HEADER OXIDOREDUCTASE 03-DEC-12 3ZE9 TITLE 3D STRUCTURE OF THE NIFESE HYDROGENASE FROM D. VULGARIS HILDENBOROUGH TITLE 2 IN THE OXIDIZED AS-ISOLATED STATE AT 1.33 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 35-317; COMPND 5 EC: 1.12.7.2; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, COMPND 8 SELENOCYSTEINE-CONTAINING; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 12-495; COMPND 11 EC: 1.12.7.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 7 ORGANISM_TAXID: 882; SOURCE 8 STRAIN: HILDENBOROUGH KEYWDS OXIDOREDUCTASE, HYDROGENASE BIOHYDROGEN OXYGEN TOLERANCE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.MARQUES,R.COELHO,I.A.C.PEREIRA,P.M.MATIAS REVDAT 7 20-DEC-23 3ZE9 1 REMARK LINK REVDAT 6 24-APR-19 3ZE9 1 REMARK SEQRES ATOM REVDAT 5 27-JUN-18 3ZE9 1 REMARK LINK REVDAT 4 05-NOV-14 3ZE9 1 REMARK SEQRES MODRES HET REVDAT 4 2 1 HETNAM HETSYN FORMUL HELIX REVDAT 4 3 1 LINK SITE HETATM ANISOU REVDAT 4 4 1 MASTER REVDAT 3 14-MAY-14 3ZE9 1 HETATM REVDAT 2 19-FEB-14 3ZE9 1 JRNL REMARK SEQADV MODRES REVDAT 2 2 1 HET HETNAM FORMUL HELIX REVDAT 2 3 1 LINK ATOM ANISOU HETATM REVDAT 2 4 1 CONECT REVDAT 1 12-JUN-13 3ZE9 0 JRNL AUTH M.C.MARQUES,R.COELHO,I.A.C.PEREIRA,P.M.MATIAS JRNL TITL REDOX STATE-DEPENDENT CHANGES IN THE CRYSTAL STRUCTURE OF JRNL TITL 2 [NIFESE] HYDROGENASE FROM DESULFOVIBRIO VULGARIS JRNL TITL 3 HILDENBOROUGH JRNL REF INT.J.HYDROGEN ENERGY V. 38 8664 2013 JRNL REFN ISSN 0360-3199 JRNL DOI 10.1016/J.IJHYDENE.2013.04.132 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.MARQUES,R.COELHO,A.L.DE LACEY,I.A.C.PEREIRA,P.M.MATIAS REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF [NIFESE] HYDROGENASE FROM REMARK 1 TITL 2 DESULFOVIBRIO VULGARIS HILDENBOROUGH: A HYDROGENASE WITHOUT REMARK 1 TITL 3 A BRIDGING LIGAND IN THE ACTIVE SITE IN ITS OXIDISED, REMARK 1 TITL 4 "AS-ISOLATED" STATE. REMARK 1 REF J.MOL.BIOL. V. 396 893 2010 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 20026074 REMARK 1 DOI 10.1016/J.JMB.2009.12.013 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 159117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 15046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.9372 - 4.1320 0.92 9267 506 0.1265 0.1437 REMARK 3 2 4.1320 - 3.2798 0.97 9827 485 0.1163 0.1320 REMARK 3 3 3.2798 - 2.8653 0.89 8985 496 0.1246 0.1409 REMARK 3 4 2.8653 - 2.6033 0.95 9518 500 0.1181 0.1299 REMARK 3 5 2.6033 - 2.4167 0.96 9721 450 0.1080 0.1203 REMARK 3 6 2.4167 - 2.2742 0.96 9709 515 0.1075 0.1165 REMARK 3 7 2.2742 - 2.1603 0.90 9103 509 0.1119 0.1350 REMARK 3 8 2.1603 - 2.0663 0.94 9398 495 0.1124 0.1376 REMARK 3 9 2.0663 - 1.9867 0.95 9605 470 0.1151 0.1395 REMARK 3 10 1.9867 - 1.9182 0.96 9705 480 0.1159 0.1356 REMARK 3 11 1.9182 - 1.8582 0.97 9822 535 0.1114 0.1282 REMARK 3 12 1.8582 - 1.8051 0.98 9814 527 0.1138 0.1346 REMARK 3 13 1.8051 - 1.7576 0.94 9393 523 0.1217 0.1409 REMARK 3 14 1.7576 - 1.7147 0.93 9322 475 0.1215 0.1349 REMARK 3 15 1.7147 - 1.6757 0.95 9602 479 0.1217 0.1448 REMARK 3 16 1.6757 - 1.6400 0.96 9669 500 0.1247 0.1351 REMARK 3 17 1.6400 - 1.6072 0.96 9748 521 0.1369 0.1658 REMARK 3 18 1.6072 - 1.5769 0.96 9673 593 0.1462 0.1746 REMARK 3 19 1.5769 - 1.5487 0.97 9582 567 0.1505 0.1587 REMARK 3 20 1.5487 - 1.5225 0.97 9907 474 0.1597 0.1862 REMARK 3 21 1.5225 - 1.4979 0.95 9648 453 0.1781 0.1875 REMARK 3 22 1.4979 - 1.4749 0.91 