HEADER OXIDOREDUCTASE 03-DEC-12 3ZE7 TITLE 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS TITLE 2 HILDENBOROUGH IN THE REDUCED STATE AT 1.95 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 35-317; COMPND 5 EC: 1.12.7.2; COMPND 6 OTHER_DETAILS: CYSTEINE B 75 IS OXIDIZED TO CYSTEINE SULFINIC ACID; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, COMPND 9 SELENOCYSTEINE-CONTAINING; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 12-495; COMPND 12 EC: 1.12.7.2; COMPND 13 OTHER_DETAILS: CYSTEINE B 75 IS OXIDIZED TO CYSTEINE SULFINIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 7 ORGANISM_TAXID: 882; SOURCE 8 STRAIN: HILDENBOROUGH KEYWDS OXIDOREDUCTASE, HYDROGENASE BIOHYDROGEN OXYGEN TOLERANCE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.MARQUES,R.COELHO,I.A.C.PEREIRA,P.M.MATIAS REVDAT 5 20-DEC-23 3ZE7 1 REMARK LINK REVDAT 4 15-MAY-19 3ZE7 1 REMARK LINK REVDAT 3 05-NOV-14 3ZE7 1 REMARK SEQRES MODRES HET REVDAT 3 2 1 HETNAM HETSYN FORMUL HELIX REVDAT 3 3 1 LINK SITE HETATM ANISOU REVDAT 3 4 1 CONECT MASTER REVDAT 2 19-FEB-14 3ZE7 1 JRNL REMARK SEQRES HET REVDAT 2 2 1 HETNAM FORMUL HELIX LINK REVDAT 2 3 1 SITE ATOM ANISOU HETATM REVDAT 2 4 1 CONECT REVDAT 1 12-JUN-13 3ZE7 0 JRNL AUTH M.C.MARQUES,R.COELHO,I.A.C.PEREIRA,P.M.MATIAS JRNL TITL REDOX STATE-DEPENDENT CHANGES IN THE CRYSTAL STRUCTURE OF JRNL TITL 2 [NIFESE] HYDROGENASE FROM DESULFOVIBRIO VULGARIS JRNL TITL 3 HILDENBOROUGH JRNL REF INT.J.HYDROGEN ENERGY V. 38 8664 2013 JRNL REFN ISSN 0360-3199 JRNL DOI 10.1016/J.IJHYDENE.2013.04.132 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.MARQUES,R.COELHO,A.L.DE LACEY,I.A.C.PEREIRA,P.M.MATIAS REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF [NIFESE] HYDROGENASE FROM REMARK 1 TITL 2 DESULFOVIBRIO VULGARIS HILDENBOROUGH: A HYDROGENASE WITHOUT REMARK 1 TITL 3 A BRIDGING LIGAND IN THE ACTIVE SITE IN ITS OXIDISED, REMARK 1 TITL 4 "AS-ISOLATED" STATE. REMARK 1 REF J.MOL.BIOL. V. 396 893 2010 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 20026074 REMARK 1 DOI 10.1016/J.JMB.2009.12.013 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 53459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7915 - 6.0550 0.99 3236 145 0.1637 0.1965 REMARK 3 2 6.0550 - 4.8077 1.00 3234 186 0.1396 0.1607 REMARK 3 3 4.8077 - 4.2005 1.00 3256 178 0.1033 0.1360 REMARK 3 4 4.2005 - 3.8166 0.99 3261 137 0.1145 0.1341 REMARK 3 5 3.8166 - 3.5432 0.99 3197 204 0.1267 0.1433 REMARK 3 6 3.5432 - 3.3343 0.99 3208 187 0.1344 0.1508 REMARK 3 7 3.3343 - 3.1674 0.99 3243 178 0.1323 0.1675 REMARK 3 8 3.1674 - 3.0295 1.00 3247 179 0.1397 0.1686 REMARK 3 9 3.0295 - 2.9129 1.00 3276 163 0.1379 0.1655 REMARK 3 10 2.9129 - 2.8124 1.00 3231 166 0.1407 0.1869 REMARK 3 11 2.8124 - 2.7245 1.00 3318 153 0.1400 0.1907 REMARK 3 12 2.7245 - 2.6466 1.00 3222 174 0.1467 0.1903 REMARK 3 13 2.6466 - 2.5770 1.00 3203 167 0.1528 0.2270 REMARK 3 14 2.5770 - 2.5141 1.00 3285 170 0.1517 0.2068 REMARK 3 15 2.5141 - 2.4569 1.00 3273 154 0.1522 0.2128 REMARK 3 16 2.4569 - 2.4047 1.00 3192 177 0.1524 0.2068 REMARK 3 17 2.4047 - 2.3566 1.00 3267 177 0.1577 0.2182 REMARK 3 18 2.3566 - 2.3121 1.00 3246 170 0.1579 0.2202 REMARK 3 19 2.3121 - 2.2708 0.99 3228 181 0.1640 0.2027 REMARK 3 20 2.2708 - 2.2323 0.97 3159 202 0.1934 0.2507 REMARK 3 21 2.2323 - 2.1963 0.99 3171 181 0.1852 0.2422 