HEADER HYDROLASE 27-NOV-12 3ZDJ TITLE ANCESTRAL (ENCA) BETA-LACTAMASE CLASS A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENCA BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RESURRECTED SEQUENCE, ANCESTRAL RECONSTRUCTED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET24 KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,V.A.RISSO,J.M.SANCHEZ-RUIZ REVDAT 5 20-DEC-23 3ZDJ 1 REMARK REVDAT 4 06-MAR-19 3ZDJ 1 REMARK REVDAT 3 27-MAR-13 3ZDJ 1 JRNL REVDAT 2 27-FEB-13 3ZDJ 1 ATOM ANISOU REVDAT 1 20-FEB-13 3ZDJ 0 JRNL AUTH V.A.RISSO,J.A.GAVIRA,D.F.MEJIA-CARMONA,E.A.GAUCHER, JRNL AUTH 2 J.M.SANCHEZ-RUIZ JRNL TITL HYPERSTABILITY AND SUBSTRATE PROMISCUITY IN LABORATORY JRNL TITL 2 RESURRECTIONS OF PRECAMBRIAN BETA-LACTAMASES. JRNL REF J.AM.CHEM.SOC. V. 135 2899 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23394108 JRNL DOI 10.1021/JA311630A REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1364 - 6.2856 0.96 2562 147 0.1395 0.1527 REMARK 3 2 6.2856 - 4.9908 1.00 2675 139 0.1421 0.1545 REMARK 3 3 4.9908 - 4.3604 1.00 2658 152 0.1043 0.1194 REMARK 3 4 4.3604 - 3.9619 1.00 2645 140 0.1082 0.1273 REMARK 3 5 3.9619 - 3.6781 1.00 2690 143 0.1309 0.1250 REMARK 3 6 3.6781 - 3.4613 1.00 2657 125 0.1332 0.1680 REMARK 3 7 3.4613 - 3.2880 1.00 2672 147 0.1518 0.1947 REMARK 3 8 3.2880 - 3.1449 1.00 2693 129 0.1795 0.1966 REMARK 3 9 3.1449 - 3.0238 1.00 2672 127 0.1911 0.2003 REMARK 3 10 3.0238 - 2.9195 1.00 2635 175 0.2061 0.2104 REMARK 3 11 2.9195 - 2.8282 1.00 2703 124 0.2089 0.2473 REMARK 3 12 2.8282 - 2.7474 1.00 2645 153 0.2233 0.2381 REMARK 3 13 2.7474 - 2.6751 1.00 2681 139 0.2245 0.2536 REMARK 3 14 2.6751 - 2.6098 1.00 2679 152 0.2299 0.2610 REMARK 3 15 2.6098 - 2.5505 1.00 2645 141 0.2331 0.2641 REMARK 3 16 2.5505 - 2.4962 1.00 2687 146 0.2493 0.3003 REMARK 3 17 2.4962 - 2.4463 1.00 2681 133 0.2565 0.2796 REMARK 3 18 2.4463 - 2.4001 1.00 2674 157 0.2751 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4285 REMARK 3 ANGLE : 1.296 5851 REMARK 3 CHIRALITY : 0.072 682 REMARK 3 PLANARITY : 0.006 768 REMARK 3 DIHEDRAL : 15.834 1631 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 25 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.2670 65.6720 -66.1179 REMARK 3 T TENSOR REMARK 3 T11: 0.3155 T22: 0.3430 REMARK 3 T33: 0.3117 T12: -0.0403 REMARK 3 T13: 0.1875 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.6583 L22: 2.6749 REMARK 3 L33: 1.9369 L12: 0.3776 REMARK 3 L13: -0.8350 L23: 1.7885 REMARK 3 S TENSOR REMARK 3 S11: 0.1503 S12: -0.2427 S13: 0.2757 REMARK 3 S21: 0.4807 S22: -0.1264 S23: 0.3217 REMARK 3 S31: 0.1614 S32: -0.0325 S33: 0.0518 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 40 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.9077 68.9378 -80.2135 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.3009 REMARK 3 T33: 0.3065 T12: 0.0604 REMARK 3 T13: 0.1314 T23: 0.0865 REMARK 3 L TENSOR REMARK 3 L11: 0.9094 L22: 1.2839 REMARK 3 L33: 0.4102 L12: 0.0728 REMARK 3 L13: 0.0789 L23: -0.0411 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.1220 S13: 0.1902 REMARK 3 S21: 0.1056 S22: 0.1647 S23: 0.3099 REMARK 3 S31: -0.0668 S32: -0.1820 S33: -0.0750 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.7340 78.6232 -90.