9163 515 0.2013 0.2073 REMARK 3 23 1.4749 - 1.4532 0.94 9424 506 0.2009 0.2205 REMARK 3 24 1.4532 - 1.4327 0.95 9604 517 0.2184 0.2392 REMARK 3 25 1.4327 - 1.4133 0.96 9532 536 0.2249 0.2126 REMARK 3 26 1.4133 - 1.3950 0.96 9731 506 0.2439 0.2642 REMARK 3 27 1.3950 - 1.3776 0.96 9565 427 0.2543 0.2678 REMARK 3 28 1.3776 - 1.3610 0.97 9876 509 0.2709 0.2781 REMARK 3 29 1.3610 - 1.3451 0.96 9689 526 0.2898 0.2840 REMARK 3 30 1.3451 - 1.3300 0.87 8780 451 0.3024 0.3074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6279 REMARK 3 ANGLE : 1.303 8533 REMARK 3 CHIRALITY : 0.085 928 REMARK 3 PLANARITY : 0.008 1113 REMARK 3 DIHEDRAL : 13.434 2382 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 5:62) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6323 -26.5910 27.1061 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.1608 REMARK 3 T33: 0.1424 T12: 0.0233 REMARK 3 T13: -0.0017 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.2860 L22: 1.7162 REMARK 3 L33: 1.6044 L12: -0.4271 REMARK 3 L13: -0.5051 L23: 0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.0256 S13: -0.0181 REMARK 3 S21: -0.0686 S22: -0.0471 S23: -0.2098 REMARK 3 S31: 0.0564 S32: 0.2904 S33: -0.0105 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 63:108) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2204 -38.2848 21.5206 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.1392 REMARK 3 T33: 0.1704 T12: 0.0373 REMARK 3 T13: -0.0062 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 2.8704 L22: 1.7427 REMARK 3 L33: 1.6938 L12: -0.2417 REMARK 3 L13: -0.2335 L23: -0.4418 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.2010 S13: -0.3091 REMARK 3 S21: -0.2796 S22: -0.0226 S23: -0.0518 REMARK 3 S31: 0.3311 S32: 0.1585 S33: 0.0671 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 109:283) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6877 -29.6595 45.0478 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0870 REMARK 3 T33: 0.1126 T12: 0.0084 REMARK 3 T13: -0.0099 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.8358 L22: 0.8576 REMARK 3 L33: 1.1094 L12: -0.2762 REMARK 3 L13: -0.1275 L23: 0.0567 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.0834 S13: -0.1017 REMARK 3 S21: 0.0428 S22: 0.0377 S23: 0.0255 REMARK 3 S31: 0.0734 S32: -0.0002 S33: -0.0166 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 284) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1560 -22.6677 55.7923 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.1992 REMARK 3 T33: 0.1662 T12: 0.0254 REMARK 3 T13: 0.0099 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 7.4474 L22: 1.8124 REMARK 3 L33: 3.6624 L12: 3.3380 REMARK 3 L13: -5.2144 L23: -2.3971 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.1063 S13: 0.0179 REMARK 3 S21: 0.1380 S22: 0.0918 S23: 0.1407 REMARK 3 S31: -0.0512 S32: 0.0366 S33: -0.0629 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 285) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9146 -23.8676 45.8173 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1873 REMARK 3 T33: 0.2000 T12: 0.0153 REMARK 3 T13: -0.0023 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 7.5133 L22: 7.5169 REMARK 3 L33: 5.9229 L12: -5.8463 REMARK 3 L13: -6.3949 L23: 6.1679 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.0830 S13: 0.1301 REMARK 3 S21: 0.1227 S22: 0.1556 S23: -0.0487 REMARK 3 S31: 0.0018 S32: -0.0094 S33: -0.1328 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 286) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5577 -27.1407 33.3078 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1684 REMARK 3 T33: 0.1797 T12: 0.0180 REMARK 3 T13: -0.0177 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.3146 L22: 5.1658 REMARK 3 L33: 3.3009 L12: -0.7010 REMARK 3 L13: -0.9993 L23: -3.4674 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.2174 S13: -0.1562 REMARK 3 S21: -0.0692 S22: -0.0113 S23: -0.2966 REMARK 3 S31: 0.2784 S32: 0.3743 S33: 0.0164 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 15:236) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5111 -13.3433 26.0543 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.0965 REMARK 3 T33: 0.1117 T12: 0.0126 REMARK 3 T13: -0.0080 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7618 L22: 0.6697 REMARK 3 L33: 1.0745 L12: -0.1418 REMARK 3 L13: -0.3037 L23: -0.0448 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.0240 S13: 0.0532 REMARK 3 S21: -0.0644 S22: 0.0163 S23: -0.0289 REMARK 3 S31: -0.1125 S32: 0.0570 S33: -0.0562 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 237:308) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0578 -11.9943 15.7744 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.2628 REMARK 3 T33: 0.2170 T12: 0.0339 REMARK 3 T13: -0.0436 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 1.2381 L22: 1.6019 REMARK 3 L33: 1.3126 L12: -0.1486 REMARK 3 L13: 0.0006 L23: -0.0438 REMARK 3 S TENSOR REMARK 3 S11: 0.1681 S12: 0.1080 S13: -0.0935 REMARK 3 S21: -0.1144 S22: 0.0205 S23: 0.4860 REMARK 3 S31: 0.0318 S32: -0.4035 S33: -0.1096 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 309:495) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7736 -10.0855 18.5589 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: 0.1140 REMARK 3 T33: 0.1126 T12: 0.0263 REMARK 3 T13: -0.0146 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.7738 L22: 0.6922 REMARK 3 L33: 1.2160 L12: -0.2635 REMARK 3 L13: -0.3297 L23: -0.0151 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: 0.1117 S13: 0.0353 REMARK 3 S21: -0.1479 S22: 0.0136 S23: 0.0537 REMARK 3 S31: -0.1321 S32: -0.0819 S33: -0.0831 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 500:501) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1716 -16.1886 24.1289 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.1972 REMARK 3 T33: 0.1717 T12: -0.0096 REMARK 3 T13: -0.0149 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.5644 L22: 3.4041 REMARK 3 L33: 3.4019 L12: 0.8982 REMARK 3 L13: 1.7829 L23: 3.2703 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: -0.5906 S13: -0.5711 REMARK 3 S21: -0.2167 S22: 0.6324 S23: 0.5278 REMARK 3 S31: -0.3330 S32: 0.1051 S33: -0.4693 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT PROTOCOL USED SEPARATE REMARK 3 FRIEDEL PAIRS. TOTAL NUMBER OF REFLECTIONS 301432. REMARK 4 REMARK 4 3ZE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290054981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 159127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 53.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WPN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED USING THE REMARK 280 SITTING-DROP VAPOR DIFFUSION METHOD. 