HEADER OXIDOREDUCTASE 26-NOV-12 3ZDF TITLE STRUCTURE OF GAPDH WITH CP12 PEPTIDE FROM THERMOSYNECHOCOCCUS TITLE 2 ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAPDH; COMPND 5 EC: 1.2.1.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CP12 POLYPEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: C-TERMINAL, RESIDUES 53-75; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 146786; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSETA; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 12 ORGANISM_TAXID: 146786 KEYWDS OXIDOREDUCTASE, CALVIN CYCLE, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.A.R.COTTON,J.W.MURRAY REVDAT 2 20-DEC-23 3ZDF 1 REMARK REVDAT 1 11-DEC-13 3ZDF 0 JRNL AUTH C.A.R.COTTON,J.W.MURRAY JRNL TITL STRUCTURE OF GAPDH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2298 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.332 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5737 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5382 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7818 ; 1.746 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12355 ; 1.029 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 6.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 251 ;38.428 ;24.382 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 927 ;14.839 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.908 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 890 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6543 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1311 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2883 ; 1.286 ; 1.493 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2882 ; 1.286 ; 1.492 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3599 ; 2.162 ; 2.230 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3600 ; 2.162 ; 2.230 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2854 ; 1.578 ; 1.696 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2851 ; 1.578 ; 1.695 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4217 ; 2.588 ; 2.474 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6235 ; 4.422 ;12.130 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6223 ; 4.409 ;12.108 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 337 B 0 337 20624 0.06 0.05 REMARK 3 2 C 55 74 D 55 74 815 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2200 -51.9830 2.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0582 REMARK 3 T33: 0.1767 T12: 0.0382 REMARK 3 T13: -0.0354 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.1986 L22: 3.8182 REMARK 3 L33: 2.5581 L12: 1.4196 REMARK 3 L13: 0.0044 L23: 0.8529 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0966 S13: 0.0433 REMARK 3 S21: -0.1353 S22: -0.0149 S23: 0.1818 REMARK 3 S31: -0.1501 S32: 0.1235 S33: 0.0345 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3800 -53.5340 0.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.0950 REMARK 3 T33: 0.2220 T12: 0.0292 REMARK 3 T13: -0.0971 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.5462 L22: 3.4898 REMARK 3 L33: 3.1906 L12: -1.8370 REMARK 3 L13: -1.9698 L23: 1.3245 REMARK 3 S TENSOR REMARK 3 S11: 0.2573 S12: 0.3355 S13: -0.1948 REMARK 3 S21: -0.0114 S22: -0.2713 S23: -0.1047 REMARK 3 S31: -0.0139 S32: -0.3213 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4150 -39.5210 6.1540 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.1580 REMARK 3 T33: 0.2050 T12: -0.0122 REMARK 3 T13: 0.0125 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 4.6453 L22: 4.7174 REMARK 3 L33: 2.5751 L12: 4.2646 REMARK 3 L13: -2.2357 L23: -0.9826 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: -0.0807 S13: -0.0021 REMARK 3 S21: -0.2780 S22: -0.0639 S23: 0.0858 REMARK 3 S31: -0.1356 S32: -0.0472 S33: 0.1717 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8740 -43.7500 -0.