REMARK 3 22 2.1963 - 2.1625 1.00 3270 145 0.1847 0.1958 REMARK 3 23 2.1625 - 2.1307 1.00 3271 180 0.1756 0.2488 REMARK 3 24 2.1307 - 2.1007 1.00 3299 150 0.1853 0.2591 REMARK 3 25 2.1007 - 2.0723 1.00 3195 152 0.1989 0.2205 REMARK 3 26 2.0723 - 2.0454 0.99 3267 164 0.1964 0.2307 REMARK 3 27 2.0454 - 2.0198 1.00 3193 190 0.1977 0.2200 REMARK 3 28 2.0198 - 1.9955 1.00 3291 143 0.1974 0.2602 REMARK 3 29 1.9955 - 1.9723 1.00 3237 196 0.2100 0.2508 REMARK 3 30 1.9723 - 1.9501 0.82 2649 143 0.2365 0.2466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 35.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69320 REMARK 3 B22 (A**2) : -3.95260 REMARK 3 B33 (A**2) : 4.64580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6071 REMARK 3 ANGLE : 1.146 8228 REMARK 3 CHIRALITY : 0.075 896 REMARK 3 PLANARITY : 0.006 1067 REMARK 3 DIHEDRAL : 14.374 2251 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 7:54) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8011 -21.5469 37.4661 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1116 REMARK 3 T33: 0.0691 T12: 0.0034 REMARK 3 T13: -0.0157 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.6015 L22: 0.1868 REMARK 3 L33: 0.0252 L12: -0.0085 REMARK 3 L13: -0.0147 L23: -0.0703 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: -0.1515 S13: 0.0501 REMARK 3 S21: 0.1243 S22: 0.0290 S23: 0.0099 REMARK 3 S31: -0.0088 S32: 0.0271 S33: 0.0058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 55:71) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1097 -29.9953 38.2794 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.1001 REMARK 3 T33: 0.1030 T12: 0.0150 REMARK 3 T13: -0.0172 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.9373 L22: 1.7242 REMARK 3 L33: 2.9401 L12: 0.4260 REMARK 3 L13: -0.5976 L23: -1.4801 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.1481 S13: -0.0341 REMARK 3 S21: 0.0810 S22: 0.0029 S23: -0.1905 REMARK 3 S31: -0.0450 S32: 0.2356 S33: 0.0457 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 72:149) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2234 -37.7110 28.9266 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0692 REMARK 3 T33: 0.0936 T12: 0.0079 REMARK 3 T13: 0.0080 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.6318 L22: 0.3319 REMARK 3 L33: 0.3518 L12: -0.0857 REMARK 3 L13: 0.1508 L23: -0.0872 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.0317 S13: -0.0513 REMARK 3 S21: 0.0013 S22: -0.0027 S23: -0.0527 REMARK 3 S31: 0.0376 S32: 0.0433 S33: 0.0481 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 150:283) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0787 -29.8739 38.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0915 REMARK 3 T33: 0.0636 T12: 0.0013 REMARK 3 T13: 0.0255 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.5236 L22: 0.5520 REMARK 3 L33: 0.2494 L12: -0.1132 REMARK 3 L13: -0.0499 L23: -0.0688 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.1437 S13: -0.0409 REMARK 3 S21: 0.1357 S22: 0.0612 S23: 0.1291 REMARK 3 S31: 0.0098 S32: -0.0310 S33: -0.0203 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 284) REMARK 3 ORIGIN FOR THE GROUP (A): -45.9952 -28.8055 35.1626 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.1424 REMARK 3 T33: 0.2142 T12: -0.0024 REMARK 3 T13: 0.0548 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.6657 