASN LEU THR SEQRES 16 A 254 GLU PHE THR VAL ASN ARG ARG VAL ASP VAL SER GLN GLY SEQRES 17 A 254 ILE ASN GLU ARG VAL LEU SER HIS ILE ASP ILE ASP LYS SEQRES 18 A 254 GLU TRP PRO GLN LYS GLY PHE ASN ILE ALA ILE GLN THR SEQRES 19 A 254 THR GLN GLN ALA PRO TYR LEU SER SER TYR THR ASP THR SEQRES 20 A 254 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 63 MET VAL LEU SER GLU GLU GLU ILE GLU TYR ARG ARG ARG SEQRES 2 B 63 ASP ALA ARG ASN ALA LEU ALA SER GLN ARG LEU GLU GLY SEQRES 3 B 63 LEU GLU PRO ASP PRO GLN VAL VAL ALA GLN MET GLU ARG SEQRES 4 B 63 VAL VAL VAL GLY GLU LEU GLU THR SER ASP VAL ILE LYS SEQRES 5 B 63 ASP LEU MET GLU ARG ILE LYS ARG GLU GLU ILE HET ATP A 300 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 HOH *226(H2 O) HELIX 1 1 ASP A 27 THR A 49 1 23 HELIX 2 2 ASP A 56 GLY A 69 1 14 HELIX 3 3 HIS A 92 THR A 94 5 3 HELIX 4 4 GLN A 95 GLU A 110 1 16 HELIX 5 5 GLN A 111 ARG A 114 5 4 HELIX 6 6 ASP A 117 HIS A 136 1 20 HELIX 7 7 GLY A 141 ALA A 157 1 17 HELIX 8 8 GLU A 167 TYR A 180 1 14 HELIX 9 9 SER A 183 ARG A 192 1 10 HELIX 10 10 SER B 3 LEU B 23 1 21 HELIX 11 11 ASP B 29 VAL B 41 1 13 HELIX 12 12 GLU B 45 ARG B 59 1 15 SHEET 1 AA 2 VAL A 84 LYS A 85 0 SHEET 2 AA 2 SER A 88 LYS A 89 -1 O SER A 88 N LYS A 85 SHEET 1 AB 2 TYR A 159 ILE A 161 0 SHEET 2 AB 2 LEU A 194 GLU A 196 -1 O THR A 195 N HIS A 160 SITE 1 AC1 15 LYS A 85 SER A 88 ASN A 133 HIS A 136 SITE 2 AC1 15 GLU A 140 GLY A 141 ASN A 142 GLY A 143 SITE 3 AC1 15 ARG A 144 ARG A 147 MET A 171 SER A 175 SITE 4 AC1 15 ILE A 176 HOH A2142 GLU B 24 CRYST1 106.460 40.620 73.740 90.00 121.55 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009393 0.000000 0.005767 0.00000 SCALE2 0.000000 0.024618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015913 0.00000