1 UL OF A RESERVOIR REMARK 280 SOLUTION CONTAINING 16% PEG 8000 (W/V) AND 0.05 M KH2PO4 PH 4.1 REMARK 280 WAS MIXED WITH AN EQUAL VOLUME OF A SOLUTION COMPOSED OF 11 MG/ REMARK 280 ML PROTEIN IN 20 MM TRIS-HCL BUFFER PH 7.6, AND EQUILIBRATED REMARK 280 AGAINST A 500 UL RESERVOIR., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.34700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.67400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.34700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.67400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2228 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2241 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 THR B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU B 253 O LYS B 259 1.41 REMARK 500 O HOH B 2095 O HOH B 2224 1.97 REMARK 500 OD1 ASP B 471 O HOH B 2034 1.98 REMARK 500 OD2 OCS B 75 SE SEC B 489 2.01 REMARK 500 O HOH B 2051 O HOH B 2052 2.07 REMARK 500 OE2 GLU A 131 O HOH A 2178 2.12 REMARK 500 O HOH A 2134 O HOH A 2135 2.14 REMARK 500 O HOH A 2098 O HOH A 2225 2.15 REMARK 500 OD2 ASP B 471 O HOH B 2399 2.17 REMARK 500 O HOH B 2031 O HOH B 2114 2.18 REMARK 500 O HOH A 2169 O HOH A 2172 2.18 REMARK 500 N LEU B 253 O LYS B 259 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 252 C - N - CA ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 46 106.42 -161.98 REMARK 500 GLU A 134 22.56 -146.14 REMARK 500 LYS A 251 -160.94 58.17 REMARK 500 ALA A 263 -107.39 -155.16 REMARK 500 OCS B 75 113.08 -161.96 REMARK 500 HIS B 185 81.18 78.73 REMARK 500 PHE B 251 88.62 65.02 REMARK 500 PHE B 251 71.55 65.02 REMARK 500 PRO B 252 173.02 -59.56 REMARK 500 TYR B 313 15.76 -141.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2062 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2117 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B2084 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B2088 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B2093 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FSX A 286 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 FSX A 286 FE3 136.8 REMARK 620 3 FSX A 286 S3 112.7 53.2 REMARK 620 4 FSX A 286 S4 167.1 30.3 60.8 REMARK 620 5 FSX A 286 O24 99.1 123.8 118.5 93.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FSX A 286 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CSS A 21 SD REMARK 620 2 FSX A 286 FE3 75.0 REMARK 620 3 FSX A 286 S2 62.3 31.0 REMARK 620 4 FSX A 286 S3 105.5 30.7 51.0 REMARK 620 5 FSX A 286 O12 43.3 31.7 30.3 62.3 REMARK 620 6 GLU A 77 OE2 95.5 153.3 122.5 145.1 133.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FSX A 286 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 121 SG REMARK 620 2 FSX A 286 O1 115.0 REMARK 620 3 FSX A 286 O24 145.7 54.9 REMARK 620 4 FSX A 286 O12 167.6 64.2 45.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FSX A 286 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 159 SG REMARK 620 2 FSX A 286 FE1 171.1 REMARK 620 3 FSX A 286 FE4 141.3 46.8 REMARK 620 4 FSX A 286 S2 114.4 66.6 52.0 REMARK 620 5 FSX A 286 S3 114.3 73.2 53.2 104.1 REMARK 620 6 FSX A 286 S4 107.7 64.5 110.9 110.5 105.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 208 ND1 REMARK 620 2 SF4 A 284 S1 101.8 REMARK 620 3 SF4 A 284 S3 167.7 65.8 REMARK 620 4 SF4 A 284 S4 118.2 106.2 66.