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1175 REMARK 3 T33: 0.2086 T12: 0.0517 REMARK 3 T13: -0.0854 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 20.0992 L22: 9.0087 REMARK 3 L33: 10.4242 L12: 10.6069 REMARK 3 L13: -4.1051 L23: -0.3977 REMARK 3 S TENSOR REMARK 3 S11: -0.3382 S12: 0.6949 S13: 0.0642 REMARK 3 S21: -0.4572 S22: 0.0545 S23: 0.3201 REMARK 3 S31: -0.7969 S32: -0.4503 S33: 0.2838 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6260 -61.9640 9.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.0828 T22: 0.0019 REMARK 3 T33: 0.1804 T12: -0.0002 REMARK 3 T13: -0.0130 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.2988 L22: 0.9550 REMARK 3 L33: 0.5857 L12: -0.4519 REMARK 3 L13: 0.0093 L23: 0.1763 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.0528 S13: -0.1902 REMARK 3 S21: 0.0828 S22: -0.0011 S23: 0.0363 REMARK 3 S31: 0.0812 S32: -0.0027 S33: -0.0290 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1300 -49.0300 21.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0879 REMARK 3 T33: 0.2277 T12: 0.0111 REMARK 3 T13: -0.0309 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.5848 L22: 0.2079 REMARK 3 L33: 0.7707 L12: -0.2242 REMARK 3 L13: -1.0575 L23: 0.0559 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.0262 S13: -0.0697 REMARK 3 S21: 0.0389 S22: 0.0146 S23: 0.0303 REMARK 3 S31: -0.0122 S32: -0.0051 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4170 -49.3300 22.3070 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.0862 REMARK 3 T33: 0.1913 T12: 0.0112 REMARK 3 T13: -0.0172 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.9366 L22: 9.2992 REMARK 3 L33: 4.0142 L12: -2.1580 REMARK 3 L13: -1.6674 L23: 5.4040 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.0278 S13: -0.0365 REMARK 3 S21: 0.1780 S22: 0.1874 S23: 0.1892 REMARK 3 S31: 0.1346 S32: -0.0082 S33: -0.1487 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7380 -54.0410 15.8330 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0451 REMARK 3 T33: 0.2815 T12: 0.0019 REMARK 3 T13: -0.0005 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.0604 L22: 1.7950 REMARK 3 L33: 0.1416 L12: -0.7131 REMARK 3 L13: 0.1983 L23: -0.4963 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: 0.0039 S13: -0.1626 REMARK 3 S21: -0.0072 S22: 0.1199 S23: 0.0494 REMARK 3 S31: 0.0008 S32: -0.0354 S33: -0.0479 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 55.1580 -53.9300 6.3220 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0239 REMARK 3 T33: 0.2936 T12: 0.0117 REMARK 3 T13: 0.0188 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 5.1019 L22: 2.4729 REMARK 3 L33: 1.8676 L12: -0.7901 REMARK 3 L13: 1.1626 L23: -1.7741 REMARK 3 S TENSOR REMARK 3 S11: 0.1767 S12: 0.1610 S13: -0.1205 REMARK 3 S21: -0.1109 S22: -0.1107 S23: -0.3631 REMARK 3 S31: 0.1445 S32: 0.1642 S33: -0.0661 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8580 -49.7910 3.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.1146 REMARK 3 T33: 0.2018 T12: 0.0234 REMARK 3 T13: 0.0140 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.1117 L22: 0.7788 REMARK 3 L33: 0.1645 L12: 0.1875 REMARK 3 L13: 0.0527 L23: -0.0588 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.0771 S13: -0.0228 REMARK 3 S21: -0.0560 S22: 0.0187 S23: -0.0126 REMARK 3 S31: -0.0155 S32: 0.0347 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8280 -17.2650 -6.7220 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1359 REMARK 3 T33: 0.1899 T12: -0.0317 REMARK 3 T13: 0.0624 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.1138 L22: 1.1113 REMARK 3 L33: 1.2378 L12: 0.4388 REMARK 3 L13: 0.5629 L23: -0.3478 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.0152 S13: 0.0547 REMARK 3 S21: -0.1975 S22: 0.1056 S23: -0.0444 REMARK 3 S31: -0.0024 S32: 0.1060 S33: -0.1380 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3220 -20.0080 -14.