data_3ZE5 # _entry.id 3ZE5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZE5 pdb_00003ze5 10.2210/pdb3ze5/pdb PDBE EBI-54706 ? ? WWPDB D_1290054706 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2013-05-29 3 'Structure model' 1 2 2013-06-05 4 'Structure model' 1 3 2019-03-06 5 'Structure model' 1 4 2019-04-03 6 'Structure model' 1 5 2023-03-29 7 'Structure model' 1 6 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Experimental preparation' 8 6 'Structure model' 'Database references' 9 6 'Structure model' Other 10 6 'Structure model' 'Structure summary' 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 5 'Structure model' exptl_crystal_grow 5 6 'Structure model' audit_author 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_database_status 8 7 'Structure model' chem_comp_atom 9 7 'Structure model' chem_comp_bond 10 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_exptl_crystal_grow.temp' 4 6 'Structure model' '_audit_author.identifier_ORCID' 5 6 'Structure model' '_database_2.pdbx_DOI' 6 6 'Structure model' '_database_2.pdbx_database_accession' 7 6 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZE5 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-12-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZE3 unspecified 'CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL KINASE - DELTA7' PDB 3ZE4 unspecified 'CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL KINASE - WILD-TYPE' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, D.' 1 ? 'Vogeley, L.' 2 ? 'Pye, V.E.' 3 ? 'Lyons, J.A.' 4 ? 'Aragao, D.' 5 0000-0002-6551-4657 'Caffrey, M.' 6 ? # _citation.id primary _citation.title 'Crystal Structure of the Integral Membrane Diacylglycerol Kinase.' _citation.journal_abbrev Nature _citation.journal_volume 497 _citation.page_first 521 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23676677 _citation.pdbx_database_id_DOI 10.1038/NATURE12179 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.' 1 ? primary 'Lyons, J.A.' 2 ? primary 'Pye, V.E.' 3 ? primary 'Vogeley, L.' 4 ? primary 'Aragao, D.' 5 ? primary 'Kenyon, C.P.' 6 ? primary 'Shah, S.T.A.' 7 ? primary 'Doherty, C.' 8 ? primary 'Aherne, M.' 9 ? primary 'Caffrey, M.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'DIACYLGLYCEROL KINASE' _entity.formula_weight 14240.527 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec 2.7.1.107 _entity.pdbx_mutation YES _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DAGK, DIGLYCERIDE KINASE, DGK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHHHHHHELANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELL NSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSHFG ; _entity_poly.pdbx_seq_one_letter_code_can ;GHHHHHHELANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELL NSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSHFG ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLU n 1 9 LEU n 1 10 ALA n 1 11 ASN n 1 12 ASN n 1 13 THR n 1 14 THR n 1 15 GLY n 1 16 PHE n 1 17 THR n 1 18 ARG n 1 19 ILE n 1 20 ILE n 1 21 LYS n 1 22 ALA n 1 23 ALA n 1 24 GLY n 1 25 TYR n 1 26 SER n 1 27 TRP n 1 28 LYS n 1 29 GLY n 1 30 LEU n 1 31 ARG n 1 32 ALA n 1 33 ALA n 1 34 TRP n 1 35 ILE n 1 36 ASN n 1 37 GLU n 1 38 ALA n 1 39 ALA n 1 40 PHE n 1 41 ARG n 1 42 GLN n 1 43 GLU n 1 44 GLY n 1 45 VAL n 1 46 ALA n 1 47 VAL n 1 48 LEU n 1 49 LEU n 1 50 ALA n 1 51 VAL n 1 52 VAL n 1 53 ILE n 1 54 ALA n 1 55 CYS n 1 56 TRP n 1 57 LEU n 1 58 ASP n 1 59 VAL n 1 60 ASP n 1 61 ALA n 1 62 CYS n 1 63 THR n 1 64 ARG n 1 65 VAL n 1 66 LEU n 1 67 LEU n 1 68 ILE n 1 69 SER n 1 70 SER n 1 71 VAL n 1 72 MET n 1 73 LEU n 1 74 VAL n 1 75 MET n 1 76 ILE n 1 77 VAL n 1 78 GLU n 1 79 LEU n 1 80 LEU n 1 81 ASN n 1 82 SER n 1 83 ALA n 1 84 ILE n 1 85 GLU n 1 86 ALA n 1 87 VAL n 1 88 VAL n 1 89 ASP n 1 90 ARG n 1 91 ILE n 1 92 GLY n 1 93 SER n 1 94 GLU n 1 95 TYR n 1 96 HIS n 1 97 GLU n 1 98 LEU n 1 99 SER n 1 100 GLY n 1 101 ARG n 1 102 ALA n 1 103 LYS n 1 104 ASP n 1 105 LEU n 1 106 GLY n 1 107 SER n 1 108 ALA n 1 109 ALA n 1 110 VAL n 1 111 LEU n 1 112 ILE n 1 113 ALA n 1 114 ILE n 1 115 ILE n 1 116 ASP n 1 117 ALA n 1 118 VAL n 1 119 ILE n 1 120 THR n 1 121 TRP n 1 122 CYS n 1 123 ILE n 1 124 LEU n 1 125 LEU n 1 126 TRP n 1 127 SER n 1 128 HIS n 1 129 PHE n 1 130 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI K-12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain WH1061 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PTRCHISB _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTRCHISB-DGKA_DELTA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ;THE GENE WAS SYNTHESIZED BASED ON THE DGKA NUCLEOTIDE SEQUENCE OF ESCHERICHIA COLI K12, WITH ADDITIONAL NUCLEOTIDES ENCODING HIS TAG SEQUENCES AT THE N- TERMINUS. SITE-DIRECTED MUTATIONS WERE MADE USING PCR. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -8 ? ? ? A . n A 1 2 HIS 2 -7 ? ? ? A . n A 1 3 HIS 3 -6 ? ? ? A . n A 1 4 HIS 4 -5 ? ? ? A . n A 1 5 HIS 5 -4 ? ? ? A . n A 1 6 HIS 6 -3 ? ? ? A . n A 1 7 HIS 7 -2 ? ? ? A . n A 1 8 GLU 8 -1 ? ? ? A . n A 1 9 LEU 9 0 ? ? ? A . n A 1 10 ALA 10 1 ? ? ? A . n A 1 11 ASN 11 2 ? ? ? A . n A 1 12 ASN 12 3 ? ? ? A . n A 1 13 THR 13 4 ? ? ? A . n A 1 14 THR 14 5 ? ? ? A . n A 1 15 GLY 15 6 ? ? ? A . n A 1 16 PHE 16 7 7 PHE PHE A . n A 1 17 THR 17 8 8 THR THR A . n A 1 18 ARG 18 9 9 ARG ARG A . n A 1 19 ILE 19 10 10 ILE ILE A . n A 1 20 ILE 20 11 11 ILE ILE A . n A 1 21 LYS 21 12 12 LYS LYS A . n A 1 22 ALA 22 13 13 ALA ALA A . n A 1 23 ALA 23 14 14 ALA ALA A . n A 1 24 GLY 24 15 15 GLY GLY A . n A 1 25 TYR 25 16 16 TYR TYR A . n A 1 26 SER 26 17 17 SER SER A . n A 1 27 TRP 27 18 18 TRP TRP A . n A 1 28 LYS 28 19 19 LYS LYS A . n A 1 29 GLY 29 20 20 GLY GLY A . n A 1 30 LEU 30 21 21 LEU LEU A . n A 1 31 ARG 31 22 22 ARG ARG A . n A 1 32 ALA 32 23 23 ALA ALA A . n A 1 33 ALA 33 24 24 ALA ALA A . n A 1 34 TRP 34 25 25 TRP TRP A . n A 1 35 ILE 35 26 26 ILE ILE A . n A 1 36 ASN 36 27 27 ASN ASN A . n A 1 37 GLU 37 28 28 GLU GLU A . n A 1 38 ALA 38 29 29 ALA ALA A . n A 1 39 ALA 39 30 30 ALA ALA A . n A 1 40 PHE 40 31 31 PHE PHE A . n A 1 41 ARG 41 32 32 ARG ARG A . n A 1 42 GLN 42 33 33 GLN GLN A . n A 1 43 GLU 43 34 34 GLU GLU A . n A 1 44 GLY 44 35 35 GLY GLY A . n A 1 45 VAL 45 36 36 VAL VAL A . n A 1 46 ALA 46 37 37 ALA ALA A . n A 1 47 VAL 47 38 38 VAL VAL A . n A 1 48 LEU 48 39 39 LEU LEU A . n A 1 49 LEU 49 40 40 LEU LEU A . n A 1 50 ALA 50 41 41 ALA ALA A . n A 1 51 VAL 51 42 42 VAL VAL A . n A 1 52 VAL 52 43 43 VAL VAL A . n A 1 53 ILE 53 44 44 ILE ILE A . n A 1 54 ALA 54 45 45 ALA ALA A . n A 1 55 CYS 55 46 46 CYS CYS A . n A 1 56 TRP 56 47 47 TRP TRP A . n A 1 57 LEU 57 48 48 LEU LEU A . n A 1 58 ASP 58 49 49 ASP ASP A . n A 1 59 VAL 59 50 50 VAL VAL A . n A 1 60 ASP 60 51 51 ASP ASP A . n A 1 61 ALA 61 52 52 ALA ALA A . n A 1 62 CYS 62 53 53 CYS CYS A . n A 1 63 THR 63 54 54 THR THR A . n A 1 64 ARG 64 55 55 ARG ARG A . n A 1 65 VAL 65 56 56 VAL VAL A . n A 1 66 LEU 66 57 57 LEU LEU A . n A 1 67 LEU 67 58 58 LEU LEU A . n A 1 68 ILE 68 59 59 ILE ILE A . n A 1 69 SER 69 60 60 SER SER A . n A 1 70 SER 70 61 61 SER SER A . n A 1 71 VAL 71 62 62 VAL VAL A . n A 1 72 MET 72 63 63 MET MET A . n A 1 73 LEU 73 64 64 LEU LEU A . n A 1 74 VAL 74 65 65 VAL VAL A . n A 1 75 MET 75 66 66 MET MET A . n A 1 76 ILE 76 67 67 ILE ILE A . n A 1 77 VAL 77 68 68 VAL VAL A . n A 1 78 GLU 78 69 69 GLU GLU A . n A 1 79 LEU 79 70 70 LEU LEU A . n A 1 80 LEU 80 71 71 LEU LEU A . n A 1 81 ASN 81 72 72 ASN ASN A . n A 1 82 SER 82 73 73 SER SER A . n A 1 83 ALA 83 74 74 ALA ALA A . n A 1 84 ILE 84 75 75 ILE ILE A . n A 1 85 GLU 85 76 76 GLU GLU A . n A 1 86 ALA 86 77 77 ALA ALA A . n A 1 87 VAL 87 78 78 VAL VAL A . n A 1 88 VAL 88 79 79 VAL VAL A . n A 1 89 ASP 89 80 80 ASP ASP A . n A 1 90 ARG 90 81 81 ARG ARG A . n A 1 91 ILE 91 82 82 ILE ILE A . n A 1 92 GLY 92 83 83 GLY GLY A . n A 1 93 SER 93 84 84 SER SER A . n A 1 94 GLU 94 85 85 GLU GLU A . n A 1 95 TYR 95 86 86 TYR TYR A . n A 1 96 HIS 96 87 87 HIS HIS A . n A 1 97 GLU 97 88 88 GLU GLU A . n A 1 98 LEU 98 89 89 LEU LEU A . n A 1 99 SER 99 90 90 SER SER A . n A 1 100 GLY 100 91 91 GLY GLY A . n A 1 101 ARG 101 92 92 ARG ARG A . n A 1 102 ALA 102 93 93 ALA ALA A . n A 1 103 LYS 103 94 94 LYS LYS A . n A 1 104 ASP 104 95 95 ASP ASP A . n A 1 105 LEU 105 96 96 LEU LEU A . n A 1 106 GLY 106 97 97 GLY GLY A . n A 1 107 SER 107 98 98 SER SER A . n A 1 108 ALA 108 99 99 ALA ALA A . n A 1 109 ALA 109 100 100 ALA ALA A . n A 1 110 VAL 110 101 101 VAL VAL A . n A 1 111 LEU 111 102 102 LEU LEU A . n A 1 112 ILE 112 103 103 ILE ILE A . n A 1 113 ALA 113 104 104 ALA ALA A . n A 1 114 ILE 114 105 105 ILE ILE A . n A 1 115 ILE 