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 211 SG REMARK 620 2 SF4 A 284 S1 113.0 REMARK 620 3 SF4 A 284 S2 107.4 106.4 REMARK 620 4 SF4 A 284 S3 119.8 103.4 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 232 SG REMARK 620 2 SF4 A 284 S1 119.4 REMARK 620 3 SF4 A 284 S2 166.1 67.0 REMARK 620 4 SF4 A 284 S4 101.8 105.8 64.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 284 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 238 SG REMARK 620 2 SF4 A 284 S2 110.9 REMARK 620 3 SF4 A 284 S3 116.8 105.8 REMARK 620 4 SF4 A 284 S4 115.4 103.4 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 247 SG REMARK 620 2 SF4 A 285 S1 114.6 REMARK 620 3 SF4 A 285 S2 167.7 66.6 REMARK 620 4 SF4 A 285 S3 104.8 105.9 63.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 259 SG REMARK 620 2 SF4 A 285 S1 110.1 REMARK 620 3 SF4 A 285 S2 115.3 105.0 REMARK 620 4 SF4 A 285 S4 175.9 65.9 66.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 265 SG REMARK 620 2 SF4 A 285 S1 113.6 REMARK 620 3 SF4 A 285 S3 176.8 66.7 REMARK 620 4 SF4 A 285 S4 118.1 103.2 64.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 285 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 268 SG REMARK 620 2 SF4 A 285 S2 114.9 REMARK 620 3 SF4 A 285 S3 108.4 103.5 REMARK 620 4 SF4 A 285 S4 121.7 103.2 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 56 OE2 REMARK 620 2 ILE B 441 O 95.7 REMARK 620 3 HIS B 495 NE2 88.1 92.1 REMARK 620 4 HOH B2053 O 89.5 174.8 87.9 REMARK 620 5 HOH B2054 O 83.0 95.5 168.9 85.3 REMARK 620 6 HOH B2286 O 171.6 90.3 97.6 84.5 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS B 75 SG REMARK 620 2 CYS B 78 SG 106.2 REMARK 620 3 PSW B 489 SD 101.0 104.1 REMARK 620 4 CYS B 492 SG 98.4 80.8 157.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FCO B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 78 SG REMARK 620 2 FCO B 500 C1 153.4 REMARK 620 3 FCO B 500 C2 92.9 87.7 REMARK 620 4 FCO B 500 C3 115.4 90.8 97.1 REMARK 620 5 CYS B 492 SG 79.9 91.1 161.4 101.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FSX A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FCO B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZE6 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE AS-ISOLATED OXIDIZED STATE AT 1.50 ANGSTROMS REMARK 900 RELATED ID: 3ZE7 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE REDUCED STATE AT 1.95 ANGSTROMS REMARK 900 RELATED ID: 3ZE8 RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE REDUCED STATE AT 1.95 ANGSTROMS REMARK 900 RELATED ID: 3ZEA RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE NIFESE HYDROGENASE FROM D. VULGARIS REMARK 900 HILDENBOROUGH IN THE REDUCED STATE AT 1.82 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 SIGNAL PEPTIDE CLEAVED OFF MATURE PROTEIN DBREF 3ZE9 A 1 283 UNP Q72AS4 Q72AS4_DESVH 35 317 DBREF 3ZE9 B 12 495 UNP Q72AS3 Q72AS3_DESVH 12 495 SEQADV 3ZE9 PSW B 489 UNP Q72AS3 SEC 489 MICROHETEROGENEITY SEQRES 1 A 283 GLY THR LEU THR GLY GLU ARG PRO PRO VAL PHE TRP LEU SEQRES 2 A 283 GLN GLY GLN GLY CYS THR GLY CSS SER VAL THR LEU LEU SEQRES 3 A 283 ASN SER VAL HIS PRO SER ILE ALA ASP VAL LEU LEU LYS SEQRES 4 A 283 VAL ILE SER LEU GLU PHE HIS PRO THR VAL MET ALA TRP SEQRES 5 A 283 GLU GLY GLU HIS ALA ILE GLU HIS MET ARG LYS VAL ALA SEQRES 6 A 283 GLU LYS PHE LYS GLY LYS PHE PHE LEU VAL ILE GLU GLY SEQRES 7 A 283 SER VAL PRO VAL GLU ALA ASP GLY LYS TYR CYS ILE ILE SEQRES 8 A 