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.2451 T22: 0.2799 REMARK 3 T33: 0.2071 T12: -0.1092 REMARK 3 T13: 0.0630 T23: 0.1311 REMARK 3 L TENSOR REMARK 3 L11: 0.7417 L22: 0.9657 REMARK 3 L33: 0.9248 L12: -0.0898 REMARK 3 L13: 0.0270 L23: 0.1396 REMARK 3 S TENSOR REMARK 3 S11: 0.3563 S12: -0.1014 S13: 0.3803 REMARK 3 S21: -0.1288 S22: -0.0249 S23: -0.0729 REMARK 3 S31: -0.6687 S32: 0.4598 S33: -0.1355 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 99 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.8087 88.7861 -79.4861 REMARK 3 T TENSOR REMARK 3 T11: 0.5661 T22: 0.3217 REMARK 3 T33: 0.3232 T12: -0.1718 REMARK 3 T13: -0.0159 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 3.5552 L22: 3.0206 REMARK 3 L33: 1.8116 L12: -0.3853 REMARK 3 L13: -1.1033 L23: 0.3720 REMARK 3 S TENSOR REMARK 3 S11: 0.2673 S12: -0.7335 S13: 0.6616 REMARK 3 S21: 0.7026 S22: 0.0142 S23: -0.4838 REMARK 3 S31: -0.6583 S32: 0.4791 S33: -0.1779 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 119 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.9199 79.2849 -87.4436 REMARK 3 T TENSOR REMARK 3 T11: 0.2074 T22: 0.1727 REMARK 3 T33: 0.2283 T12: 0.0387 REMARK 3 T13: 0.0498 T23: 0.0792 REMARK 3 L TENSOR REMARK 3 L11: 1.0944 L22: 1.3020 REMARK 3 L33: 1.4141 L12: 0.6071 REMARK 3 L13: -0.4220 L23: -0.0822 REMARK 3 S TENSOR REMARK 3 S11: 0.0922 S12: 0.0635 S13: 0.2525 REMARK 3 S21: 0.1170 S22: -0.0258 S23: 0.2135 REMARK 3 S31: -0.3516 S32: -0.1303 S33: -0.0565 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 196 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.2213 68.2276 -77.6625 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.1624 REMARK 3 T33: 0.1357 T12: 0.0196 REMARK 3 T13: 0.0324 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 2.0750 L22: 0.8203 REMARK 3 L33: 2.0988 L12: 0.0090 REMARK 3 L13: -0.8885 L23: -0.0516 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.1791 S13: -0.0061 REMARK 3 S21: 0.2863 S22: -0.0396 S23: 0.0310 REMARK 3 S31: 0.0704 S32: 0.1288 S33: 0.0662 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 259 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.4472 75.4921 -74.0166 REMARK 3 T TENSOR REMARK 3 T11: 0.2824 T22: 0.1907 REMARK 3 T33: 0.3088 T12: 0.1141 REMARK 3 T13: 0.1279 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.9303 L22: 2.1695 REMARK 3 L33: 2.8804 L12: -0.0936 REMARK 3 L13: 0.0138 L23: 0.8642 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.1250 S13: 0.4660 REMARK 3 S21: 0.4924 S22: 0.0090 S23: 0.3082 REMARK 3 S31: -0.3911 S32: -0.2984 S33: 0.0720 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 272 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.8333 68.9371 -67.3051 REMARK 3 T