L22: 4.2530 REMARK 3 L33: 5.7765 L12: 1.6827 REMARK 3 L13: 1.9609 L23: 4.9566 REMARK 3 S TENSOR REMARK 3 S11: -0.0554 S12: -0.1477 S13: 0.0399 REMARK 3 S21: -0.1466 S22: 0.0149 S23: -0.0413 REMARK 3 S31: -0.0415 S32: 0.1868 S33: 0.0592 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 285) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5956 -27.1987 34.1210 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1538 REMARK 3 T33: 0.1283 T12: 0.0046 REMARK 3 T13: 0.0260 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.9030 L22: 8.2153 REMARK 3 L33: 0.6422 L12: 6.3387 REMARK 3 L13: 1.6193 L23: 2.0465 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: -0.0271 S13: 0.1520 REMARK 3 S21: -0.1110 S22: -0.0692 S23: -0.0142 REMARK 3 S31: 0.1355 S32: -0.0523 S33: -0.0226 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 286) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0249 -28.5452 28.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.1296 REMARK 3 T33: 0.1124 T12: 0.0062 REMARK 3 T13: 0.0162 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.0225 L22: 4.1501 REMARK 3 L33: 4.1497 L12: 1.4736 REMARK 3 L13: -1.2222 L23: -4.0956 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.0208 S13: 0.0178 REMARK 3 S21: 0.0523 S22: 0.0411 S23: -0.0280 REMARK 3 S31: 0.1287 S32: -0.0102 S33: -0.0586 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 15:46) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8590 -21.1242 16.8181 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: 0.0894 REMARK 3 T33: 0.0972 T12: 0.0048 REMARK 3 T13: 0.0124 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.2763 L22: 0.9441 REMARK 3 L33: 1.0768 L12: 0.3962 REMARK 3 L13: -0.4866 L23: -0.2163 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: 0.0460 S13: -0.1083 REMARK 3 S21: -0.0357 S22: 0.0221 S23: -0.1513 REMARK 3 S31: 0.0865 S32: 0.1054 S33: 0.0400 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 47:144) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0278 -18.4753 21.9264 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.0611 REMARK 3 T33: 0.0545 T12: 0.0028 REMARK 3 T13: -0.0001 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2353 L22: 0.3777 REMARK 3 L33: 0.1659 L12: 0.0148 REMARK 3 L13: -0.1008 L23: -0.0035 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.0216 S13: 0.0029 REMARK 3 S21: 0.0340 S22: 0.0061 S23: 0.0287 REMARK 3 S31: 0.0020 S32: 0.0077 S33: -0.0027 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 145:255) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0980 -6.2763 27.0634 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.0547 REMARK 3 T33: 0.0793 T12: 0.0072 REMARK 3 T13: 0.0003 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.4826 L22: 0.2337 REMARK 3 L33: 0.2383 L12: 0.1097 REMARK 3 L13: -0.0688 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.0515 S13: 0.0705 REMARK 3 S21: 0.0604 S22: 0.0036 S23: 0.0085 REMARK 3 S31: -0.0438 S32: -0.0142 S33: -0.0149 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 256:308) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1129 -20.5881 3.0043 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.1125 REMARK 3 T33: 0.0420 T12: 0.0054 REMARK 3 T13: -0.0058 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.4269 L22: 0.8466 REMARK 3 