283 GLY GLU ALA ASN HIS HIS GLU ILE SER MET VAL ASP ALA SEQRES 9 A 283 LEU LYS GLU PHE GLY PRO ASN ALA ALA ALA VAL LEU ALA SEQRES 10 A 283 VAL GLY THR CYS ALA ALA TYR GLY GLY ILE PRO ALA ALA SEQRES 11 A 283 GLU GLY SER GLU THR GLY ALA THR ALA VAL SER LYS PHE SEQRES 12 A 283 LEU GLY ASP ASN GLY ILE LYS THR PRO VAL VAL ASN ILE SEQRES 13 A 283 PRO GLY CYS PRO PRO HIS PRO ASP TRP ILE VAL GLY THR SEQRES 14 A 283 VAL VAL LEU ALA LEU ASP ALA ILE LYS LYS ASN GLY LEU SEQRES 15 A 283 GLU GLY GLY LEU ALA GLU VAL VAL LYS VAL LEU ASP SER SEQRES 16 A 283 ASP GLY ARG PRO THR PRO PHE PHE GLY ARG ASN ILE HIS SEQRES 17 A 283 GLU ASN CYS PRO TYR LEU ASP LYS TYR ASP GLU GLY VAL SEQRES 18 A 283 MET SER ALA THR PHE THR ASP LYS VAL GLY CYS ARG TYR SEQRES 19 A 283 ASP LEU GLY CYS LYS GLY PRO MET THR MET ALA ASP CYS SEQRES 20 A 283 PHE GLU ARG LYS TRP ASN GLY GLY VAL ASN TRP CYS VAL SEQRES 21 A 283 GLN ASN ALA VAL CYS ILE GLY CYS VAL GLU PRO ASP PHE SEQRES 22 A 283 PRO ASP GLY LYS SER PRO PHE TYR GLN ALA SEQRES 1 B 484 GLY ALA THR GLY ARG THR THR ILE ALA ILE ASP PRO VAL SEQRES 2 B 484 THR ARG ILE GLU GLY HIS LEU LYS ALA GLU VAL VAL VAL SEQRES 3 B 484 GLU ASN GLY LYS VAL VAL ASP ALA ARG LEU SER GLY GLY SEQRES 4 B 484 MET TYR ARG GLY PHE GLU THR ILE LEU ARG GLY ARG ASP SEQRES 5 B 484 PRO ARG ASP ALA SER GLN ILE VAL GLN ARG ILE OCS GLY SEQRES 6 B 484 VAL CYS PRO THR ALA HIS SER THR ALA SER VAL LEU ALA SEQRES 7 B 484 LEU ASP GLU ALA PHE GLY ALA LYS VAL PRO ASN ASN GLY SEQRES 8 B 484 ARG ILE THR ARG ASN LEU ILE PHE GLY ALA ASN TYR LEU SEQRES 9 B 484 GLN SER HIS ILE LEU HIS PHE TYR HIS LEU SER ALA GLN SEQRES 10 B 484 ASP PHE VAL GLN GLY PRO ASP THR ALA PRO PHE VAL PRO SEQRES 11 B 484 ARG PHE PRO LYS SER ASP LEU ARG LEU SER LYS GLU LEU SEQRES 12 B 484 ASN LYS ALA GLY VAL ASP GLN TYR ILE GLU ALA LEU GLU SEQRES 13 B 484 VAL ARG ARG ILE CYS HIS GLU MET VAL ALA LEU PHE GLY SEQRES 14 B 484 GLY ARG MET PRO HIS VAL GLN GLY GLN VAL VAL GLY GLY SEQRES 15 B 484 ALA THR GLU ILE PRO THR LYS GLU LYS LEU VAL GLU TYR SEQRES 16 B 484 ALA ALA ARG PHE LYS LYS VAL ARG ASP PHE VAL GLU GLN SEQRES 17 B 484 LYS TYR VAL PRO VAL VAL TYR THR ILE GLY SER LYS TYR SEQRES 18 B 484 LYS ASP MET PHE LYS VAL GLY GLN GLY PHE LYS ALA ALA SEQRES 19 B 484 LEU CYS VAL GLY ALA PHE PRO LEU ASP ASN SER GLY LYS SEQRES 20 B 484 LYS HIS LEU PHE MET PRO GLY VAL TYR ALA LYS GLY LYS SEQRES 21 B 484 ASP MET PRO PHE ASP PRO SER LYS ILE LYS GLU TYR VAL SEQRES 22 B 484 LYS TYR SER TRP PHE ALA GLU GLU THR THR GLY LEU ASN SEQRES 23 B 484 TYR LYS GLU GLY LYS THR ILE PRO ALA PRO ASP LYS ALA SEQRES 24 B 484 GLY ALA TYR SER PHE VAL LYS ALA PRO ARG TYR ASP GLY SEQRES 25 B 484 LEU SER LEU GLU VAL GLY PRO LEU ALA ARG MET TRP VAL SEQRES 26 B 484 ASN ASN PRO GLU LEU SER PRO VAL GLY LYS LYS LEU LEU SEQRES 27 B 484 LYS ASP LEU PHE GLY ILE SER ALA LYS LYS PHE ARG ASP SEQRES 28 B 484 LEU GLY GLU GLU ALA ALA PHE SER LEU MET GLY ARG HIS SEQRES 29 B 484 VAL ALA ARG ALA GLU GLU THR TYR TYR MET LEU GLY ALA SEQRES 30 B 484 ILE GLU GLY TRP LEU LYS GLU ILE LYS ALA GLY GLU ASP SEQRES 31 B 484 THR VAL VAL MET PRO ALA VAL PRO ALA SER ALA GLU GLY SEQRES 32 B 484 THR GLY PHE THR GLU ALA PRO ARG GLY SER LEU LEU HIS SEQRES 33 B 484 TYR VAL LYS VAL LYS ASP SER LYS ILE ASP ASN TYR GLN SEQRES 34 B 484 ILE VAL SER ALA SER LEU TRP ASN CYS ASN PRO ARG ASP SEQRES 35 B 484 ASP MET GLY GLN ARG GLY ALA VAL GLU GLU ALA LEU