HEADER TRANSFERASE 03-DEC-12 3ZE5 TITLE CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL KINASE - TITLE 2 DELTA4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIACYLGLYCEROL KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DAGK, DIGLYCERIDE KINASE, DGK; COMPND 5 EC: 2.7.1.107; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: WH1061; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTRCHISB; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRCHISB-DGKA_DELTA4; SOURCE 10 OTHER_DETAILS: THE GENE WAS SYNTHESIZED BASED ON THE DGKA NUCLEOTIDE SOURCE 11 SEQUENCE OF ESCHERICHIA COLI K12, WITH ADDITIONAL NUCLEOTIDES SOURCE 12 ENCODING HIS TAG SEQUENCES AT THE N- TERMINUS. SITE-DIRECTED SOURCE 13 MUTATIONS WERE MADE USING PCR. KEYWDS TRANSFERASE, CLLD, LIPID METABOLISM, IN MESO CRYSTALLISATION, LIPID KEYWDS 2 CUBIC PHASE, LIPIDIC MESOPHASE, THERMOSTABLE MUTANT, KEYWDS 3 MONOACYLGLYCEROL, 7.8 MAG EXPDTA X-RAY DIFFRACTION AUTHOR D.LI,L.VOGELEY,V.E.PYE,J.A.LYONS,D.ARAGAO,M.CAFFREY REVDAT 7 07-FEB-24 3ZE5 1 REMARK REVDAT 6 29-MAR-23 3ZE5 1 AUTHOR REVDAT 5 03-APR-19 3ZE5 1 REMARK REVDAT 4 06-MAR-19 3ZE5 1 REMARK REVDAT 3 05-JUN-13 3ZE5 1 JRNL REVDAT 2 29-MAY-13 3ZE5 1 JRNL REVDAT 1 22-MAY-13 3ZE5 0 JRNL AUTH D.LI,J.A.LYONS,V.E.PYE,L.VOGELEY,D.ARAGAO,C.P.KENYON, JRNL AUTH 2 S.T.A.SHAH,C.DOHERTY,M.AHERNE,M.CAFFREY JRNL TITL CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL JRNL TITL 2 KINASE. JRNL REF NATURE V. 497 521 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23676677 JRNL DOI 10.1038/NATURE12179 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 10990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6825 - 4.9203 0.95 2750 149 0.2415 0.2491 REMARK 3 2 4.9203 - 3.9061 0.96 2669 132 0.1961 0.2310 REMARK 3 3 3.9061 - 3.4125 0.94 2571 111 0.2408 0.2878 REMARK 3 4 3.4125 - 3.1006 0.91 2474 134 0.2996 0.3836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 107.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2615 REMARK 3 ANGLE : 0.540 3565 REMARK 3 CHIRALITY : 0.036 441 REMARK 3 PLANARITY : 0.002 427 REMARK 3 DIHEDRAL : 12.199 886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 7:36) REMARK 3 ORIGIN FOR THE GROUP (A): -61.0479 17.1927 17.7453 REMARK 3 T TENSOR REMARK 3 T11: 0.9823 T22: 0.7065 REMARK 3 T33: 0.5143 T12: 0.2043 REMARK 3 T13: 0.1509 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 6.7375 L22: 6.4283 REMARK 3 L33: 7.5054 L12: -0.1997 REMARK 3 L13: 1.7108 L23: -0.8498 REMARK 3 S TENSOR REMARK 3 S11: 0.6002 S12: 0.8341 S13: 0.0184 REMARK 3 S21: -0.7234 S22: -0.2648 S23: 1.0751 REMARK 3 S31: 0.5833 S32: -1.2393 S33: -0.0274 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 37:65) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7384 16.3086 37.6905 REMARK 3 T TENSOR REMARK 3 T11: 1.0868 T22: 0.5585 REMARK 3 T33: 0.2587 T12: 0.5450 REMARK 3 T13: 0.0688 T23: 0.2482 REMARK 3 L TENSOR REMARK 3 L11: 6.2875 L22: 1.8088 REMARK 3 L33: 1.7929 L12: 2.2101 REMARK 3 L13: -0.4583 L23: -0.5221 REMARK 3 S TENSOR REMARK 3 S11: -0.2139 S12: -1.1370 S13: -0.9156 REMARK 3 S21: 0.4380 S22: -0.1173 S23: -0.1626 