L33: 0.4483 L12: -0.1273 REMARK 3 L13: 0.0641 L23: -0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.0949 S13: -0.0522 REMARK 3 S21: -0.1732 S22: 0.0086 S23: 0.0236 REMARK 3 S31: 0.0596 S32: -0.0377 S33: 0.0151 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 309:495) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2375 -12.2070 13.4498 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.0717 REMARK 3 T33: 0.0739 T12: -0.0050 REMARK 3 T13: 0.0010 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.3531 L22: 0.3175 REMARK 3 L33: 0.1591 L12: -0.0073 REMARK 3 L13: -0.0697 L23: -0.0815 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.0297 S13: 0.0409 REMARK 3 S21: -0.0433 S22: -0.0103 S23: -0.0169 REMARK 3 S31: -0.0182 S32: -0.0077 S33: 0.0022 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 500:501) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8044 -18.5519 18.6665 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1287 REMARK 3 T33: 0.1712 T12: 0.0039 REMARK 3 T13: -0.0022 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 4.8074 L22: 6.4552 REMARK 3 L33: 6.0050 L12: -5.2737 REMARK 3 L13: 2.7193 L23: -4.7092 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.1443 S13: -0.1960 REMARK 3 S21: 0.1241 S22: 0.1542 S23: 0.1379 REMARK 3 S31: 0.0508 S32: -0.1804 S33: -0.1640 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT PROTOCOL INCLUDED ANOMALOUS REMARK 3 DIFFERENCES REMARK 4 REMARK 4 3ZE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290054979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WPN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN USING THE SITTING REMARK 280 -DROP VAPOR DIFFUSION METHOD AT 20C BY MIXING 1.5 UL OF REMARK 280 RESERVOIR SOLUTION CONTAINING 20% POLYETHYLENE GLYCOL (PEG) 1500, REMARK 280 0.1 M TRIS-HCL, PH 8.5 AND AN EQUAL VOLUME OF A SOLUTION REMARK 280 COMPOSED OF 10 MG/ML OF PROTEIN IN 10 MM TRIS-HCL BUFFER AT PH REMARK 280 7.6., PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.14850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.92750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.49350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.92750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.14850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.49350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 THR B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2106 O HOH B 2344 1.96 REMARK 500 O HOH B 2155 O HOH B 2156 1.99 REMARK 500 OE2 GLU B 390 O HOH B 2397 2.02 REMARK 500 O HOH A 2044 O HOH A 2126 2.05 REMARK 500 O HOH A 2175 O HOH A 2178 2.09 REMARK 500 O HOH B 2271 O HOH B 2438 2.10 REMARK 500 O HOH B 2194 O HOH B 2195 2.10 REMARK 500 O GLY B 15 O HOH B 2004 2.14 REMARK 500 O HOH A 2230 O HOH A 2231 2.14 REMARK 500 O HOH B 2158 O HOH B 2348 2.16 REMARK 500 O HOH B 2055 O HOH B 2191 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 46 116.37 -163.13 REMARK 500 HIS A 96 -6.58 80.10 REMARK 500 GLU A 134 26.69 -147.87 REMARK 500 LYS A 251 -163.05 60.07 REMARK 500 ALA A 263 -105.88 -155.72 REMARK 500 HIS B 185 80.02 69.92 REMARK 500 PHE B 251 80.84 67.14 REMARK 500 LYS B 258 -83.51 -89.35 REMARK 500 TYR B 313 16.48 -141.