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1895 REMARK 3 T33: 0.1468 T12: -0.0452 REMARK 3 T13: 0.0067 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 12.3083 L22: 16.3638 REMARK 3 L33: 10.4284 L12: 1.8291 REMARK 3 L13: 1.5058 L23: 5.1876 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.7389 S13: -0.2986 REMARK 3 S21: -0.6497 S22: -0.5338 S23: 1.1770 REMARK 3 S31: 0.2196 S32: 0.0792 S33: 0.5169 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6120 -24.1240 -2.9520 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.1120 REMARK 3 T33: 0.1534 T12: -0.0112 REMARK 3 T13: 0.0399 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.8659 L22: 2.1805 REMARK 3 L33: 0.5965 L12: -0.1504 REMARK 3 L13: 0.7177 L23: -0.1328 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: 0.1436 S13: -0.0287 REMARK 3 S21: -0.2638 S22: -0.0898 S23: 0.0015 REMARK 3 S31: 0.1062 S32: 0.1196 S33: -0.0412 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3580 -20.0220 -8.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.1919 REMARK 3 T33: 0.1813 T12: -0.0381 REMARK 3 T13: 0.0380 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 1.3943 L22: 7.2059 REMARK 3 L33: 3.3630 L12: 0.9173 REMARK 3 L13: -0.0129 L23: -0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.2110 S12: 0.1759 S13: 0.0348 REMARK 3 S21: -0.4750 S22: 0.0698 S23: -0.0368 REMARK 3 S31: 0.2716 S32: 0.2609 S33: 0.1412 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1940 -4.2220 -4.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.0493 REMARK 3 T33: 0.1543 T12: -0.0492 REMARK 3 T13: -0.0011 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 4.1016 L22: 0.9307 REMARK 3 L33: 1.4559 L12: -0.2920 REMARK 3 L13: -0.6729 L23: -0.4396 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: 0.0990 S13: 0.2470 REMARK 3 S21: -0.0257 S22: 0.0956 S23: -0.0134 REMARK 3 S31: -0.1776 S32: 0.0992 S33: -0.0323 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 145 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8950 -6.5510 3.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.0888 REMARK 3 T33: 0.2851 T12: 0.0138 REMARK 3 T13: -0.0084 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 3.4656 L22: 0.1889 REMARK 3 L33: 0.8658 L12: 0.3507 REMARK 3 L13: -1.0539 L23: 0.1777 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.2386 S13: 0.2369 REMARK 3 S21: -0.0605 S22: 0.0252 S23: 0.0642 REMARK 3 S31: -0.1189 S32: -0.0576 S33: -0.0567 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 176 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5970 -16.5060 19.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.1145 REMARK 3 T33: 0.2117 T12: 0.0087 REMARK 3 T13: 0.0571 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 0.2396 L22: 0.8457 REMARK 3 L33: 0.6010 L12: 0.1503 REMARK 3 L13: 0.1259 L23: 0.7085 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.0561 S13: -0.0038 REMARK 3 S21: -0.0349 S22: 0.0692 S23: -0.0060 REMARK 3 S31: -0.0470 S32: 0.0527 S33: -0.0439 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 209 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7030 -9.3000 11.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0509 REMARK 3 T33: 0.2376 T12: -0.0216 REMARK 3 T13: 0.0285 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 1.4994 L22: 3.8205 REMARK 3 L33: 0.5054 L12: -0.9374 REMARK 3 L13: 0.2545 L23: -0.5208 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.0217 S13: 0.2453 REMARK 3 S21: -0.0861 S22: 0.0656 S23: -0.0475 REMARK 3 S31: -0.0515 S32: 0.0952 S33: -0.0463 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 245 B 292 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3640 -18.4720 4.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0404 REMARK 3 T33: 0.1687 T12: -0.0011 REMARK 3 T13: -0.0344 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 2.2639 L22: 1.8226 REMARK 3 L33: 0.9953 L12: -0.5008 REMARK 3 L13: -0.2698 L23: 0.2388 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0997 S13: -0.0439 REMARK 3 S21: -0.1488 S22: 0.0098 S23: 0.1428 REMARK 3 S31: -0.0715 S32: -0.0718 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 293 B 336 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2940 -15.4210 2.