115 106 106 ILE ILE A . n A 1 116 ASP 116 107 107 ASP ASP A . n A 1 117 ALA 117 108 108 ALA ALA A . n A 1 118 VAL 118 109 109 VAL VAL A . n A 1 119 ILE 119 110 110 ILE ILE A . n A 1 120 THR 120 111 111 THR THR A . n A 1 121 TRP 121 112 112 TRP TRP A . n A 1 122 CYS 122 113 113 CYS CYS A . n A 1 123 ILE 123 114 114 ILE ILE A . n A 1 124 LEU 124 115 115 LEU LEU A . n A 1 125 LEU 125 116 116 LEU LEU A . n A 1 126 TRP 126 117 117 TRP TRP A . n A 1 127 SER 127 118 118 SER SER A . n A 1 128 HIS 128 119 119 HIS HIS A . n A 1 129 PHE 129 120 120 PHE PHE A . n A 1 130 GLY 130 121 121 GLY GLY A . n B 1 1 GLY 1 -8 ? ? ? B . n B 1 2 HIS 2 -7 ? ? ? B . n B 1 3 HIS 3 -6 ? ? ? B . n B 1 4 HIS 4 -5 ? ? ? B . n B 1 5 HIS 5 -4 ? ? ? B . n B 1 6 HIS 6 -3 ? ? ? B . n B 1 7 HIS 7 -2 ? ? ? B . n B 1 8 GLU 8 -1 ? ? ? B . n B 1 9 LEU 9 0 ? ? ? B . n B 1 10 ALA 10 1 ? ? ? B . n B 1 11 ASN 11 2 ? ? ? B . n B 1 12 ASN 12 3 ? ? ? B . n B 1 13 THR 13 4 ? ? ? B . n B 1 14 THR 14 5 ? ? ? B . n B 1 15 GLY 15 6 6 GLY GLY B . n B 1 16 PHE 16 7 7 PHE PHE B . n B 1 17 THR 17 8 8 THR THR B . n B 1 18 ARG 18 9 9 ARG ARG B . n B 1 19 ILE 19 10 10 ILE ILE B . n B 1 20 ILE 20 11 11 ILE ILE B . n B 1 21 LYS 21 12 12 LYS LYS B . n B 1 22 ALA 22 13 13 ALA ALA B . n B 1 23 ALA 23 14 14 ALA ALA B . n B 1 24 GLY 24 15 15 GLY GLY B . n B 1 25 TYR 25 16 16 TYR TYR B . n B 1 26 SER 26 17 17 SER SER B . n B 1 27 TRP 27 18 18 TRP TRP B . n B 1 28 LYS 28 19 19 LYS LYS B . n B 1 29 GLY 29 20 20 GLY GLY B . n B 1 30 LEU 30 21 21 LEU LEU B . n B 1 31 ARG 31 22 22 ARG ARG B . n B 1 32 ALA 32 23 23 ALA ALA B . n B 1 33 ALA 33 24 24 ALA ALA B . n B 1 34 TRP 34 25 25 TRP TRP B . n B 1 35 ILE 35 26 26 ILE ILE B . n B 1 36 ASN 36 27 27 ASN ASN B . n B 1 37 GLU 37 28 28 GLU GLU B . n B 1 38 ALA 38 29 29 ALA ALA B . n B 1 39 ALA 39 30 30 ALA ALA B . n B 1 40 PHE 40 31 31 PHE PHE B . n B 1 41 ARG 41 32 32 ARG ARG B . n B 1 42 GLN 42 33 33 GLN GLN B . n B 1 43 GLU 43 34 34 GLU GLU B . n B 1 44 GLY 44 35 35 GLY GLY B . n B 1 45 VAL 45 36 36 VAL VAL B . n B 1 46 ALA 46 37 37 ALA ALA B . n B 1 47 VAL 47 38 38 VAL VAL B . n B 1 48 LEU 48 39 39 LEU LEU B . n B 1 49 LEU 49 40 40 LEU LEU B . n B 1 50 ALA 50 41 41 ALA ALA B . n B 1 51 VAL 51 42 42 VAL VAL B . n B 1 52 VAL 52 43 43 VAL VAL B . n B 1 53 ILE 53 44 44 ILE ILE B . n B 1 54 ALA 54 45 45 ALA ALA B . n B 1 55 CYS 55 46 46 CYS CYS B . n B 1 56 TRP 56 47 47 TRP TRP B . n B 1 57 LEU 57 48 48 LEU LEU B . n B 1 58 ASP 58 49 49 ASP ASP B . n B 1 59 VAL 59 50 50 VAL VAL B . n B 1 60 ASP 60 51 51 ASP ASP B . n B 1 61 ALA 61 52 52 ALA ALA B . n B 1 62 CYS 62 53 53 CYS CYS B . n B 1 63 THR 63 54 54 THR THR B . n B 1 64 ARG 64 55 55 ARG ARG B . n B 1 65 VAL 65 56 56 VAL VAL B . n B 1 66 LEU 66 57 57 LEU LEU B . n B 1 67 LEU 67 58 58 LEU LEU B . n B 1 68 ILE 68 59 59 ILE ILE B . n B 1 69 SER 69 60 60 SER SER B . n B 1 70 SER 70 61 61 SER SER B . n B 1 71 VAL 71 62 62 VAL VAL B . n B 1 72 MET 72 63 63 MET MET B . n B 1 73 LEU 73 64 64 LEU LEU B . n B 1 74 VAL 74 65 65 VAL VAL B . n B 1 75 MET 75 66 66 MET MET B . n B 1 76 ILE 76 67 67 ILE ILE B . n B 1 77 VAL 77 68 68 VAL VAL B . n B 1 78 GLU 78 69 69 GLU GLU B . n B 1 79 LEU 79 70 70 LEU LEU B . n B 1 80 LEU 80 71 71 LEU LEU B . n B 1 81 ASN 81 72 72 ASN ASN B . n B 1 82 SER 82 73 73 SER SER B . n B 1 83 ALA 83 74 74 ALA ALA B . n B 1 84 ILE 84 75 75 ILE ILE B . n B 1 85 GLU 85 76 76 GLU GLU B . n B 1 86 ALA 86 77 77 ALA ALA B . n B 1 87 VAL 87 78 78 VAL VAL B . n B 1 88 VAL 88 79 79 VAL VAL B . n B 1 89 ASP 89 80 80 ASP ASP B . n B 1 90 ARG 90 81 81 ARG ARG B . n B 1 91 ILE 91 82 82 ILE ILE B . n B 1 92 GLY 92 83 83 GLY GLY B . n B 1 93 SER 93 84 84 SER SER B . n B 1 94 GLU 94 85 85 GLU GLU B . n B 1 95 TYR 95 86 86 TYR TYR B . n B 1 96 HIS 96 87 87 HIS HIS B . n B 1 97 GLU 97 88 88 GLU GLU B . n B 1 98 LEU 98 89 89 LEU LEU B . n B 1 99 SER 99 90 90 SER SER B . n B 1 100 GLY 100 91 91 GLY GLY B . n B 1 101 ARG 101 92 92 ARG ARG B . n B 1 102 ALA 102 93 93 ALA ALA B . n B 1 103 LYS 103 94 94 LYS LYS B . n B 1 104 ASP 104 95 95 ASP ASP B . n B 1 105 LEU 105 96 96 LEU LEU B . n B 1 106 GLY 106 97 97 GLY GLY B . n B 1 107 SER 107 98 98 SER SER B . n B 1 108 ALA 108 99 99 ALA ALA B . n B 1 109 ALA 109 100 100 ALA ALA B . n B 1 110 VAL 110 101 101 VAL VAL B . n B 1 111 LEU 111 102 102 LEU LEU B . n B 1 112 ILE 112 103 103 ILE