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A2053 DISTANCE = 6.85 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 S-OXY CYSTEINE (OCS): CYSTEINE SULFINIC ACID CYS-SO2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 SF4 A 286 S2 121.4 REMARK 620 3 SF4 A 286 S3 113.8 104.2 REMARK 620 4 SF4 A 286 S4 102.6 108.6 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 SF4 A 286 S1 106.8 REMARK 620 3 SF4 A 286 S2 114.5 101.4 REMARK 620 4 SF4 A 286 S4 119.8 102.3 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 121 SG REMARK 620 2 SF4 A 286 S1 113.0 REMARK 620 3 SF4 A 286 S2 130.4 101.2 REMARK 620 4 SF4 A 286 S3 97.4 108.7 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 286 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 159 SG REMARK 620 2 SF4 A 286 S1 114.5 REMARK 620 3 SF4 A 286 S3 101.3 108.7 REMARK 620 4 SF4 A 286 S4 125.0 101.4 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 208 ND1 REMARK 620 2 SF4 A 284 S1 102.3 REMARK 620 3 SF4 A 284 S2 116.9 106.2 REMARK 620 4 SF4 A 284 S3 119.9 105.2 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 211 SG REMARK 620 2 SF4 A 284 S1 114.4 REMARK 620 3 SF4 A 284 S2 106.8 106.3 REMARK 620 4 SF4 A 284 S4 118.6 103.7 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 232 SG REMARK 620 2 SF4 A 284 S1 118.4 REMARK 620 3 SF4 A 284 S3 101.2 105.7 REMARK 620 4 SF4 A 284 S4 121.9 103.8 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 238 SG REMARK 620 2 SF4 A 284 S2 111.2 REMARK 620 3 SF4 A 284 S3 115.2 104.3 REMARK 620 4 SF4 A 284 S4 115.0 106.0 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 247 SG REMARK 620 2 SF4 A 285 S1 112.1 REMARK 620 3 SF4 A 285 S2 127.1 104.0 REMARK 620 4 SF4 A 285 S4 102.4 105.6 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 259 SG REMARK 620 2 SF4 A 285 S1 107.3 REMARK 620 3 SF4 A 285 S3 118.7 107.3 REMARK 620 4 SF4 A 285 S4 112.9 104.9 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 265 SG REMARK 620 2 SF4 A 285 S1 111.1 REMARK 620 3 SF4 A 285 S2 114.7 103.9 REMARK 620 4 SF4 A 285 S3 113.9 107.1 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 268 SG REMARK 620 2 SF4 A 285 S2 119.8 REMARK 620 3 SF4 A 285 S3 114.8 105.7 REMARK 620 4 SF4 A 285 S4 106.7 103.0 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 56 OE2 REMARK 620 2 ILE B 441 O 92.1 REMARK 620 3 HIS B 495 NE2 89.6 90.8 REMARK 620 4 HOH B2059 O 93.1 174.4 91.3 REMARK 620 5 HOH B2060 O 85.3 87.6 174.6 90.7 REMARK 620 6 HOH B2318 O 172.1 90.3 97.9 84.3 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS B 75 SG REMARK 620 2 CYS B 78 SG 97.8 REMARK 620 3 SEC B 489 SE 84.7 176.4 REMARK 620 4 CYS B 492 SG 103.3 75.5 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FCO B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 78 SG REMARK 620 2 FCO B 500 C1 161.9 REMARK 620 3 FCO B 500 C2 91.9 91.7 REMARK 620 4 FCO B 500 C3 104.9 92.2 98.0 REMARK 620 5 CYS B 492 SG 80.2 94.0 170.0 90.0 REMARK 620 6 NI B 501 NI 58.4 103.7 108.4 148.4 62.