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.0675 REMARK 3 T33: 0.2802 T12: -0.0251 REMARK 3 T13: 0.0093 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 1.6991 L22: 0.1189 REMARK 3 L33: 1.2016 L12: 0.3911 REMARK 3 L13: -0.7616 L23: -0.0559 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0973 S13: 0.1240 REMARK 3 S21: -0.0282 S22: 0.0513 S23: 0.0748 REMARK 3 S31: -0.0471 S32: -0.0092 S33: -0.0466 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 100 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8420 -7.2240 15.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.0923 REMARK 3 T33: 0.1857 T12: -0.0870 REMARK 3 T13: 0.0391 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 7.8794 L22: 3.1998 REMARK 3 L33: 11.0653 L12: 0.1019 REMARK 3 L13: 3.9872 L23: 0.6603 REMARK 3 S TENSOR REMARK 3 S11: -0.1463 S12: -0.0589 S13: 0.1772 REMARK 3 S21: -0.3869 S22: 0.1730 S23: -0.1635 REMARK 3 S31: -1.1839 S32: 0.7002 S33: -0.0267 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 100 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8830 -54.3250 28.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.1431 T22: 0.0844 REMARK 3 T33: 0.1935 T12: -0.0483 REMARK 3 T13: -0.0430 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 8.1681 L22: 5.1578 REMARK 3 L33: 12.9864 L12: -0.0714 REMARK 3 L13: -5.6633 L23: 2.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.1345 S12: -0.6900 S13: -0.3417 REMARK 3 S21: 0.3333 S22: -0.1802 S23: 0.1859 REMARK 3 S31: 0.9509 S32: 0.0912 S33: 0.0457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 3ZDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33680 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 63.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.610 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.53 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZCX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 9, 10 % W/V PEG REMARK 280 20,000/ 2% V/V DIOXANE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.69500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.72500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.04250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.72500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.34750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.72500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.04250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.72500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.72500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.34750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.69500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2050 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2051 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2047 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 MET B -16 REMARK 465 ARG B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 HIS C 53 REMARK 465 LYS C 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 81 OD2 ASP C 66 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 198 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 198 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 18 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 18 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 198 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 198 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 199 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 199 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 288 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 57.67 -100.17 REMARK 500 ASP A 64 -160.64 -126.55 REMARK 500 PRO A 87 45.11 -83.41 REMARK 500 PHE A 103 60.92 -111.01 REMARK 500 ASN A 129 46.75 -104.62 REMARK 500 ASN A 138 15.94 -144.96 REMARK 500 ALA A 152 -159.95 63.11 REMARK 500 VAL A 241 134.13 85.03 REMARK 500 THR A 269 -93.57 -133.02 REMARK 500 PHE B 9 58.40 -99.65 REMARK 500 ASP B 64 -164.13 -126.76 REMARK 500 PRO B 87 43.63 -81.87 REMARK 500 PHE B 103 60.51 -111.66 REMARK 500 ASN B 138 14.98 -143.22 REMARK 500 ALA B 152 -159.87 63.77 REMARK 500 VAL B 241 130.90 84.27 REMARK 500 THR B 269 -94.02 -129.