ILE B . n B 1 113 ALA 113 104 104 ALA ALA B . n B 1 114 ILE 114 105 105 ILE ILE B . n B 1 115 ILE 115 106 106 ILE ILE B . n B 1 116 ASP 116 107 107 ASP ASP B . n B 1 117 ALA 117 108 108 ALA ALA B . n B 1 118 VAL 118 109 109 VAL VAL B . n B 1 119 ILE 119 110 110 ILE ILE B . n B 1 120 THR 120 111 111 THR THR B . n B 1 121 TRP 121 112 112 TRP TRP B . n B 1 122 CYS 122 113 113 CYS CYS B . n B 1 123 ILE 123 114 114 ILE ILE B . n B 1 124 LEU 124 115 115 LEU LEU B . n B 1 125 LEU 125 116 116 LEU LEU B . n B 1 126 TRP 126 117 117 TRP TRP B . n B 1 127 SER 127 118 118 SER SER B . n B 1 128 HIS 128 119 119 HIS HIS B . n B 1 129 PHE 129 120 120 PHE PHE B . n B 1 130 GLY 130 121 121 GLY GLY B . n C 1 1 GLY 1 -8 ? ? ? C . n C 1 2 HIS 2 -7 ? ? ? C . n C 1 3 HIS 3 -6 ? ? ? C . n C 1 4 HIS 4 -5 ? ? ? C . n C 1 5 HIS 5 -4 ? ? ? C . n C 1 6 HIS 6 -3 ? ? ? C . n C 1 7 HIS 7 -2 ? ? ? C . n C 1 8 GLU 8 -1 ? ? ? C . n C 1 9 LEU 9 0 ? ? ? C . n C 1 10 ALA 10 1 ? ? ? C . n C 1 11 ASN 11 2 ? ? ? C . n C 1 12 ASN 12 3 ? ? ? C . n C 1 13 THR 13 4 ? ? ? C . n C 1 14 THR 14 5 ? ? ? C . n C 1 15 GLY 15 6 ? ? ? C . n C 1 16 PHE 16 7 ? ? ? C . n C 1 17 THR 17 8 ? ? ? C . n C 1 18 ARG 18 9 ? ? ? C . n C 1 19 ILE 19 10 ? ? ? C . n C 1 20 ILE 20 11 ? ? ? C . n C 1 21 LYS 21 12 ? ? ? C . n C 1 22 ALA 22 13 ? ? ? C . n C 1 23 ALA 23 14 ? ? ? C . n C 1 24 GLY 24 15 ? ? ? C . n C 1 25 TYR 25 16 16 TYR TYR C . n C 1 26 SER 26 17 17 SER SER C . n C 1 27 TRP 27 18 18 TRP TRP C . n C 1 28 LYS 28 19 19 LYS LYS C . n C 1 29 GLY 29 20 20 GLY GLY C . n C 1 30 LEU 30 21 21 LEU LEU C . n C 1 31 ARG 31 22 22 ARG ARG C . n C 1 32 ALA 32 23 23 ALA ALA C . n C 1 33 ALA 33 24 24 ALA ALA C . n C 1 34 TRP 34 25 25 TRP TRP C . n C 1 35 ILE 35 26 26 ILE ILE C . n C 1 36 ASN 36 27 27 ASN ASN C . n C 1 37 GLU 37 28 28 GLU GLU C . n C 1 38 ALA 38 29 29 ALA ALA C . n C 1 39 ALA 39 30 30 ALA ALA C . n C 1 40 PHE 40 31 31 PHE PHE C . n C 1 41 ARG 41 32 32 ARG ARG C . n C 1 42 GLN 42 33 33 GLN GLN C . n C 1 43 GLU 43 34 34 GLU GLU C . n C 1 44 GLY 44 35 35 GLY GLY C . n C 1 45 VAL 45 36 36 VAL VAL C . n C 1 46 ALA 46 37 37 ALA ALA C . n C 1 47 VAL 47 38 38 VAL VAL C . n C 1 48 LEU 48 39 39 LEU LEU C . n C 1 49 LEU 49 40 40 LEU LEU C . n C 1 50 ALA 50 41 41 ALA ALA C . n C 1 51 VAL 51 42 42 VAL VAL C . n C 1 52 VAL 52 43 43 VAL VAL C . n C 1 53 ILE 53 44 44 ILE ILE C . n C 1 54 ALA 54 45 45 ALA ALA C . n C 1 55 CYS 55 46 46 CYS CYS C . n C 1 56 TRP 56 47 47 TRP TRP C . n C 1 57 LEU 57 48 48 LEU LEU C . n C 1 58 ASP 58 49 49 ASP ASP C . n C 1 59 VAL 59 50 50 VAL VAL C . n C 1 60 ASP 60 51 51 ASP ASP C . n C 1 61 ALA 61 52 52 ALA ALA C . n C 1 62 CYS 62 53 53 CYS CYS C . n C 1 63 THR 63 54 54 THR THR C . n C 1 64 ARG 64 55 55 ARG ARG C . n C 1 65 VAL 65 56 56 VAL VAL C . n C 1 66 LEU 66 57 57 LEU LEU C . n C 1 67 LEU 67 58 58 LEU LEU C . n C 1 68 ILE 68 59 59 ILE ILE C . n C 1 69 SER 69 60 60 SER SER C . n C 1 70 SER 70 61 61 SER SER C . n C 1 71 VAL 71 62 62 VAL VAL C . n C 1 72 MET 72 63 63 MET MET C . n C 1 73 LEU 73 64 64 LEU LEU C . n C 1 74 VAL 74 65 65 VAL VAL C . n C 1 75 MET 75 66 66 MET MET C . n C 1 76 ILE 76 67 67 ILE ILE C . n C 1 77 VAL 77 68 68 VAL VAL C . n C 1 78 GLU 78 69 69 GLU GLU C . n C 1 79 LEU 79 70 70 LEU LEU C . n C 1 80 LEU 80 71 71 LEU LEU C . n C 1 81 ASN 81 72 72 ASN ASN C . n C 1 82 SER 82 73 73 SER SER C . n C 1 83 ALA 83 74 74 ALA ALA C . n C 1 84 ILE 84 75 75 ILE ILE C . n C 1 85 GLU 85 76 76 GLU GLU C . n C 1 86 ALA 86 77 77 ALA ALA C . n C 1 87 VAL 87 78 78 VAL VAL C . n C 1 88 VAL 88 79 79 VAL VAL C . n C 1 89 ASP 89 80 80 ASP ASP C . n C 1 90 ARG 90 81 81 ARG ARG C . n C 1 91 ILE 91 82 82 ILE ILE C . n C 1 92 GLY 92 83 83 GLY GLY C . n C 1 93 SER 93 84 84 SER SER C . n C 1 94 GLU 94 85 85 GLU GLU C . n C 1 95 TYR 95 86 86 TYR TYR C . n C 1 96 HIS 96 87 87 HIS HIS C . n C 1 97 GLU 97 88 88 GLU GLU C . n C 1 98 LEU 98 89 89 LEU LEU C . n C 1 99 SER 99 90 90 SER SER C . n C 1 100 GLY 100 91 91 GLY GLY C . n C 1 101 ARG 101 92 92 ARG ARG C . n C 1 102 ALA 102 93 93 ALA ALA C . n C 1 103 LYS 103 94 94 LYS LYS C . n C 1 104 ASP 104 95 95 ASP ASP C . n C 1 105 LEU 105 96 96 LEU LEU C . n C 1 106 GLY 106 97 97 GLY GLY C . n C 1 107 SER 107 98 98 SER SER C . n C 1 108 ALA 108 99 99 ALA ALA C . n C 1 109 ALA 109 100 100 ALA ALA C . n C 1 110 VAL 110 101 101 VAL VAL C . n C 1 111 LEU 111 