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FCO B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZE6 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE AS-ISOLATED OXIDIZED STATE AT 1.50 ANGSTROMS REMARK 900 RELATED ID: 3ZE8 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE REDUCED STATE AT 1.95 ANGSTROMS REMARK 900 RELATED ID: 3ZE9 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NIFESE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE OXIDIZED AS-ISOLATED STATE AT 1.33 ANGSTROMS REMARK 900 RELATED ID: 3ZEA RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NIFESE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE REDUCED STATE AT 1.82 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 SIGNAL PEPTIDE CLEAVED OFF MATURE PROTEIN DBREF 3ZE7 A 1 283 UNP Q72AS4 Q72AS4_DESVH 35 317 DBREF 3ZE7 B 12 495 UNP Q72AS3 Q72AS3_DESVH 12 495 SEQRES 1 A 283 GLY THR LEU THR GLY GLU ARG PRO PRO VAL PHE TRP LEU SEQRES 2 A 283 GLN GLY GLN GLY CYS THR GLY CYS SER VAL THR LEU LEU SEQRES 3 A 283 ASN SER VAL HIS PRO SER ILE ALA ASP VAL LEU LEU LYS SEQRES 4 A 283 VAL ILE SER LEU GLU PHE HIS PRO THR VAL MET ALA TRP SEQRES 5 A 283 GLU GLY GLU HIS ALA ILE GLU HIS MET ARG LYS VAL ALA SEQRES 6 A 283 GLU LYS PHE LYS GLY LYS PHE PHE LEU VAL ILE GLU GLY SEQRES 7 A 283 SER VAL PRO VAL GLU ALA ASP GLY LYS TYR CYS ILE ILE SEQRES 8 A 283 GLY GLU ALA ASN HIS HIS GLU ILE SER MET VAL ASP ALA SEQRES 9 A 283 LEU LYS GLU PHE GLY PRO ASN ALA ALA ALA VAL LEU ALA SEQRES 10 A 283 VAL GLY THR CYS ALA ALA TYR GLY GLY ILE PRO ALA ALA SEQRES 11 A 283 GLU GLY SER GLU THR GLY ALA THR ALA VAL SER LYS PHE SEQRES 12 A 283 LEU GLY ASP ASN GLY ILE LYS THR PRO VAL VAL ASN ILE SEQRES 13 A 283 PRO GLY CYS PRO PRO HIS PRO ASP TRP ILE VAL GLY THR SEQRES 14 A 283 VAL VAL LEU ALA LEU ASP ALA ILE LYS LYS ASN GLY LEU SEQRES 15 A 283 GLU GLY GLY LEU ALA GLU VAL VAL LYS VAL LEU ASP SER SEQRES 16 A 283 ASP GLY ARG PRO THR PRO PHE PHE GLY ARG ASN ILE HIS SEQRES 17 A 283 GLU ASN CYS PRO TYR LEU ASP LYS TYR ASP GLU GLY VAL SEQRES 18 A 283 MET SER ALA THR PHE THR ASP LYS VAL GLY CYS ARG TYR SEQRES 19 A 283 ASP LEU GLY CYS LYS GLY PRO MET THR MET ALA ASP CYS SEQRES 20 A 283 PHE GLU ARG LYS TRP ASN GLY GLY VAL ASN TRP CYS VAL SEQRES 21 A 283 GLN ASN ALA VAL CYS ILE GLY CYS VAL GLU PRO ASP PHE SEQRES 22 A 283 PRO ASP GLY LYS SER PRO PHE TYR GLN ALA SEQRES 1 B 484 GLY ALA THR GLY ARG THR THR ILE ALA ILE ASP PRO VAL SEQRES 2 B 484 THR ARG ILE GLU GLY HIS LEU LYS ALA GLU VAL VAL VAL SEQRES 3 B 484 GLU ASN GLY LYS VAL VAL ASP ALA ARG LEU SER GLY GLY SEQRES 4 B 484 MET TYR ARG GLY PHE GLU THR ILE LEU ARG GLY ARG ASP SEQRES 5 B 484 PRO ARG ASP ALA SER GLN ILE VAL GLN ARG ILE OCS GLY SEQRES 6 B 484 VAL CYS PRO THR ALA HIS SER THR ALA SER VAL LEU ALA SEQRES 7 B 484 LEU ASP GLU ALA PHE GLY ALA LYS VAL PRO ASN ASN GLY SEQRES 8 B 484 ARG ILE THR ARG ASN LEU ILE PHE GLY ALA ASN TYR LEU SEQRES 9 B 484 GLN SER HIS ILE LEU HIS PHE TYR HIS LEU SER ALA GLN SEQRES 10 B 484 ASP PHE VAL GLN GLY PRO ASP THR ALA PRO PHE VAL PRO SEQRES 11 B 484 ARG PHE PRO LYS SER ASP LEU ARG LEU SER LYS GLU LEU SEQRES 12 B 484 ASN LYS ALA GLY VAL ASP GLN TYR ILE GLU ALA LEU GLU SEQRES 13 B 484 VAL ARG ARG ILE CYS HIS GLU MET VAL ALA LEU PHE GLY SEQRES 14 B 484 GLY ARG MET PRO HIS VAL GLN GLY GLN VAL VAL GLY GLY SEQRES 15 B 484 ALA THR GLU ILE PRO THR LYS GLU LYS LEU VAL GLU TYR SEQRES 16 B 484 ALA ALA ARG PHE LYS LYS VAL ARG ASP PHE VAL GLU GLN SEQRES 17 B 484 LYS TYR VAL PRO VAL VAL TYR THR ILE GLY SER LYS TYR SEQRES 18 B 484 LYS ASP MET PHE LYS VAL GLY GLN GLY PHE LYS ALA ALA SEQRES 19 B 484 LEU CYS VAL GLY ALA PHE PRO LEU ASP ASN SER GLY LYS SEQRES 20 B 484 LYS HIS LEU PHE MET PRO GLY VAL TYR ALA LYS GLY LYS SEQRES 21 B 484 ASP MET PRO PHE ASP PRO SER LYS ILE LYS GLU TYR VAL SEQRES 22 B 484 LYS TYR SER TRP PHE ALA GLU GLU