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZCX RELATED DB: PDB REMARK 900 STRUCTURE OF GAPDH FROM THERMOSYNECHOCOCCUS ELONGATUS DBREF 3ZDF A 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 DBREF 3ZDF B 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 DBREF 3ZDF C 53 75 UNP Q8DHX3 Q8DHX3_THEEB 53 75 DBREF 3ZDF D 53 75 UNP Q8DHX3 Q8DHX3_THEEB 53 75 SEQADV 3ZDF MET A -16 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF ARG A -15 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF GLY A -14 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF SER A -13 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS A -12 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS A -11 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS A -10 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS A -9 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS A -8 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS A -7 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF GLY A -6 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF LEU A -5 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF VAL A -4 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF PRO A -3 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF ARG A -2 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF GLY A -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF SER A 0 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF MET B -16 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF ARG B -15 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF GLY B -14 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF SER B -13 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS B -12 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS B -11 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS B -10 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS B -9 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS B -8 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF HIS B -7 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF GLY B -6 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF LEU B -5 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF VAL B -4 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF PRO B -3 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF ARG B -2 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF GLY B -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 3ZDF SER B 0 UNP Q8DIW5 EXPRESSION TAG SEQRES 1 A 354 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 354 PRO ARG GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE SEQRES 3 A 354 GLY ARG ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN SEQRES 4 A 354 ARG LYS ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN SEQRES 5 A 354 ASP THR SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS SEQRES 6 A 354 TYR ASP SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE SEQRES 7 A 354 THR ALA ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA SEQRES 8 A 354 VAL LYS CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO SEQRES 9 A 354 TRP SER ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR SEQRES 10 A 354 GLY VAL PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SEQRES 11 A 354 SER ALA GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY SEQRES 12 A 354 LYS GLY ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS SEQRES 13 A 354 HIS THR TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SEQRES 14 A 354 SER CYS THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL SEQRES 15 A 354 LEU HIS GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR SEQRES 16 A 354 THR THR HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP SEQRES 17 A 354 ALA SER HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA SEQRES 18 A 354 MET ASN ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA SEQRES 19 