102 102 LEU LEU C . n C 1 112 ILE 112 103 103 ILE ILE C . n C 1 113 ALA 113 104 104 ALA ALA C . n C 1 114 ILE 114 105 105 ILE ILE C . n C 1 115 ILE 115 106 106 ILE ILE C . n C 1 116 ASP 116 107 107 ASP ASP C . n C 1 117 ALA 117 108 108 ALA ALA C . n C 1 118 VAL 118 109 109 VAL VAL C . n C 1 119 ILE 119 110 110 ILE ILE C . n C 1 120 THR 120 111 111 THR THR C . n C 1 121 TRP 121 112 112 TRP TRP C . n C 1 122 CYS 122 113 113 CYS CYS C . n C 1 123 ILE 123 114 114 ILE ILE C . n C 1 124 LEU 124 115 115 LEU LEU C . n C 1 125 LEU 125 116 116 LEU LEU C . n C 1 126 TRP 126 117 117 TRP TRP C . n C 1 127 SER 127 118 118 SER SER C . n C 1 128 HIS 128 119 119 HIS HIS C . n C 1 129 PHE 129 120 ? ? ? C . n C 1 130 GLY 130 121 ? ? ? C . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 3ZE5 _cell.length_a 72.740 _cell.length_b 72.740 _cell.length_c 198.990 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZE5 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # _exptl.entry_id 3ZE5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.56 _exptl_crystal.density_percent_sol 65.49 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;3-5 %(V/V) 2-METHYL-2, 4-PENTANEDIOL, 0.1 M SODIUM CHLORIDE, 0.1 M LITHIUM NITRATE, 0.1 M SODIUM CITRATE/HCL PH 5.6. CRYSTALLIZED USING THE IN MESO (LIPIDIC CUBIC PHASE) METHOD AT 4 DEGREE CELSIUS WITH THE 7.8 MONOACYLGLYCEROL (7.8 MAG) AS THE HOSTING LIPID. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2010-12-11 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9778 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength 0.9778 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZE5 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 60.05 _reflns.d_resolution_high 3.10 _reflns.number_obs 11008 _reflns.number_all ? _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.90 _reflns.B_iso_Wilson_estimate 107.84 _reflns.pdbx_redundancy 2.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.18 _reflns_shell.percent_possible_all 90.9 _reflns_shell.Rmerge_I_obs 0.60 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 2.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZE5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10990 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.678 _refine.ls_d_res_high 3.101 _refine.ls_percent_reflns_obs 94.00 _refine.ls_R_factor_obs 0.2335 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2320 _refine.ls_R_factor_R_free 0.2581 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 526 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 111.88 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'THE 3-FOLD SYMMETRY BETWEEN CHAINS A, B AND C WAS NOT HELPFUL FOR REFINEMENT AND THEREFORE NOT USED.' _refine.pdbx_starting_model 'PDB ENTRY 3ZE3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.45 _refine.pdbx_overall_phase_error 32.81 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2569 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2569 _refine_hist.d_res_high 3.101 _refine_hist.d_res_low 45.678 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 2615 'X-RAY DIFFRACTION' ? f_angle_d 0.540 ? ? 3565 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.199 ? ? 886 'X-RAY DIFFRACTION' ? f_chiral_restr 0.036 ? ? 441 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 427 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 3.1006 3.4125 2474 0.2996 91.00 0.3836 . . 134 . . 'X-RAY DIFFRACTION' . 3.4125 3.9061 2571 0.2408 94.00 0.2878 . . 111 . . 'X-RAY DIFFRACTION' . 3.9061 4.9203 2669 0.1961 96.00 0.2310 . . 132 . . 'X-RAY DIFFRACTION' . 4.9203 45.6825 2750 0.2415 95.00 0.2491 . . 149 . . # _database_PDB_matrix.entry_id 3ZE5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3ZE5 _struct.title 'Crystal structure of the integral membrane diacylglycerol kinase - delta4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZE5 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;TRANSFERASE, CLLD, LIPID METABOLISM, IN MESO CRYSTALLISATION, LIPID CUBIC PHASE, LIPIDIC MESOPHASE, THERMOSTABLE MUTANT, MONOACYLGLYCEROL, 7.8 MAG ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KDGL_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P0ABN1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ZE5 A 10 ? 130 ? P0ABN1 2 ? 122 ? 1 121 2 1 3ZE5 B 10 ? 130 ? P0ABN1 2 ? 