ILE SEQRES 36 B 484 GLY ILE PRO VAL ASP ASP ILE GLN ASN PRO VAL ASN VAL SEQRES 37 B 484 ALA ARG LEU ILE ARG ALA PHE ASP PRO PSW LEU GLY CYS SEQRES 38 B 484 ALA VAL HIS MODRES 3ZE9 CSS A 21 CYS S-MERCAPTOCYSTEINE MODRES 3ZE9 OCS B 75 CYS CYSTEINESULFONIC ACID MODRES 3ZE9 PSW B 489 SEC 3-(SULFANYLSELANYL)-L-ALANINE HET CSS A 21 10 HET OCS B 75 11 HET PSW B 489 20 HET SF4 A 284 8 HET SF4 A 285 8 HET FSX A 286 10 HET FCO B 500 7 HET NI B 501 1 HET FE2 B 502 1 HET CL B 504 1 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM PSW 3-(SULFANYLSELANYL)-L-ALANINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FSX BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)- HETNAM 2 FSX TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) HETNAM FCO CARBONMONOXIDE-(DICYANO) IRON HETNAM NI NICKEL (II) ION HETNAM FE2 FE (II) ION HETNAM CL CHLORIDE ION HETSYN FSX FE4-S3-O3 CLUSTER FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 OCS C3 H7 N O5 S FORMUL 2 PSW C3 H7 N O2 S SE FORMUL 3 SF4 2(FE4 S4) FORMUL 5 FSX FE4 O3 S3 FORMUL 6 FCO C3 FE N2 O FORMUL 7 NI NI 2+ FORMUL 8 FE2 FE 2+ FORMUL 9 CL CL 1- FORMUL 10 HOH *741(H2 O) HELIX 1 1 THR A 19 ASN A 27 1 9 HELIX 2 2 SER A 32 VAL A 40 1 9 HELIX 3 3 GLU A 53 PHE A 68 1 16 HELIX 4 4 GLU A 83 LYS A 87 5 5 HELIX 5 5 MET A 101 GLY A 109 1 9 HELIX 6 6 GLY A 119 GLY A 125 1 7 HELIX 7 7 GLY A 126 ALA A 130 5 5 HELIX 8 8 ALA A 139 ASN A 147 1 9 HELIX 9 9 HIS A 162 GLY A 181 1 20 HELIX 10 10 GLY A 181 LYS A 191 1 11 HELIX 11 11 PRO A 199 GLY A 204 1 6 HELIX 12 12 ILE A 207 CYS A 211 5 5 HELIX 13 13 TYR A 213 GLY A 220 1 8 HELIX 14 14 ARG A 233 GLY A 237 5 5 HELIX 15 15 LYS A 239 THR A 243 5 5 HELIX 16 16 ASP A 246 LYS A 251 1 6 HELIX 17 17 TRP A 258 ALA A 263 1 6 HELIX 18 18 PRO A 274 SER A 278 5 5 HELIX 19 19 GLY B 54 LEU B 59 1 6 HELIX 20 20 ASP B 63 ARG B 65 5 3 HELIX 21 21 ASP B 66 VAL B 71 1 6 HELIX 22 22 GLN B 72 OCS B 75 5 4 HELIX 23 23 CYS B 78 GLY B 95 1 18 HELIX 24 24 PRO B 99 LEU B 125 1 27 HELIX 25 25 SER B 126 PHE B 130 5 5 HELIX 26 26 SER B 151 GLY B 181 1 31 HELIX 27 27 THR B 199 LYS B 220 1 22 HELIX 28 28 LYS B 220 SER B 230 1 11 HELIX 29 29 LYS B 231 LYS B 237 5 7 HELIX 30 30 ASP B 276 SER B 278 5 3 HELIX 31 31 ALA B 290 THR B 294 5 5 HELIX 32 32 ASN B 297 GLY B 301 5 5 HELIX 33 33 GLY B 329 ASN B 338 1 10 HELIX 34 34 SER B 342 GLY B 354 1 13 HELIX 35 35 PHE B 360 LEU B 363 5 4 HELIX 36 36 GLY B 364 PHE B 369 1 6 HELIX 37 37 SER B 370 ILE B 396 1 27 HELIX 38 38 SER B 443 ASN B 450 1 8 HELIX 39 39 GLY B 459 LEU B 465 1 7 HELIX 40 40 VAL B 477 PHE B 486 1 10 HELIX 41 41 PSW B 489 HIS B 495 1 7 SHEET 1 AA 5 SER A 42 PHE A 45 0 SHEET 2 AA 5 PRO A 9 GLN A 14 1 O VAL A 10 N GLU A 44 SHEET 3 AA 5 PHE A 72 GLU A 77 1 O PHE A 73 N PHE A 11 SHEET 4 AA 5 ALA A 112 VAL A 118 1 N ALA A 113 O PHE A 72 SHEET 5 AA 5 VAL A 153 ILE A 156 1 O VAL A 154 N ALA A 117 SHEET 1 AB 2 VAL A 80 PRO A 81 0 SHEET 2 AB 2 ALA A 137 THR A 138 -1 O THR A 138 N VAL A 80 SHEET 1 AC 2 ILE A 90 ALA A 94 0 SHEET 2 AC 2 HIS A 97 SER A 100 -1 O HIS A 97 N ALA A 94 SHEET 1 BA 3 ARG B 16 ILE B 21 0 SHEET 2 BA 3 LEU B 31 GLU B 38 -1 O ALA B 33 N ILE B 21 SHEET 3 BA 3 LYS B 41 GLY B 49 -1 O LYS B 41 N GLU B 38 SHEET 1 BB 2 GLN B 189 VAL B 190 0 SHEET 2 BB 2 GLY B 193 ALA B 194 -1 O GLY B 193 N VAL B 190 SHEET 1 BC 3 ALA B 245 CYS B 247 0 SHEET 2 BC 3 GLY B 265 ALA B 268 -1 O GLY B 265 N CYS