TENSOR REMARK 3 T11: 0.3213 T22: 0.2846 REMARK 3 T33: 0.1914 T12: 0.0021 REMARK 3 T13: 0.0985 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.8115 L22: 8.5007 REMARK 3 L33: 1.0679 L12: 1.0302 REMARK 3 L13: 0.0832 L23: -0.0665 REMARK 3 S TENSOR REMARK 3 S11: 0.2167 S12: -0.2464 S13: 0.1405 REMARK 3 S21: 0.9640 S22: -0.3268 S23: 0.0833 REMARK 3 S31: 0.0481 S32: -0.1276 S33: 0.0957 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 25 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.0510 72.9062-119.6584 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.2638 REMARK 3 T33: 0.1861 T12: -0.1208 REMARK 3 T13: -0.0203 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 1.2607 L22: 1.5134 REMARK 3 L33: 1.1015 L12: -0.0562 REMARK 3 L13: 0.1235 L23: 0.0661 REMARK 3 S TENSOR REMARK 3 S11: -0.1357 S12: 0.2856 S13: 0.0100 REMARK 3 S21: -0.3789 S22: 0.1620 S23: 0.0788 REMARK 3 S31: -0.1036 S32: 0.0330 S33: -0.0346 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 99 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.3366 67.1456-120.0949 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.2519 REMARK 3 T33: 0.1449 T12: -0.1190 REMARK 3 T13: -0.0096 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.1005 L22: 2.3862 REMARK 3 L33: 1.0276 L12: 0.8506 REMARK 3 L13: -0.4977 L23: -0.4881 REMARK 3 S TENSOR REMARK 3 S11: -0.2665 S12: 0.4047 S13: -0.1952 REMARK 3 S21: -0.4450 S22: 0.3084 S23: 0.0747 REMARK 3 S31: 0.1204 S32: 0.0031 S33: -0.0287 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MET AT POSITION 25 IS A PURIFICATION REMARK 3 ARTEFACT REMARK 4 REMARK 4 3ZDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 297 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER X8 PROTEUM REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.17 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.93 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QPN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COUNTER-DIFFUSION, 2M LI-SULPHATE, REMARK 280 0.1M NA-HEPES PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.24067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.48133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.24067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.48133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CD CE NZ REMARK 470 ARG A 98 NE CZ NH1 NH2 REMARK 470 GLU A 274 CD OE1 OE2 REMARK 470 LYS B 34 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 26 O HOH A 2001 1.26 REMARK 500 H GLY A 175 O HOH A 2051 1.41 REMARK 500 HG1 THR B 182 O HOH B 2017 1.58 REMARK 500 O HOH A 2016 O HOH A 2017 1.94 REMARK 500 O HOH B 2072 O HOH B 2073 2.08 REMARK 500 N GLY A 175 O HOH A 2051 2.10 REMARK 500 ND1 HIS A 26 O HOH A 2001 2.10 REMARK 500 OE1 GLU A 288 O HOH A 2001 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 69 -142.11 48.77 REMARK 500 TYR A 105 75.19 55.90 REMARK 500 LEU A 220 -120.19 -106.38 REMARK 500 SER A 271 161.84 -49.47 REMARK 500 SER A 271 162.77 -49.47 REMARK 500 MET B 69 -146.73 48.62 REMARK 500 TYR B 105 78.23 63.93 REMARK 500 TYR B 105 78.23 66.56 REMARK 500 LEU B 220 -124.80 -101.16 REMARK 500 SER B 258 -38.46 -131.