THR THR GLY LEU ASN SEQRES 23 B 484 TYR LYS GLU GLY LYS THR ILE PRO ALA PRO ASP LYS ALA SEQRES 24 B 484 GLY ALA TYR SER PHE VAL LYS ALA PRO ARG TYR ASP GLY SEQRES 25 B 484 LEU SER LEU GLU VAL GLY PRO LEU ALA ARG MET TRP VAL SEQRES 26 B 484 ASN ASN PRO GLU LEU SER PRO VAL GLY LYS LYS LEU LEU SEQRES 27 B 484 LYS ASP LEU PHE GLY ILE SER ALA LYS LYS PHE ARG ASP SEQRES 28 B 484 LEU GLY GLU GLU ALA ALA PHE SER LEU MET GLY ARG HIS SEQRES 29 B 484 VAL ALA ARG ALA GLU GLU THR TYR TYR MET LEU GLY ALA SEQRES 30 B 484 ILE GLU GLY TRP LEU LYS GLU ILE LYS ALA GLY GLU ASP SEQRES 31 B 484 THR VAL VAL MET PRO ALA VAL PRO ALA SER ALA GLU GLY SEQRES 32 B 484 THR GLY PHE THR GLU ALA PRO ARG GLY SER LEU LEU HIS SEQRES 33 B 484 TYR VAL LYS VAL LYS ASP SER LYS ILE ASP ASN TYR GLN SEQRES 34 B 484 ILE VAL SER ALA SER LEU TRP ASN CYS ASN PRO ARG ASP SEQRES 35 B 484 ASP MET GLY GLN ARG GLY ALA VAL GLU GLU ALA LEU ILE SEQRES 36 B 484 GLY ILE PRO VAL ASP ASP ILE GLN ASN PRO VAL ASN VAL SEQRES 37 B 484 ALA ARG LEU ILE ARG ALA PHE ASP PRO SEC LEU GLY CYS SEQRES 38 B 484 ALA VAL HIS MODRES 3ZE7 OCS B 75 CYS CYSTEINESULFONIC ACID HET OCS B 75 8 HET SF4 A 284 8 HET SF4 A 285 8 HET SF4 A 286 8 HET FCO B 500 7 HET NI B 501 1 HET FE2 B 502 1 HET H2S B 503 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FCO CARBONMONOXIDE-(DICYANO) IRON HETNAM NI NICKEL (II) ION HETNAM FE2 FE (II) ION HETNAM H2S HYDROSULFURIC ACID HETSYN H2S HYDROGEN SULFIDE FORMUL 2 OCS C3 H7 N O5 S FORMUL 3 SF4 3(FE4 S4) FORMUL 6 FCO C3 FE N2 O FORMUL 7 NI NI 2+ FORMUL 8 FE2 FE 2+ FORMUL 9 H2S H2 S FORMUL 10 HOH *734(H2 O) HELIX 1 1 THR A 19 ASN A 27 1 9 HELIX 2 2 SER A 32 VAL A 40 1 9 HELIX 3 3 GLU A 53 PHE A 68 1 16 HELIX 4 4 GLU A 83 LYS A 87 5 5 HELIX 5 5 MET A 101 GLY A 109 1 9 HELIX 6 6 PRO A 110 ALA A 112 5 3 HELIX 7 7 GLY A 119 GLY A 125 1 7 HELIX 8 8 GLY A 126 ALA A 130 5 5 HELIX 9 9 ALA A 139 ASN A 147 1 9 HELIX 10 10 HIS A 162 VAL A 192 1 31 HELIX 11 11 PRO A 199 GLY A 204 1 6 HELIX 12 12 ILE A 207 CYS A 211 5 5 HELIX 13 13 TYR A 213 GLY A 220 1 8 HELIX 14 14 ARG A 233 GLY A 237 5 5 HELIX 15 15 LYS A 239 THR A 243 5 5 HELIX 16 16 ASP A 246 LYS A 251 1 6 HELIX 17 17 TRP A 258 ALA A 263 1 6 HELIX 18 18 PRO A 274 SER A 278 5 5 HELIX 19 19 GLY B 54 LEU B 59 1 6 HELIX 20 20 ASP B 63 ARG B 65 5 3 HELIX 21 21 ASP B 66 VAL B 71 1 6 HELIX 22 22 GLN B 72 OCS B 75 5 4 HELIX 23 23 CYS B 78 GLY B 95 1 18 HELIX 24 24 PRO B 99 LEU B 125 1 27 HELIX 25 25 SER B 126 PHE B 130 5 5 HELIX 26 26 SER B 151 GLY B 181 1 31 HELIX 27 27 THR B 199 LYS B 220 1 22 HELIX 28 28 LYS B 220 TYR B 232 1 13 HELIX 29 29 LYS B 233 LYS B 237 5 5 HELIX 30 30 ASP B 276 SER B 278 5 3 HELIX 31 31 ALA B 290 THR B 294 5 5 HELIX 32 32 ASN B 297 GLY B 301 5 5 HELIX 33 33 GLY B 329 ASN B 338 1 10 HELIX 34 34 SER B 342 GLY B 354 1 13 HELIX 35 35 PHE B 360 LEU B 363 5 4 HELIX 36 36 GLY B 364 PHE B 369 1 6 HELIX 37 37 SER B 370 ILE B 396 1 27 HELIX 38 38 SER B 443 CYS B 449 1 7 HELIX 39 39 GLY B 459 ILE B 466 1 8 HELIX 40 40 VAL B 477 PHE B 486 1 10 HELIX 41 41 SEC B 489 HIS B 495 1 7 SHEET 1 AA 5 SER A 42 PHE A 45 0 SHEET 2 AA 5 PRO A 9 GLN A 14 1 O VAL A 10 N GLU A 44 SHEET 3 AA 5 PHE A 73 GLU A 77 1 O PHE A 73 N PHE A 11 SHEET 4 AA 5 ALA A 114 VAL A 118 1 O ALA A 114 N LEU A 74 SHEET 5 AA 5 VAL A 153 ILE A 156 1 O VAL A 154 N ALA A 117 SHEET 1 AB 2 VAL A 80 PRO A 81 0 SHEET 