REMARK 3 S31: -0.0751 S32: -0.1518 S33: 0.1594 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 66:85) REMARK 3 ORIGIN FOR THE GROUP (A): -49.4676 16.6468 9.5906 REMARK 3 T TENSOR REMARK 3 T11: 1.2757 T22: 0.6933 REMARK 3 T33: 0.4650 T12: 0.3777 REMARK 3 T13: 0.1508 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 6.7359 L22: 3.9521 REMARK 3 L33: 0.7138 L12: 2.6712 REMARK 3 L13: -2.0528 L23: -0.3264 REMARK 3 S TENSOR REMARK 3 S11: -0.7802 S12: 1.0356 S13: -1.1753 REMARK 3 S21: -1.6105 S22: -0.0054 S23: 0.3321 REMARK 3 S31: 0.9406 S32: 0.1463 S33: -0.0729 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 86:121) REMARK 3 ORIGIN FOR THE GROUP (A): -41.5801 14.3152 24.4715 REMARK 3 T TENSOR REMARK 3 T11: 0.9734 T22: 0.8858 REMARK 3 T33: 0.7439 T12: 0.6828 REMARK 3 T13: 0.1401 T23: 0.1709 REMARK 3 L TENSOR REMARK 3 L11: 2.9587 L22: 2.4012 REMARK 3 L33: 3.3572 L12: -0.9500 REMARK 3 L13: -0.6423 L23: -0.5324 REMARK 3 S TENSOR REMARK 3 S11: -0.3001 S12: 0.1673 S13: -0.2405 REMARK 3 S21: -0.1250 S22: 0.0903 S23: -0.0083 REMARK 3 S31: 0.4414 S32: 0.7159 S33: -0.6819 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 5:29) REMARK 3 ORIGIN FOR THE GROUP (A): -40.6423 39.1569 13.6237 REMARK 3 T TENSOR REMARK 3 T11: 1.0728 T22: 1.5595 REMARK 3 T33: 0.6106 T12: 0.0478 REMARK 3 T13: 0.2603 T23: 0.3081 REMARK 3 L TENSOR REMARK 3 L11: 5.6942 L22: 4.4692 REMARK 3 L33: 2.5238 L12: -0.0425 REMARK 3 L13: 1.0075 L23: 1.8269 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.2683 S13: -0.1330 REMARK 3 S21: -0.9983 S22: 0.4350 S23: -0.1345 REMARK 3 S31: -1.5349 S32: 1.0848 S33: -0.3650 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 30:53) REMARK 3 ORIGIN FOR THE GROUP (A): -52.9680 38.1207 31.7167 REMARK 3 T TENSOR REMARK 3 T11: 1.4169 T22: 0.4889 REMARK 3 T33: 0.7076 T12: 0.8730 REMARK 3 T13: 0.0256 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.0920 L22: 2.4586 REMARK 3 L33: 2.1452 L12: -1.4895 REMARK 3 L13: 1.0035 L23: -1.3521 REMARK 3 S TENSOR REMARK 3 S11: 0.3493 S12: 0.5452 S13: 0.2185 REMARK 3 S21: -0.8073 S22: -0.0680 S23: 0.2240 REMARK 3 S31: -0.5254 S32: -0.2500 S33: 0.1494 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 54:106) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7008 26.4451 15.1968 REMARK 3 T TENSOR REMARK 3 T11: 0.9506 T22: 0.7693 REMARK 3 T33: 0.3771 T12: 0.5279 REMARK 3 T13: 0.0288 T23: 0.1922 REMARK 3 L TENSOR REMARK 3 L11: 2.8531 L22: 1.0499 REMARK 3 L33: 3.8548 L12: -0.7375 REMARK 3 L13: -1.2349 L23: 0.4407 REMARK 3 S TENSOR REMARK 3 S11: -0.5050 S12: 0.7344 S13: -0.5397 REMARK 3 S21: 0.1819 S22: -0.2774 S23: 0.6901 REMARK 3 S31: 0.0666 S32: -0.2075 S33: -0.6337 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 107:120) REMARK 3 ORIGIN FOR THE GROUP (A): -57.7638 28.5108 39.1829 REMARK 3 T TENSOR REMARK 3 T11: 1.0526 T22: 0.6251 REMARK 3 T33: -0.0369 T12: 0.6367 REMARK 3 T13: 0.3515 T23: -0.5840 REMARK 3 L TENSOR REMARK 3 L11: 4.3742 L22: 5.5745 REMARK 3 L33: 5.5847 L12: 3.3679 REMARK 3 L13: 0.2661 L23: 0.9352 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -1.4130 S13: 1.2656 REMARK 3 S21: 1.5845 