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B2086 DISTANCE = 7.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1292 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B88 RELATED DB: PDB REMARK 900 ANCESTRAL (GNCA) BETA-LACTAMASE CLASS A REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE NUMBERING IS BASED ON R.P.AMBLER ET AL. (BIOCHEM. J., V. REMARK 999 276, P. 269, 1991). DBREF 3ZDJ A 25 290 PDB 3ZDJ 3ZDJ 25 290 DBREF 3ZDJ B 25 290 PDB 3ZDJ 3ZDJ 25 290 SEQRES 1 A 263 MET HIS PRO GLN THR LEU GLU GLN ILE LYS GLU SER GLU SEQRES 2 A 263 SER GLN LEU SER GLY ARG VAL GLY MET VAL GLU LEU ASP SEQRES 3 A 263 LEU ALA SER GLY ARG THR LEU SER TYR ARG ALA ASP GLU SEQRES 4 A 263 ARG PHE PRO MET MET SER THR PHE LYS VAL LEU LEU CYS SEQRES 5 A 263 GLY ALA VAL LEU ALA ARG VAL ASP ALA GLY LEU GLU GLN SEQRES 6 A 263 LEU ASP ARG ARG ILE HIS TYR ARG GLN GLN ASP LEU VAL SEQRES 7 A 263 GLU TYR SER PRO VAL THR GLU LYS HIS LEU ALA ASP GLY SEQRES 8 A 263 MET THR VAL ALA GLU LEU CYS ALA ALA ALA ILE THR MET SEQRES 9 A 263 SER ASP ASN THR ALA ALA ASN LEU LEU LEU ALA THR ILE SEQRES 10 A 263 GLY GLY PRO ALA GLY LEU THR ALA PHE LEU ARG ASN ILE SEQRES 11 A 263 GLY ASP ASN VAL THR ARG LEU ASP ARG TRP GLU THR GLU SEQRES 12 A 263 LEU ASN GLU ALA LEU PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 A 263 THR PRO ALA ALA MET ALA ALA THR LEU ARG LYS LEU LEU SEQRES 14 A 263 THR GLY GLU ILE LEU SER ALA ALA SER ARG GLN GLN LEU SEQRES 15 A 263 ILE THR TRP MET VAL ALA ASP LYS VAL ALA GLY PRO LEU SEQRES 16 A 263 LEU ARG SER VAL LEU PRO ALA GLY TRP PHE ILE ALA ASP SEQRES 17 A 263 LYS THR GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE SEQRES 18 A 263 ALA VAL LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL SEQRES 19 A 263 VAL ILE TYR LEU THR GLU THR GLN ALA SER MET ASP GLU SEQRES 20 A 263 ARG ASN GLN GLN ILE ALA GLU ILE GLY ALA ALA LEU ILE SEQRES 21 A 263 GLU HIS TRP SEQRES 1 B 263 MET HIS PRO GLN THR LEU GLU GLN ILE LYS GLU SER GLU SEQRES 2 B 263 SER GLN LEU SER GLY ARG VAL GLY MET VAL GLU LEU ASP SEQRES 3 B 263 LEU ALA SER GLY ARG THR LEU SER TYR ARG ALA ASP GLU SEQRES 4 B 263 ARG PHE PRO MET MET SER THR PHE LYS VAL LEU LEU CYS SEQRES 5 B 263 GLY ALA VAL LEU ALA ARG VAL ASP ALA GLY LEU GLU GLN SEQRES 6 B 263 LEU ASP ARG ARG ILE HIS TYR ARG GLN GLN ASP LEU VAL SEQRES 7 B 263 GLU TYR SER PRO VAL THR GLU LYS HIS LEU ALA ASP GLY SEQRES 8 B 263 MET THR VAL ALA GLU LEU CYS ALA ALA ALA ILE THR MET SEQRES 9 B 263 SER ASP ASN THR ALA ALA ASN LEU LEU LEU ALA THR ILE SEQRES 10 B 263 GLY GLY PRO ALA GLY LEU THR ALA PHE LEU ARG ASN ILE SEQRES 11 B 263 GLY ASP ASN VAL THR ARG LEU ASP ARG TRP GLU THR GLU SEQRES 12 B 263 LEU ASN GLU ALA LEU PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 B 263 THR PRO ALA ALA MET ALA ALA THR LEU ARG LYS LEU LEU SEQRES 14 B 263 THR GLY