122 ? 1 121 3 1 3ZE5 C 10 ? 130 ? P0ABN1 2 ? 122 ? 1 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZE5 GLY A 1 ? UNP P0ABN1 ? ? 'expression tag' -8 1 1 3ZE5 HIS A 2 ? UNP P0ABN1 ? ? 'expression tag' -7 2 1 3ZE5 HIS A 3 ? UNP P0ABN1 ? ? 'expression tag' -6 3 1 3ZE5 HIS A 4 ? UNP P0ABN1 ? ? 'expression tag' -5 4 1 3ZE5 HIS A 5 ? UNP P0ABN1 ? ? 'expression tag' -4 5 1 3ZE5 HIS A 6 ? UNP P0ABN1 ? ? 'expression tag' -3 6 1 3ZE5 HIS A 7 ? UNP P0ABN1 ? ? 'expression tag' -2 7 1 3ZE5 GLU A 8 ? UNP P0ABN1 ? ? 'expression tag' -1 8 1 3ZE5 LEU A 9 ? UNP P0ABN1 ? ? 'expression tag' 0 9 1 3ZE5 CYS A 62 ? UNP P0ABN1 ILE 54 'engineered mutation' 53 10 1 3ZE5 LEU A 79 ? UNP P0ABN1 ILE 71 'engineered mutation' 70 11 1 3ZE5 LEU A 105 ? UNP P0ABN1 MET 97 'engineered mutation' 96 12 1 3ZE5 ASP A 116 ? UNP P0ABN1 VAL 108 'engineered mutation' 107 13 2 3ZE5 GLY B 1 ? UNP P0ABN1 ? ? 'expression tag' -8 14 2 3ZE5 HIS B 2 ? UNP P0ABN1 ? ? 'expression tag' -7 15 2 3ZE5 HIS B 3 ? UNP P0ABN1 ? ? 'expression tag' -6 16 2 3ZE5 HIS B 4 ? UNP P0ABN1 ? ? 'expression tag' -5 17 2 3ZE5 HIS B 5 ? UNP P0ABN1 ? ? 'expression tag' -4 18 2 3ZE5 HIS B 6 ? UNP P0ABN1 ? ? 'expression tag' -3 19 2 3ZE5 HIS B 7 ? UNP P0ABN1 ? ? 'expression tag' -2 20 2 3ZE5 GLU B 8 ? UNP P0ABN1 ? ? 'expression tag' -1 21 2 3ZE5 LEU B 9 ? UNP P0ABN1 ? ? 'expression tag' 0 22 2 3ZE5 CYS B 62 ? UNP P0ABN1 ILE 54 'engineered mutation' 53 23 2 3ZE5 LEU B 79 ? UNP P0ABN1 ILE 71 'engineered mutation' 70 24 2 3ZE5 LEU B 105 ? UNP P0ABN1 MET 97 'engineered mutation' 96 25 2 3ZE5 ASP B 116 ? UNP P0ABN1 VAL 108 'engineered mutation' 107 26 3 3ZE5 GLY C 1 ? UNP P0ABN1 ? ? 'expression tag' -8 27 3 3ZE5 HIS C 2 ? UNP P0ABN1 ? ? 'expression tag' -7 28 3 3ZE5 HIS C 3 ? UNP P0ABN1 ? ? 'expression tag' -6 29 3 3ZE5 HIS C 4 ? UNP P0ABN1 ? ? 'expression tag' -5 30 3 3ZE5 HIS C 5 ? UNP P0ABN1 ? ? 'expression tag' -4 31 3 3ZE5 HIS C 6 ? UNP P0ABN1 ? ? 'expression tag' -3 32 3 3ZE5 HIS C 7 ? UNP P0ABN1 ? ? 'expression tag' -2 33 3 3ZE5 GLU C 8 ? UNP P0ABN1 ? ? 'expression tag' -1 34 3 3ZE5 LEU C 9 ? UNP P0ABN1 ? ? 'expression tag' 0 35 3 3ZE5 CYS C 62 ? UNP P0ABN1 ILE 54 'engineered mutation' 53 36 3 3ZE5 LEU C 79 ? UNP P0ABN1 ILE 71 'engineered mutation' 70 37 3 3ZE5 LEU C 105 ? UNP P0ABN1 MET 97 'engineered mutation' 96 38 3 3ZE5 ASP C 116 ? UNP P0ABN1 VAL 108 'engineered mutation' 107 39 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8070 ? 1 MORE -93.7 ? 1 'SSA (A^2)' 16250 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 16 ? GLU A 37 ? PHE A 7 GLU A 28 1 ? 22 HELX_P HELX_P2 2 GLU A 37 ? LEU A 57 ? GLU A 28 LEU A 48 1 ? 21 HELX_P HELX_P3 3 ASP A 60 ? HIS A 96 ? ASP A 51 HIS A 87 1 ? 37 HELX_P HELX_P4 4 GLY A 100 ? PHE A 129 ? GLY A 91 PHE A 120 1 ? 30 HELX_P HELX_P5 5 PHE B 16 ? GLU B 37 ? PHE B 7 GLU B 28 1 ? 22 HELX_P HELX_P6 6 GLU B 37 ? CYS B 55 ? GLU B 28 CYS B 46 1 ? 19 HELX_P HELX_P7 7 ASP B 60 ? TYR B 95 ? ASP B 51 TYR B 86 1 ? 36 HELX_P HELX_P8 8 GLY B 100 ? PHE B 129 ? GLY B 91 PHE B 120 1 ? 30 HELX_P HELX_P9 9 TYR C 25 ? GLU C 37 ? TYR C 16 GLU C 28 1 ? 13 HELX_P HELX_P10 10 GLU C 37 ? LEU C 57 ? GLU C 28 LEU C 48 1 ? 21 HELX_P HELX_P11 11 ASP C 60 ? GLY C 92 ? ASP C 51 GLY C 83 1 ? 33 HELX_P HELX_P12 12 HIS C 96 ? HIS C 128 ? HIS C 87 HIS C 119 1 ? 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -61.0479 17.1927 17.7453 0.9823 0.7065 0.5143 0.2043 0.1509 -0.0303 6.7375 6.4283 7.5054 -0.1997 1.7108 -0.8498 0.6002 0.8341 0.0184 -0.7234 -0.2648 1.0751 0.5833 -1.2393 -0.0274 'X-RAY DIFFRACTION' 2 ? refined -52.7384 16.3086 37.6905 1.0868 0.5585 0.2587 0.5450 0.0688 0.2482 6.2875 1.8088 1.7929 2.2101 -0.4583 -0.5221 -0.2139 -1.1370 -0.9156 0.4380 -0.1173 -0.1626 -0.0751 -0.1518 0.1594 'X-RAY DIFFRACTION' 3 ? refined -49.4676 16.6468 9.5906 1.2757 0.6933 0.4650 0.3777 0.1508 -0.0428 6.7359 3.9521 0.7138 2.6712 -2.0528 -0.3264 -0.7802 1.0356 -1.1753 -1.6105 -0.0054 0.3321 0.9406 0.1463 -0.0729 'X-RAY DIFFRACTION' 4 ? refined -41.5801 14.3152 24.4715 0.9734 0.8858 0.7439 0.6828 0.1401 0.1709 2.9587 2.4012 3.3572 -0.9500 -0.6423 -0.5324 -0.3001 0.1673 -0.2405 -0.1250 0.0903 -0.0083 0.4414 0.7159 -0.6819 'X-RAY DIFFRACTION' 5 ? refined -40.6423 39.1569 13.6237 1.0728 1.5595 0.6106 0.0478 0.2603 0.3081 5.6942 4.4692 2.5238 -0.0425 1.0075 1.8269 0.0507 -0.2683 -0.1330 -0.9983 0.4350 -0.1345 -1.5349 1.0848 -0.3650 'X-RAY DIFFRACTION' 6 ? refined -52.9680 38.1207 31.7167 1.4169 0.4889 0.7076 0.8730 0.0256 0.0226 2.0920 2.4586 2.1452 -1.4895 1.0035 -1.3521 0.3493 0.5452 0.2185 -0.8073 -0.0680 0.2240 -0.5254 -0.2500 0.1494 'X-RAY DIFFRACTION' 7 ? refined -52.7008 26.4451 15.1968 0.9506 0.7693 0.3771 0.5279 0.0288 0.1922 2.8531 1.0499 3.8548 -0.7375 -1.2349 0.4407 -0.5050 0.7344 -0.5397 0.1819 -0.2774 0.6901 0.0666 -0.2075 -0.6337 'X-RAY DIFFRACTION' 8 ? refined -57.7638 28.5108 39.1829 1.0526 0.6251 -0.0369 0.6367 0.3515 -0.5840 4.3742 5.5745 5.5847 3.3679 0.2661 0.9352 -0.0586 -1.4130 1.2656 1.5845 -0.4533 0.8268 -0.4077 -0.6089 -0.5343 'X-RAY DIFFRACTION' 9 ? refined -31.6306 14.1805 15.5044 1.4883 1.4737 1.1817 -0.0616 -0.1598 0.5751 4.2866 5.5935 7.6672 3.6840 4.4055 6.5525 1.4746 0.5423 0.5055 0.7455 0.4337 -0.1927 0.5241 1.4514 -0.5984 'X-RAY DIFFRACTION' 10 ? refined -31.0151 23.9032 31.2530 1.2014 1.8005 0.9830 0.3472 -0.0475 0.1421 3.7731 4.0799 3.3573 0.7225 -1.8757 2.5888 -0.7839 0.4504 -0.5830 -0.1173 0.6147 -0.2039 -0.3585 1.9551 -0.2155 'X-RAY DIFFRACTION' 11 ? refined -38.7041 24.1405 29.8521 0.9201 1.1838 0.5333 0.3522 -0.0363 0.0732 3.4215 3.6715 1.0056 0.1935 1.0824 -0.0194 0.1098 0.0799 -0.6092 0.0633 0.0167 0.5791 0.3912 2.1987 -0.1309 'X-RAY DIFFRACTION' 12 ? refined -40.6545 30.6671 16.9583 0.6976 0.6130 0.5770 0.1838 0.0543 0.0981 5.6099 4.6034 7.0582 -0.0395 0.4214 1.4979 -0.5678 0.6078 -0.1093 -0.0347 -0.0110 -0.7054 -0.3039 2.5359 -0.3574 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 7:36)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 37:65)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 66:85)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 86:121)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 5:29)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 30:53)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 54:106)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 107:120)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 15:26)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 27:53)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 54:69)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(CHAIN C AND RESID 70:120)' # _pdbx_entry_details.entry_id 3ZE5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT CONTAINS AN N-TERMIANL HIS TAG 'GHHHHHHEL'. COMPARED TO THE WILDTYPE FORM, THE PROTEIN HAS SEVEN MUTATIONS. THEY ARE I53C, I70L, M96L AND V107D. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -8 ? A GLY 1 2 1 Y 1 A HIS -7 ? A HIS 2 3 1 Y 1 A HIS -6 ? A HIS 3 4 1 Y 1 A HIS -5 ? A HIS 4 5 1 Y 1 A HIS -4 ? A HIS 5 6 1 Y 1 A HIS -3 ? A HIS 6 7 1 Y 1 A HIS -2 ? A HIS 7 8 1 Y 1 A GLU -1 ? A GLU 8 9 1 Y 1 A LEU 0 ? A LEU 9 10 1 Y 1 A ALA 1 ? A ALA 10 11 1 Y 1 A ASN 2 ? A ASN 11 12 1 Y 1 A ASN 3 ? A ASN 12 13 1 Y 1 A THR 4 ? A THR 13 14 1 Y 1 A THR 5 ? A THR 14 15 1 Y 1 A GLY 6 ? A GLY 15 16 1 Y 1 B GLY -8 ? B GLY 1 17 1 Y 1 B HIS -7 ? B HIS 2 18 1 Y 1 B HIS -6 ? B HIS 3 19 1 Y 1 B HIS -5 ? B HIS 4 20 1 Y 1 B HIS -4 ? B HIS 5 21 1 Y 1 B HIS -3 ? B HIS 6 22 1 Y 1 B HIS -2 ? B HIS 7 23 1 Y 1 B GLU -1 ? B GLU 8 24 1 Y 1 B LEU 0 ? B LEU 9 25 1 Y 1 B ALA 1 ? B ALA 10 26 1 Y 1 B ASN 2 ? B ASN 11 27 1 Y 1 B ASN 3 ? B ASN 12 28 1 Y 1 B THR 4 ? B THR 13 29 1 Y 1 B THR 5 ? B THR 14 30 1 Y 1 C GLY -8 ? C GLY 1 31 1 Y 1 C HIS -7 ? C HIS 2 32 1 Y 1 C HIS -6 ? C HIS 3 33 1 Y 1 C HIS -5 ? C HIS 4 34 1 Y 1 C HIS -4 ? C HIS 5 35 1 Y 1 C HIS -3 ? C HIS 6 36 1 Y 1 C HIS -2 ? C HIS 7 37 1 Y 1 C GLU -1 ? C GLU 8 38 1 Y 1 C LEU 0 ? C LEU 9 39 1 Y 1 C ALA 1 ? C ALA 10 40 1 Y 1 C ASN 2 ? C ASN 11 41 1 Y 1 C ASN 3 ? C ASN 12 42 1 Y 1 C THR 4 ? C THR 13 43 1 Y 1 C THR 5 ? C THR 14 44 1 Y 1 C GLY 6 ? C GLY 15 45 1 Y 1 C PHE 7 ? C PHE 16 46 1 Y 1 C THR 8 ? C THR 17 47 1 Y 1 C ARG 9 ? C ARG 18 48 1 Y 1 C ILE 10 ? C ILE 19 49 1 Y 1 C ILE 11 ? C ILE 20 50 1 Y 1 C LYS 12 ? C LYS 21 51 1 Y 1 C ALA 13 ? C ALA 22 52 1 Y 1 C ALA 14 ? C ALA 23 53 1 Y 1 C GLY 15 ? C GLY 24 54 1 Y 1 C PHE 120 ? C PHE 129 55 1 Y 1 C GLY 121 ? C GLY 130 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 SER N N N N 270 SER CA C N S 271 SER C C N N 272 SER O O N N 273 SER CB C N N 274 SER OG O N N 275 SER OXT O N N 276 SER H H N N 277 SER H2 H N N 278 SER HA H N N 279 SER HB2 H N N 280 SER HB3 H N N 281 SER HG H N N 282 SER HXT H N