S22: -0.4533 S23: 0.8268 REMARK 3 S31: -0.4077 S32: -0.6089 S33: -0.5343 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 15:26) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6306 14.1805 15.5044 REMARK 3 T TENSOR REMARK 3 T11: 1.4883 T22: 1.4737 REMARK 3 T33: 1.1817 T12: -0.0616 REMARK 3 T13: -0.1598 T23: 0.5751 REMARK 3 L TENSOR REMARK 3 L11: 4.2866 L22: 5.5935 REMARK 3 L33: 7.6672 L12: 3.6840 REMARK 3 L13: 4.4055 L23: 6.5525 REMARK 3 S TENSOR REMARK 3 S11: 1.4746 S12: 0.5423 S13: 0.5055 REMARK 3 S21: 0.7455 S22: 0.4337 S23: -0.1927 REMARK 3 S31: 0.5241 S32: 1.4514 S33: -0.5984 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 27:53) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0151 23.9032 31.2530 REMARK 3 T TENSOR REMARK 3 T11: 1.2014 T22: 1.8005 REMARK 3 T33: 0.9830 T12: 0.3472 REMARK 3 T13: -0.0475 T23: 0.1421 REMARK 3 L TENSOR REMARK 3 L11: 3.7731 L22: 4.0799 REMARK 3 L33: 3.3573 L12: 0.7225 REMARK 3 L13: -1.8757 L23: 2.5888 REMARK 3 S TENSOR REMARK 3 S11: -0.7839 S12: 0.4504 S13: -0.5830 REMARK 3 S21: -0.1173 S22: 0.6147 S23: -0.2039 REMARK 3 S31: -0.3585 S32: 1.9551 S33: -0.2155 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 54:69) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7041 24.1405 29.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.9201 T22: 1.1838 REMARK 3 T33: 0.5333 T12: 0.3522 REMARK 3 T13: -0.0363 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 3.4215 L22: 3.6715 REMARK 3 L33: 1.0056 L12: 0.1935 REMARK 3 L13: 1.0824 L23: -0.0194 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: 0.0799 S13: -0.6092 REMARK 3 S21: 0.0633 S22: 0.0167 S23: 0.5791 REMARK 3 S31: 0.3912 S32: 2.1987 S33: -0.1309 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 70:120) REMARK 3 ORIGIN FOR THE GROUP (A): -40.6545 30.6671 16.9583 REMARK 3 T TENSOR REMARK 3 T11: 0.6976 T22: 0.6130 REMARK 3 T33: 0.5770 T12: 0.1838 REMARK 3 T13: 0.0543 T23: 0.0981 REMARK 3 L TENSOR REMARK 3 L11: 5.6099 L22: 4.6034 REMARK 3 L33: 7.0582 L12: -0.0395 REMARK 3 L13: 0.4214 L23: 1.4979 REMARK 3 S TENSOR REMARK 3 S11: -0.5678 S12: 0.6078 S13: -0.1093 REMARK 3 S21: -0.0347 S22: -0.0110 S23: -0.7054 REMARK 3 S31: -0.3039 S32: 2.5359 S33: -0.3574 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE 3-FOLD SYMMETRY BETWEEN CHAINS A, B REMARK 3 AND C WAS NOT HELPFUL FOR REFINEMENT AND THEREFORE NOT USED. REMARK 4 REMARK 4 3ZE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290054706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11008 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 60.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZE3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-5 %(V/V) 2-METHYL-2, 4-PENTANEDIOL, REMARK 280 0.1 M SODIUM CHLORIDE, 0.1 M LITHIUM NITRATE, 0.1 M SODIUM REMARK 280 CITRATE/HCL PH 5.6. CRYSTALLIZED USING THE IN MESO (LIPIDIC REMARK 280 CUBIC PHASE) METHOD AT 4 DEGREE CELSIUS WITH THE 7.8 REMARK 280 MONOACYLGLYCEROL (7.8 MAG) AS THE HOSTING LIPID., TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.33000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.66000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.66000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLU B -1 REMARK 465 LEU B 0 REMARK 465 ALA B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLY C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLU C -1 REMARK 465 LEU C 0 REMARK 465 ALA C 1 REMARK 465 ASN C 2 REMARK 465 ASN C 3 REMARK 465 THR C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 PHE C 7 REMARK 465 THR C 8 REMARK 465 ARG C 9 REMARK 465 ILE C 10 REMARK 465 ILE C 11 REMARK 465 LYS C 12 REMARK 465 ALA C 13 REMARK 465 ALA C 14 REMARK 465 GLY C 15 REMARK 465 PHE C 120 REMARK 465 GLY C 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZE3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL KINASE - REMARK 900 DELTA7 REMARK 900 RELATED ID: 3ZE4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INTEGRAL MEMBRANE DIACYLGLYCEROL KINASE - REMARK 900 WILD-TYPE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT CONTAINS AN N-TERMIANL HIS TAG 'GHHHHHHEL'. REMARK 999 COMPARED TO THE WILDTYPE FORM, THE PROTEIN HAS SEVEN REMARK 999 MUTATIONS. THEY ARE I53C, I70L, M96L AND V107D. DBREF 3ZE5 A 1 121 UNP P0ABN1 KDGL_ECOLI 2 122 DBREF 3ZE5 B 1 121 UNP P0ABN1 KDGL_ECOLI 2 122 DBREF 3ZE5 C 1 121 UNP P0ABN1 KDGL_ECOLI 2 122 SEQADV 3ZE5 GLY A -8 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS A -7 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS A -6 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS A -5 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS A -4 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS A -3 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS A -2 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 GLU A -1 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 LEU A 0 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 CYS A 53 UNP P0ABN1 ILE 54 ENGINEERED MUTATION SEQADV 3ZE5 LEU A 70 UNP P0ABN1 ILE 71 ENGINEERED MUTATION SEQADV 3ZE5 LEU A 96 UNP P0ABN1 MET 97 ENGINEERED MUTATION SEQADV 3ZE5 ASP A 107 UNP P0ABN1 VAL 108 ENGINEERED MUTATION SEQADV 3ZE5 GLY B -8 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS B -7 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS B -6 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS B -5 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS B -4 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS B -3 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS B -2 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 GLU B -1 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 LEU B 0 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 CYS B 53 UNP P0ABN1 ILE 54 ENGINEERED MUTATION SEQADV 3ZE5 LEU B 70 UNP P0ABN1 ILE 71 ENGINEERED MUTATION SEQADV 3ZE5 LEU B 96 UNP P0ABN1 MET 97 ENGINEERED MUTATION SEQADV 3ZE5 ASP B 107 UNP P0ABN1 VAL 108 ENGINEERED MUTATION SEQADV 3ZE5 GLY C -8 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS C -7 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS C -6 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS C -5 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS C -4 