A 354 VAL GLY LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN SEQRES 20 A 354 GLY ILE ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL SEQRES 21 A 354 VAL ASP PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA SEQRES 22 A 354 GLU GLN VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR SEQRES 23 A 354 THR MET LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU SEQRES 24 A 354 VAL SER SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE SEQRES 25 A 354 LEU ASP ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU SEQRES 26 A 354 VAL LYS VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SEQRES 27 A 354 SER GLN ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA SEQRES 28 A 354 HIS TRP ALA SEQRES 1 B 354 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 B 354 PRO ARG GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE SEQRES 3 B 354 GLY ARG ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN SEQRES 4 B 354 ARG LYS ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN SEQRES 5 B 354 ASP THR SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS SEQRES 6 B 354 TYR ASP SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE SEQRES 7 B 354 THR ALA ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA SEQRES 8 B 354 VAL LYS CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO SEQRES 9 B 354 TRP SER ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR SEQRES 10 B 354 GLY VAL PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SEQRES 11 B 354 SER ALA GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY SEQRES 12 B 354 LYS GLY ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS SEQRES 13 B 354 HIS THR TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SEQRES 14 B 354 SER CYS THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL SEQRES 15 B 354 LEU HIS GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR SEQRES 16 B 354 THR THR HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP SEQRES 17 B 354 ALA SER HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA SEQRES 18 B 354 MET ASN ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA SEQRES 19 B 354 VAL GLY LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN SEQRES 20 B 354 GLY ILE ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL SEQRES 21 B 354 VAL ASP PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA SEQRES 22 B 354 GLU GLN VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR SEQRES 23 B 354 THR MET LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU SEQRES 24 B 354 VAL SER SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE SEQRES 25 B 354 LEU ASP ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU SEQRES 26 B 354 VAL LYS VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SEQRES 27 B 354 SER GLN ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA SEQRES 28 B 354 HIS TRP ALA SEQRES 1 C 23 HIS LYS THR SER PHE GLN GLN TYR CYS ASP ASP ASN PRO SEQRES 2 C 23 ASP ALA ALA GLU CYS ARG ILE TYR ASP ASP SEQRES 1 D 23 HIS LYS THR SER PHE GLN GLN TYR CYS ASP ASP ASN PRO SEQRES 2 D 23 ASP ALA ALA GLU CYS ARG ILE TYR ASP ASP HET NAD A1001 44 HET NAD B1001 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *141(H2 O) HELIX 1 1 GLY A 10 ARG A 23 1 14 HELIX 2 2 LYS A 24 SER A 27 5 4 HELIX 3 3 ASP A 39 TYR A 49 1 11 HELIX 4 4 ASN A 82 LEU A 86 5 5 HELIX 5 5 PRO A 87 GLY A 92 1 6 HELIX 6 6 SER A 105 SER A 110 1 6 HELIX 7 7 SER A 110 ALA A 115 1 6 HELIX 8 8 ASN A 138 TYR A 142 5 5 HELIX 9 9 SER A 153 GLY A 171 1 19 HELIX 10 10 GLY A 213 ILE A 222 1 10 HELIX 11 11 PRO A 223 GLN A 226 5 4 HELIX 12 12 ILE A 255 THR A 269 1 15 HELIX 13 13 VAL A 283 ARG A 288 5 6 HELIX 14 14 SER A 299 THR A 301 5 3 HELIX 15 15 GLU A 318 ALA A 334 1 17 HELIX 16 16 GLY B 10 ARG B 23 1 14 HELIX 17 17 LYS B 24 SER B 27 5 4 HELIX 18 18 ASP B 39 TYR B 49 1 11 HELIX 19 19 ASN B 82 LEU B 86 5 5 HELIX 20 20 SER B 105 ALA B 115 1 11 HELIX 21 21 ASN B 138 TYR B 142 5 5 HELIX 22 22 SER B 153 GLY B 171 1 19 HELIX 23 23 ALA B 202 ASN B 