B 247 SHEET 3 BC 3 LYS B 271 MET B 273 -1 O LYS B 271 N ALA B 268 SHEET 1 BD 2 ALA B 250 PRO B 252 0 SHEET 2 BD 2 HIS B 260 PHE B 262 -1 N LEU B 261 O PHE B 251 SHEET 1 BE 2 ILE B 280 TYR B 283 0 SHEET 2 BE 2 ALA B 318 TYR B 321 -1 O ALA B 318 N TYR B 283 SHEET 1 BF 3 ALA B 412 ALA B 420 0 SHEET 2 BF 3 GLY B 423 LYS B 432 -1 O GLY B 423 N ALA B 420 SHEET 3 BF 3 LYS B 435 VAL B 442 -1 O LYS B 435 N LYS B 432 SSBOND 1 CYS B 78 CYS B 492 1555 1555 2.90 LINK C GLY A 20 N CSS A 21 1555 1555 1.34 LINK C CSS A 21 N SER A 22 1555 1555 1.33 LINK SD CSS A 21 O12 FSX A 286 1555 1555 1.66 LINK C ILE B 74 N OCS B 75 1555 1555 1.32 LINK C OCS B 75 N GLY B 76 1555 1555 1.32 LINK SG OCS B 75 SE CSEC B 489 1555 1555 2.31 LINK C PRO B 488 N APSW B 489 1555 1555 1.33 LINK C PRO B 488 N BPSW B 489 1555 1555 1.33 LINK C APSW B 489 N LEU B 490 1555 1555 1.32 LINK C BPSW B 489 N LEU B 490 1555 1555 1.33 LINK SG CYS A 18 FE4 FSX A 286 1555 1555 2.26 LINK SD CSS A 21 FE1 FSX A 286 1555 1555 2.41 LINK OE2 GLU A 77 FE1 FSX A 286 1555 1555 2.07 LINK SG CYS A 121 FE2 FSX A 286 1555 1555 2.27 LINK SG CYS A 159 FE3 FSX A 286 1555 1555 2.32 LINK ND1 HIS A 208 FE2 SF4 A 284 1555 1555 2.07 LINK SG CYS A 211 FE4 SF4 A 284 1555 1555 2.29 LINK SG CYS A 232 FE3 SF4 A 284 1555 1555 2.30 LINK SG CYS A 238 FE1 SF4 A 284 1555 1555 2.33 LINK SG CYS A 247 FE4 SF4 A 285 1555 1555 2.29 LINK SG CYS A 259 FE3 SF4 A 285 1555 1555 2.28 LINK SG CYS A 265 FE2 SF4 A 285 1555 1555 2.30 LINK SG CYS A 268 FE1 SF4 A 285 1555 1555 2.30 LINK OE2 GLU B 56 FE FE2 B 502 1555 1555 2.29 LINK SG OCS B 75 NI NI B 501 1555 1555 2.24 LINK SG CYS B 78 FE FCO B 500 1555 1555 2.25 LINK SG CYS B 78 NI NI B 501 1555 1555 2.26 LINK O ILE B 441 FE FE2 B 502 1555 1555 2.22 LINK SD APSW B 489 NI NI B 501 1555 1555 2.18 LINK SG CYS B 492 FE FCO B 500 1555 1555 2.28 LINK SG CYS B 492 NI NI B 501 1555 1555 2.22 LINK NE2 HIS B 495 FE FE2 B 502 1555 1555 2.19 LINK FE FE2 B 502 O HOH B2053 1555 1555 2.22 LINK FE FE2 B 502 O HOH B2054 1555 1555 2.11 LINK FE FE2 B 502 O HOH B2286 1555 1555 2.15 CISPEP 1 HIS A 30 PRO A 31 0 2.69 CISPEP 2 CYS A 159 PRO A 160 0 -0.62 CISPEP 3 PHE A 273 PRO A 274 0 6.76 CISPEP 4 SER A 278 PRO A 279 0 -4.61 CISPEP 5 ASP B 22 PRO B 23 0 4.09 CISPEP 6 ALA B 137 PRO B 138 0 6.14 CISPEP 7 VAL B 140 PRO B 141 0 -3.71 CISPEP 8 MET B 183 PRO B 184 0 -1.58 SITE 1 AC1 8 HIS A 208 CYS A 211 TYR A 213 LEU A 214 SITE 2 AC1 8 CYS A 232 ARG A 233 CYS A 238 VAL A 260 SITE 1 AC2 9 THR A 243 CYS A 247 TRP A 252 CYS A 259 SITE 2 AC2 9 CYS A 265 ILE A 266 CYS A 268 ARG B 182 SITE 3 AC2 9 GLN B 187 SITE 1 AC3 14 GLY A 17 CYS A 18 THR A 19 GLY A 20 SITE 2 AC3 14 CSS A 21 GLU A 77 GLY A 78 THR A 120 SITE 3 AC3 14 CYS A 121 GLY A 158 CYS A 159 PRO A 160 SITE 4 AC3 14 HOH A2112 HIS B 185 SITE 1 AC4 10 CYS B 78 ALA B 420 PRO B 421 ARG B 422 SITE 2 AC4 10 LEU B 425 ALA B 444 SER B 445 PSW B 489 SITE 3 AC4 10 CYS B 492 NI B 501 SITE 1 AC5 5 OCS B 75 CYS B 78 PSW B 489 CYS B 492 SITE 2 AC5 5 FCO B 500 SITE 1 AC6 6 GLU B 56 ILE B 441 HIS B 495 HOH B2053 SITE 2 AC6 6 HOH B2054 HOH B2286 SITE 1 AC7 6 CYS B 78 THR B 80 ALA B 81 PHE B 110 SITE 2 AC7 6 ASN B 113 PRO B 421 CRYST1 106.694 63.348 109.740 90.00 105.42 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009373 0.000000 0.002585 0.00000 SCALE2 0.000000 0.015786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009453 0.00000