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS C -3 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 HIS C -2 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 GLU C -1 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 LEU C 0 UNP P0ABN1 EXPRESSION TAG SEQADV 3ZE5 CYS C 53 UNP P0ABN1 ILE 54 ENGINEERED MUTATION SEQADV 3ZE5 LEU C 70 UNP P0ABN1 ILE 71 ENGINEERED MUTATION SEQADV 3ZE5 LEU C 96 UNP P0ABN1 MET 97 ENGINEERED MUTATION SEQADV 3ZE5 ASP C 107 UNP P0ABN1 VAL 108 ENGINEERED MUTATION SEQRES 1 A 130 GLY HIS HIS HIS HIS HIS HIS GLU LEU ALA ASN ASN THR SEQRES 2 A 130 THR GLY PHE THR ARG ILE ILE LYS ALA ALA GLY TYR SER SEQRES 3 A 130 TRP LYS GLY LEU ARG ALA ALA TRP ILE ASN GLU ALA ALA SEQRES 4 A 130 PHE ARG GLN GLU GLY VAL ALA VAL LEU LEU ALA VAL VAL SEQRES 5 A 130 ILE ALA CYS TRP LEU ASP VAL ASP ALA CYS THR ARG VAL SEQRES 6 A 130 LEU LEU ILE SER SER VAL MET LEU VAL MET ILE VAL GLU SEQRES 7 A 130 LEU LEU ASN SER ALA ILE GLU ALA VAL VAL ASP ARG ILE SEQRES 8 A 130 GLY SER GLU TYR HIS GLU LEU SER GLY ARG ALA LYS ASP SEQRES 9 A 130 LEU GLY SER ALA ALA VAL LEU ILE ALA ILE ILE ASP ALA SEQRES 10 A 130 VAL ILE THR TRP CYS ILE LEU LEU TRP SER HIS PHE GLY SEQRES 1 B 130 GLY HIS HIS HIS HIS HIS HIS GLU LEU ALA ASN ASN THR SEQRES 2 B 130 THR GLY PHE THR ARG ILE ILE LYS ALA ALA GLY TYR SER SEQRES 3 B 130 TRP LYS GLY LEU ARG ALA ALA TRP ILE ASN GLU ALA ALA SEQRES 4 B 130 PHE ARG GLN GLU GLY VAL ALA VAL LEU LEU ALA VAL VAL SEQRES 5 B 130 ILE ALA CYS TRP LEU ASP VAL ASP ALA CYS THR ARG VAL SEQRES 6 B 130 LEU LEU ILE SER SER VAL MET LEU VAL MET ILE VAL GLU SEQRES 7 B 130 LEU LEU ASN SER ALA ILE GLU ALA VAL VAL ASP ARG ILE SEQRES 8 B 130 GLY SER GLU TYR HIS GLU LEU SER GLY ARG ALA LYS ASP SEQRES 9 B 130 LEU GLY SER ALA ALA VAL LEU ILE ALA ILE ILE ASP ALA SEQRES 10 B 130 VAL ILE THR TRP CYS ILE LEU LEU TRP SER HIS PHE GLY SEQRES 1 C 130 GLY HIS HIS HIS HIS HIS HIS GLU LEU ALA ASN ASN THR SEQRES 2 C 130 THR GLY PHE THR ARG ILE ILE LYS ALA ALA GLY TYR SER SEQRES 3 C 130 TRP LYS GLY LEU ARG ALA ALA TRP ILE ASN GLU ALA ALA SEQRES 4 C 130 PHE ARG GLN GLU GLY VAL ALA VAL LEU LEU ALA VAL VAL SEQRES 5 C 130 ILE ALA CYS TRP LEU ASP VAL ASP ALA CYS THR ARG VAL SEQRES 6 C 130 LEU LEU ILE SER SER VAL MET LEU VAL MET ILE VAL GLU SEQRES 7 C 130 LEU LEU ASN SER ALA ILE GLU ALA VAL VAL ASP ARG ILE SEQRES 8 C 130 GLY SER GLU TYR HIS GLU LEU SER GLY ARG ALA LYS ASP SEQRES 9 C 130 LEU GLY SER ALA ALA VAL LEU ILE ALA ILE ILE ASP ALA SEQRES 10 C 130 VAL ILE THR TRP CYS ILE LEU LEU TRP SER HIS PHE GLY HELIX 1 1 PHE A 7 GLU A 28 1 22 HELIX 2 2 GLU A 28 LEU A 48 1 21 HELIX 3 3 ASP A 51 HIS A 87 1 37 HELIX 4 4 GLY A 91 PHE A 120 1 30 HELIX 5 5 PHE B 7 GLU B 28 1 22 HELIX 6 6 GLU B 28 CYS B 46 1 19 HELIX 7 7 ASP B 51 TYR B 86 1 36 HELIX 8 8 GLY B 91 PHE B 120 1 30 HELIX 9 9 TYR C 16 GLU C 28 1 13 HELIX 10 10 GLU C 28 LEU C 48 1 21 HELIX 11 11 ASP C 51 GLY C 83 1 33 HELIX 12 12 HIS C 87 HIS C 119 1 33 CRYST1 72.740 72.740 198.990 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013748 0.007937 0.000000 0.00000 SCALE2 0.000000 0.015874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005025 0.00000