GLU ILE LEU SER ALA ALA SER ARG GLN GLN LEU SEQRES 15 B 263 ILE THR TRP MET VAL ALA ASP LYS VAL ALA GLY PRO LEU SEQRES 16 B 263 LEU ARG SER VAL LEU PRO ALA GLY TRP PHE ILE ALA ASP SEQRES 17 B 263 LYS THR GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE SEQRES 18 B 263 ALA VAL LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL SEQRES 19 B 263 VAL ILE TYR LEU THR GLU THR GLN ALA SER MET ASP GLU SEQRES 20 B 263 ARG ASN GLN GLN ILE ALA GLU ILE GLY ALA ALA LEU ILE SEQRES 21 B 263 GLU HIS TRP HET SO4 A1291 5 HET SO4 A1292 5 HET SO4 B1291 5 HET SO4 B1292 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *171(H2 O) HELIX 1 1 GLN A 28 SER A 41 1 14 HELIX 2 2 THR A 71 ALA A 86 1 16 HELIX 3 3 ARG A 98 LEU A 102 5 5 HELIX 4 4 VAL A 108 LEU A 113 5 6 HELIX 5 5 VAL A 119 MET A 129 1 11 HELIX 6 6 ASP A 131 ILE A 142 1 12 HELIX 7 7 GLY A 143 ILE A 155 1 13 HELIX 8 8 THR A 167 GLU A 171 5 5 HELIX 9 9 THR A 182 GLY A 196 1 15 HELIX 10 10 SER A 200 ALA A 213 1 14 HELIX 11 11 LEU A 220 LEU A 225 5 6 HELIX 12 12 SER A 271 HIS A 289 1 19 HELIX 13 13 GLN B 28 SER B 41 1 14 HELIX 14 14 THR B 71 ALA B 86 1 16 HELIX 15 15 ARG B 98 LEU B 102 5 5 HELIX 16 16 VAL B 108 HIS B 112 5 5 HELIX 17 17 VAL B 119 MET B 129 1 11 HELIX 18 18 ASP B 131 THR B 141 1 11 HELIX 19 19 GLY B 143 ILE B 155 1 13 HELIX 20 20 THR B 167 GLU B 171 5 5 HELIX 21 21 THR B 182 GLY B 196 1 15 HELIX 22 22 SER B 200 ALA B 213 1 14 HELIX 23 23 LEU B 220 LEU B 225 5 6 HELIX 24 24 SER B 271 HIS B 289 1 19 SHEET 1 AA 5 THR A 56 TYR A 60 0 SHEET 2 AA 5 ARG A 43 ASP A 50 -1 O MET A 46 N TYR A 60 SHEET 3 AA 5 ARG A 259 THR A 266 -1 O ILE A 260 N LEU A 49 SHEET 4 AA 5 SER A 243 GLY A 251 -1 O ARG A 244 N LEU A 265 SHEET 5 AA 5 PHE A 230 GLY A 238 -1 O PHE A 230 N GLY A 251 SHEET 1 AB 2 PHE A 66 PRO A 67 0 SHEET 2 AB 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AC 2 ARG A 94 ILE A 95 0 SHEET 2 AC 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 BA 5 THR B 56 TYR B 60 0 SHEET 2 BA 5 ARG B 43 ASP B 50 -1 O MET B 46 N TYR B 60 SHEET 3 BA 5 ARG B 259 THR B 266 -1 O ILE B 260 N LEU B 49 SHEET 4 BA 5 SER B 243 GLY B 251 -1 O ARG B 244 N LEU B 265 SHEET 5 BA 5 PHE B 230 GLY B 238 -1 O PHE B 230 N GLY B 251 SHEET 1 BB 2 PHE B 66 PRO B 67 0 SHEET 2 BB 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 BC 2 ARG B 94 ILE B 95 0 SHEET 2 BC 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95 CISPEP 1 GLU A 166 THR A 167 0 9.97 CISPEP 2 GLU B 166 THR B 167 0 -1.17 SITE 1 AC1 2 ARG B 98 HOH B2036 SITE 1 AC2 9 SER B 70 SER B 130 VAL B 216 LYS B 234 SITE 2 AC2 9 THR B 235 GLY B 236 ALA B 237 ARG B 244 SITE 3 AC2 9 HOH B2021 SITE 1 AC3 8 SER A 70 SER A 130 LYS A 234 THR A 235 SITE 2 AC3 8 GLY A 236 ALA A 237 ARG A 244 HOH A2022 SITE 1 AC4 3 ARG A 244 MET A 272 ASN A 276 CRYST1 111.144 111.144 93.722 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008997 0.005195 0.000000 0.00000 SCALE2 0.000000 0.010389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010670 0.00000