2 AB 2 ALA A 137 THR A 138 -1 O THR A 138 N VAL A 80 SHEET 1 AC 2 ILE A 90 ALA A 94 0 SHEET 2 AC 2 HIS A 97 SER A 100 -1 O HIS A 97 N ALA A 94 SHEET 1 BA 3 THR B 17 ILE B 21 0 SHEET 2 BA 3 LEU B 31 GLU B 38 -1 O ALA B 33 N ILE B 21 SHEET 3 BA 3 LYS B 41 GLY B 49 -1 O LYS B 41 N GLU B 38 SHEET 1 BB 2 GLN B 189 VAL B 190 0 SHEET 2 BB 2 GLY B 193 ALA B 194 -1 O GLY B 193 N VAL B 190 SHEET 1 BC 3 ALA B 245 CYS B 247 0 SHEET 2 BC 3 GLY B 265 ALA B 268 -1 O GLY B 265 N CYS B 247 SHEET 3 BC 3 LYS B 271 MET B 273 -1 O LYS B 271 N ALA B 268 SHEET 1 BD 2 ALA B 250 PRO B 252 0 SHEET 2 BD 2 HIS B 260 PHE B 262 -1 N LEU B 261 O PHE B 251 SHEET 1 BE 2 ILE B 280 TYR B 283 0 SHEET 2 BE 2 ALA B 318 TYR B 321 -1 O ALA B 318 N TYR B 283 SHEET 1 BF 3 ALA B 412 ALA B 420 0 SHEET 2 BF 3 GLY B 423 LYS B 432 -1 O GLY B 423 N ALA B 420 SHEET 3 BF 3 LYS B 435 VAL B 442 -1 O LYS B 435 N LYS B 432 SSBOND 1 CYS B 78 CYS B 492 1555 1555 2.96 LINK C ILE B 74 N OCS B 75 1555 1555 1.33 LINK C OCS B 75 N GLY B 76 1555 1555 1.33 LINK SG CYS A 18 FE1 SF4 A 286 1555 1555 2.26 LINK SG CYS A 21 FE3 SF4 A 286 1555 1555 2.27 LINK SG CYS A 121 FE4 SF4 A 286 1555 1555 2.28 LINK SG CYS A 159 FE2 SF4 A 286 1555 1555 2.29 LINK ND1 HIS A 208 FE4 SF4 A 284 1555 1555 2.08 LINK SG CYS A 211 FE3 SF4 A 284 1555 1555 2.26 LINK SG CYS A 232 FE2 SF4 A 284 1555 1555 2.28 LINK SG CYS A 238 FE1 SF4 A 284 1555 1555 2.36 LINK SG CYS A 247 FE3 SF4 A 285 1555 1555 2.23 LINK SG CYS A 259 FE2 SF4 A 285 1555 1555 2.25 LINK SG CYS A 265 FE4 SF4 A 285 1555 1555 2.32 LINK SG CYS A 268 FE1 SF4 A 285 1555 1555 2.34 LINK OE2 GLU B 56 FE FE2 B 502 1555 1555 2.22 LINK SG OCS B 75 NI NI B 501 1555 1555 2.19 LINK SG CYS B 78 FE FCO B 500 1555 1555 2.27 LINK SG CYS B 78 NI NI B 501 1555 1555 2.34 LINK O ILE B 441 FE FE2 B 502 1555 1555 2.29 LINK SE SEC B 489 NI NI B 501 1555 1555 2.27 LINK SG CYS B 492 FE FCO B 500 1555 1555 2.34 LINK SG CYS B 492 NI NI B 501 1555 1555 2.50 LINK NE2 HIS B 495 FE FE2 B 502 1555 1555 2.26 LINK FE FCO B 500 NI NI B 501 1555 1555 2.50 LINK FE FE2 B 502 O HOH B2059 1555 1555 2.39 LINK FE FE2 B 502 O HOH B2060 1555 1555 2.24 LINK FE FE2 B 502 O HOH B2318 1555 1555 2.37 CISPEP 1 HIS A 30 PRO A 31 0 -2.56 CISPEP 2 HIS A 30 PRO A 31 0 -0.95 CISPEP 3 CYS A 159 PRO A 160 0 -0.15 CISPEP 4 PHE A 273 PRO A 274 0 6.44 CISPEP 5 SER A 278 PRO A 279 0 -3.29 CISPEP 6 ASP B 22 PRO B 23 0 4.04 CISPEP 7 ALA B 137 PRO B 138 0 0.78 CISPEP 8 VAL B 140 PRO B 141 0 -2.79 CISPEP 9 MET B 183 PRO B 184 0 0.88 SITE 1 AC1 8 HIS A 208 CYS A 211 TYR A 213 LEU A 214 SITE 2 AC1 8 CYS A 232 ARG A 233 CYS A 238 VAL A 260 SITE 1 AC2 9 THR A 243 CYS A 247 TRP A 252 CYS A 259 SITE 2 AC2 9 CYS A 265 ILE A 266 CYS A 268 ARG B 182 SITE 3 AC2 9 GLN B 187 SITE 1 AC3 9 CYS A 18 CYS A 21 GLY A 119 THR A 120 SITE 2 AC3 9 CYS A 121 GLY A 158 CYS A 159 ARG B 73 SITE 3 AC3 9 HIS B 185 SITE 1 AC4 11 CYS B 78 HIS B 82 ALA B 420 PRO B 421 SITE 2 AC4 11 ARG B 422 LEU B 425 ALA B 444 SER B 445 SITE 3 AC4 11 SEC B 489 CYS B 492 NI B 501 SITE 1 AC5 5 OCS B 75 CYS B 78 SEC B 489 CYS B 492 SITE 2 AC5 5 FCO B 500 SITE 1 AC6 6 GLU B 56 ILE B 441 HIS B 495 HOH B2059 SITE 2 AC6 6 HOH B2060 HOH B2318 SITE 1 AC7 6 CYS B 78 THR B 80 ALA B 81 PHE B 110 SITE 2 AC7 6 ASN B 113 PRO B 421 CRYST1 72.297 96.987 103.855 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009629 0.00000