N 283 THR N N N N 284 THR CA C N S 285 THR C C N N 286 THR O O N N 287 THR CB C N R 288 THR OG1 O N N 289 THR CG2 C N N 290 THR OXT O N N 291 THR H H N N 292 THR H2 H N N 293 THR HA H N N 294 THR HB H N N 295 THR HG1 H N N 296 THR HG21 H N N 297 THR HG22 H N N 298 THR HG23 H N N 299 THR HXT H N N 300 TRP N N N N 301 TRP CA C N S 302 TRP C C N N 303 TRP O O N N 304 TRP CB C N N 305 TRP CG C Y N 306 TRP CD1 C Y N 307 TRP CD2 C Y N 308 TRP NE1 N Y N 309 TRP CE2 C Y N 310 TRP CE3 C Y N 311 TRP CZ2 C Y N 312 TRP CZ3 C Y N 313 TRP CH2 C Y N 314 TRP OXT O N N 315 TRP H H N N 316 TRP H2 H N N 317 TRP HA H N N 318 TRP HB2 H N N 319 TRP HB3 H N N 320 TRP HD1 H N N 321 TRP HE1 H N N 322 TRP HE3 H N N 323 TRP HZ2 H N N 324 TRP HZ3 H N N 325 TRP HH2 H N N 326 TRP HXT H N N 327 TYR N N N N 328 TYR CA C N S 329 TYR C C N N 330 TYR O O N N 331 TYR CB C N N 332 TYR CG C Y N 333 TYR CD1 C Y N 334 TYR CD2 C Y N 335 TYR CE1 C Y N 336 TYR CE2 C Y N 337 TYR CZ C Y N 338 TYR OH O N N 339 TYR OXT O N N 340 TYR H H N N 341 TYR H2 H N N 342 TYR HA H N N 343 TYR HB2 H N N 344 TYR HB3 H N N 345 TYR HD1 H N N 346 TYR HD2 H N N 347 TYR HE1 H N N 348 TYR HE2 H N N 349 TYR HH H N N 350 TYR HXT H N N 351 VAL N N N N 352 VAL CA C N S 353 VAL C C N N 354 VAL O O N N 355 VAL CB C N N 356 VAL CG1 C N N 357 VAL CG2 C N N 358 VAL OXT O N N 359 VAL H H N N 360 VAL H2 H N N 361 VAL HA H N N 362 VAL HB H N N 363 VAL HG11 H N N 364 VAL HG12 H N N 365 VAL HG13 H N N 366 VAL HG21 H N N 367 VAL HG22 H N N 368 VAL HG23 H N N 369 VAL HXT H N N 370 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 SER N CA sing N N 258 SER N H sing N N 259 SER N H2 sing N N 260 SER CA C sing N N 261 SER CA CB sing N N 262 SER CA HA sing N N 263 SER C O doub N N 264 SER C OXT sing N N 265 SER CB OG sing N N 266 SER CB HB2 sing N N 267 SER CB HB3 sing N N 268 SER OG HG sing N N 269 SER OXT HXT sing N N 270 THR N CA sing N N 271 THR N H sing N N 272 THR N H2 sing N N 273 THR CA C sing N N 274 THR CA CB sing N N 275 THR CA HA sing N N 276 THR C O doub N N 277 THR C OXT sing N N 278 THR CB OG1 sing N N 279 THR CB CG2 sing N N 280 THR CB HB sing N N 281 THR OG1 HG1 sing N N 282 THR CG2 HG21 sing N N 283 THR CG2 HG22 sing N N 284 THR CG2 HG23 sing N N 285 THR OXT HXT sing N N 286 TRP N CA sing N N 287 TRP N H sing N N 288 TRP N H2 sing N N 289 TRP CA C sing N N 290 TRP CA CB sing N N 291 TRP CA HA sing N N 292 TRP C O doub N N 293 TRP C OXT sing N N 294 TRP CB CG sing N N 295 TRP CB HB2 sing N N 296 TRP CB HB3 sing N N 297 TRP CG CD1 doub Y N 298 TRP CG CD2 sing Y N 299 TRP CD1 NE1 sing Y N 300 TRP CD1 HD1 sing N N 301 TRP CD2 CE2 doub Y N 302 TRP CD2 CE3 sing Y N 303 TRP NE1 CE2 sing Y N 304 TRP NE1 HE1 sing N N 305 TRP CE2 CZ2 sing Y N 306 TRP CE3 CZ3 doub Y N 307 TRP CE3 HE3 sing N N 308 TRP CZ2 CH2 doub Y N 309 TRP CZ2 HZ2 sing N N 310 TRP CZ3 CH2 sing Y N 311 TRP CZ3 HZ3 sing N N 312 TRP CH2 HH2 sing N N 313 TRP OXT HXT sing N N 314 TYR N CA sing N N 315 TYR N H sing N N 316 TYR N H2 sing N N 317 TYR CA C sing N N 318 TYR CA CB sing N N 319 TYR CA HA sing N N 320 TYR C O doub N N 321 TYR C OXT sing N N 322 TYR CB CG sing N N 323 TYR CB HB2 sing N N 324 TYR CB HB3 sing N N 325 TYR CG CD1 doub Y N 326 TYR CG CD2 sing Y N 327 TYR CD1 CE1 sing Y N 328 TYR CD1 HD1 sing N N 329 TYR CD2 CE2 doub Y N 330 TYR CD2 HD2 sing N N 331 TYR CE1 CZ doub Y N 332 TYR CE1 HE1 sing N N 333 TYR CE2 CZ sing Y N 334 TYR CE2 HE2 sing N N 335 TYR CZ OH sing N N 336 TYR OH HH sing N N 337 TYR OXT HXT sing N N 338 VAL N CA sing N N 339 VAL N H sing N N 340 VAL N H2 sing N N 341 VAL CA C sing N N 342 VAL CA CB sing N N 343 VAL CA HA sing N N 344 VAL C O doub N N 345 VAL C OXT sing N N 346 VAL CB CG1 sing N N 347 VAL CB CG2 sing N N 348 VAL CB HB sing N N 349 VAL CG1 HG11 sing N N 350 VAL CG1 HG12 sing N N 351 VAL CG1 HG13 sing N N 352 VAL CG2 HG21 sing N N 353 VAL CG2 HG22 sing N N 354 VAL CG2 HG23 sing N N 355 VAL OXT HXT sing N N 356 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ZE3 _pdbx_initial_refinement_model.details 'PDB ENTRY 3ZE3' # _atom_sites.entry_id 3ZE5 _atom_sites.fract_transf_matrix[1][1] 0.013748 _atom_sites.fract_transf_matrix[1][2] 0.007937 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015874 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005025 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_