206 5 5 HELIX 24 24 GLY B 213 ILE B 222 1 10 HELIX 25 25 PRO B 223 GLN B 226 5 4 HELIX 26 26 ILE B 255 THR B 269 1 15 HELIX 27 27 VAL B 283 ARG B 288 5 6 HELIX 28 28 SER B 299 THR B 301 5 3 HELIX 29 29 GLU B 318 HIS B 335 1 18 HELIX 30 30 THR C 55 ASN C 64 1 10 HELIX 31 31 THR D 55 ASN D 64 1 10 SHEET 1 AA 8 ILE A 61 ALA A 63 0 SHEET 2 AA 8 CYS A 67 ALA A 70 -1 O TYR A 69 N THR A 62 SHEET 3 AA 8 HIS A 73 VAL A 78 -1 O HIS A 73 N ALA A 70 SHEET 4 AA 8 LEU A 29 ASN A 35 1 O VAL A 32 N LYS A 76 SHEET 5 AA 8 VAL A 2 ASN A 7 1 O VAL A 2 N GLU A 30 SHEET 6 AA 8 LEU A 95 GLU A 98 1 O LEU A 95 N ALA A 5 SHEET 7 AA 8 LYS A 119 ILE A 122 1 O LYS A 119 N VAL A 96 SHEET 8 AA 8 ILE A 148 SER A 150 1 O VAL A 149 N ILE A 122 SHEET 1 AB 6 VAL A 208 SER A 211 0 SHEET 2 AB 6 LEU A 229 VAL A 236 -1 O ALA A 233 N THR A 210 SHEET 3 AB 6 ILE A 172 SER A 182 1 O GLY A 175 N ASN A 230 SHEET 4 AB 6 SER A 242 VAL A 250 -1 O VAL A 243 N THR A 180 SHEET 5 AB 6 LEU A 308 TYR A 315 -1 O VAL A 309 N ALA A 248 SHEET 6 AB 6 MET A 302 LEU A 304 1 O MET A 302 N LYS A 310 SHEET 1 AC 7 VAL A 208 SER A 211 0 SHEET 2 AC 7 LEU A 229 VAL A 236 -1 O ALA A 233 N THR A 210 SHEET 3 AC 7 ILE A 172 SER A 182 1 O GLY A 175 N ASN A 230 SHEET 4 AC 7 SER A 242 VAL A 250 -1 O VAL A 243 N THR A 180 SHEET 5 AC 7 LEU A 308 TYR A 315 -1 O VAL A 309 N ALA A 248 SHEET 6 AC 7 SER A 294 ASP A 297 -1 O ILE A 295 N TRP A 314 SHEET 7 AC 7 ILE A 275 SER A 278 1 O HIS A 276 N LEU A 296 SHEET 1 AD 2 MET A 302 LEU A 304 0 SHEET 2 AD 2 LEU A 308 TYR A 315 1 O LEU A 308 N LEU A 304 SHEET 1 BA 8 ILE B 61 ALA B 63 0 SHEET 2 BA 8 CYS B 67 ALA B 70 -1 O TYR B 69 N THR B 62 SHEET 3 BA 8 HIS B 73 VAL B 78 -1 O HIS B 73 N ALA B 70 SHEET 4 BA 8 LEU B 29 ASN B 35 1 O VAL B 32 N LYS B 76 SHEET 5 BA 8 VAL B 2 ASN B 7 1 O VAL B 2 N GLU B 30 SHEET 6 BA 8 LEU B 95 GLU B 98 1 O LEU B 95 N ALA B 5 SHEET 7 BA 8 LYS B 119 ILE B 122 1 O LYS B 119 N VAL B 96 SHEET 8 BA 8 ILE B 148 SER B 150 1 O VAL B 149 N ILE B 122 SHEET 1 BB 6 VAL B 208 SER B 211 0 SHEET 2 BB 6 LEU B 229 VAL B 236 -1 O ALA B 233 N THR B 210 SHEET 3 BB 6 ILE B 172 SER B 182 1 O GLY B 175 N ASN B 230 SHEET 4 BB 6 SER B 242 VAL B 250 -1 O VAL B 243 N THR B 180 SHEET 5 BB 6 LEU B 308 TYR B 315 -1 O VAL B 309 N ALA B 248 SHEET 6 BB 6 MET B 302 LEU B 304 1 O MET B 302 N LYS B 310 SHEET 1 BC 7 VAL B 208 SER B 211 0 SHEET 2 BC 7 LEU B 229 VAL B 236 -1 O ALA B 233 N THR B 210 SHEET 3 BC 7 ILE B 172 SER B 182 1 O GLY B 175 N ASN B 230 SHEET 4 BC 7 SER B 242 VAL B 250 -1 O VAL B 243 N THR B 180 SHEET 5 BC 7 LEU B 308 TYR B 315 -1 O VAL B 309 N ALA B 248 SHEET 6 BC 7 SER B 294 ASP B 297 -1 O ILE B 295 N TRP B 314 SHEET 7 BC 7 ILE B 275 SER B 278 1 O HIS B 276 N LEU B 296 SHEET 1 BD 2 MET B 302 LEU B 304 0 SHEET 2 BD 2 LEU B 308 TYR B 315 1 O LEU B 308 N LEU B 304 SSBOND 1 CYS C 61 CYS C 70 1555 1555 2.06 SSBOND 2 CYS D 61 CYS D 70 1555 1555 2.07 SITE 1 AC1 28 GLY A 8 PHE A 9 GLY A 10 ARG A 11 SITE 2 AC1 28 ILE A 12 ASN A 35 ASP A 36 THR A 37 SITE 3 AC1 28 ARG A 81 ALA A 99 THR A 100 GLY A 101 SITE 4 AC1 28 PHE A 103 THR A 123 ALA A 124 CYS A 154 SITE 5 AC1 28 ASN A 317 TYR A 321 HOH A2001 HOH A2002 SITE 6 AC1 28 HOH A2003 HOH A2033 HOH A2067 HOH A2070 SITE 7 AC1 28 HOH B2037 ASP D 66 ARG D 71 TYR D 73 SITE 1 AC2 30 HOH A2038 HOH A2039 GLY B 8 PHE B 9 SITE 2 AC2 30 GLY B 10 ARG B 11 ILE B 12 ASN B 35 SITE 3 AC2 30 ASP B 36 THR B 37 ARG B 81 ALA B 99 SITE 4 AC2 30 THR B 100 GLY B 101 PHE B 103 THR B 123 SITE 5 AC2 30 ALA B 124 CYS B 154 ASN B 317 TYR B 321 SITE 6 AC2 30 HOH B2002 HOH B2003 HOH B2029 HOH B2065 SITE 7 AC2 30 HOH B2068 HOH B2069 HOH B2070 ASP C 66 SITE 8 AC2 30 ARG C 71 TYR C 73 CRYST1 141.450 141.450 77.390 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012922 0.00000 MTRIX1 1 -0.930300 0.060630 0.361700 54.82000 1 MTRIX2 1 0.075630 -0.933300 0.350900 -68.97000 1 MTRIX3 1 0.358900 0.353800 0.863700 2.53300 1 MTRIX1 2 -0.936300 0.053500 0.347000 55.12000 1 MTRIX2 2 0.081200 -0.928500 0.362200 -69.35000 1 MTRIX3 2 0.341600 0.367400 0.865000 3.36600 1