data_3ZEE # _entry.id 3ZEE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZEE pdb_00003zee 10.2210/pdb3zee/pdb PDBE EBI-54961 ? ? WWPDB D_1290054961 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-16 2 'Structure model' 2 0 2017-08-30 3 'Structure model' 2 1 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' em_software 3 2 'Structure model' pdbx_unobs_or_zero_occ_atoms 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 7 3 'Structure model' em_3d_fitting_list 8 3 'Structure model' pdbx_initial_refinement_model 9 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_atom_id' 2 2 'Structure model' '_atom_site.label_atom_id' 3 2 'Structure model' '_em_software.fitting_id' 4 2 'Structure model' '_em_software.image_processing_id' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_em_3d_fitting_list.accession_code' 8 3 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 9 3 'Structure model' '_em_3d_fitting_list.source_name' 10 3 'Structure model' '_em_3d_fitting_list.type' 11 3 'Structure model' '_pdbx_struct_oper_list.name' 12 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 13 3 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZEE _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-12-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-2237 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details 'ELECTRON CYRO-MICROSCOPY HELICAL RECONSTRUCTION OF PAR-3 N-TERMINAL DOMAIN' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, Y.' 1 'Wang, W.' 2 'Chen, J.' 3 'Zhang, K.' 4 'Gao, F.' 5 'Gong, W.' 6 'Zhang, M.' 7 'Sun, F.' 8 'Feng, W.' 9 # _citation.id primary _citation.title 'Structural Insights Into the Intrinsic Self-Assembly of Par-3 N-Terminal Domain.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 997 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23643951 _citation.pdbx_database_id_DOI 10.1016/J.STR.2013.04.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.' 1 ? primary 'Wang, W.' 2 ? primary 'Chen, J.' 3 ? primary 'Zhang, K.' 4 ? primary 'Gao, F.' 5 ? primary 'Gao, B.' 6 ? primary 'Zhang, S.' 7 ? primary 'Dong, M.' 8 ? primary 'Besenbacher, F.' 9 ? primary 'Gong, W.' 10 ? primary 'Zhang, M.' 11 ? primary 'Sun, F.' 12 ? primary 'Feng, W.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'PARTITIONING DEFECTIVE 3 HOMOLOG' _entity.formula_weight 9552.906 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'N-TERMINAL DUF3534 DOMAIN, RESIDUES 2-82' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PAR-3, PARD-3, ATYPICAL PKC ISOTYPE-SPECIFIC-INTERACTING PROTEIN, ASIP, ATYPICAL PKC-SPECIFIC-BINDING PROTEIN, ASBP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SEFKVTVCFGRTRVVVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDVADDKDRLVAV FDEQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SEFKVTVCFGRTRVVVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDVADDKDRLVAV FDEQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 PHE n 1 4 LYS n 1 5 VAL n 1 6 THR n 1 7 VAL n 1 8 CYS n 1 9 PHE n 1 10 GLY n 1 11 ARG n 1 12 THR n 1 13 ARG n 1 14 VAL n 1 15 VAL n 1 16 VAL n 1 17 PRO n 1 18 CYS n 1 19 GLY n 1 20 ASP n 1 21 GLY n 1 22 ARG n 1 23 MET n 1 24 LYS n 1 25 VAL n 1 26 PHE n 1 27 SER n 1 28 LEU n 1 29 ILE n 1 30 GLN n 1 31 GLN n 1 32 ALA n 1 33 VAL n 1 34 THR n 1 35 ARG n 1 36 TYR n 1 37 ARG n 1 38 LYS n 1 39 ALA n 1 40 VAL n 1 41 ALA n 1 42 LYS n 1 43 ASP n 1 44 PRO n 1 45 ASN n 1 46 TYR n 1 47 TRP n 1 48 ILE n 1 49 GLN n 1 50 VAL n 1 51 HIS n 1 52 ARG n 1 53 LEU n 1 54 GLU n 1 55 HIS n 1 56 GLY n 1 57 ASP n 1 58 GLY n 1 59 GLY n 1 60 ILE n 1 61 LEU n 1 62 ASP n 1 63 LEU n 1 64 ASP n 1 65 ASP n 1 66 ILE n 1 67 LEU n 1 68 CYS n 1 69 ASP n 1 70 VAL n 1 71 ALA n 1 72 ASP n 1 73 ASP n 1 74 LYS n 1 75 ASP n 1 76 ARG n 1 77 LEU n 1 78 VAL n 1 79 ALA n 1 80 VAL n 1 81 PHE n 1 82 ASP n 1 83 GLU n 1 84 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'NORWAY RAT' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RATTUS NORVEGICUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant CODONPLUS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET32A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -1 -1 SER SER A . n A 1 2 GLU 2 0 0 GLU GLU A . n A 1 3 PHE 3 1 1 PHE PHE A . n A 1 4 LYS 4 2 2 LYS LYS A . n A 1 5 VAL 5 3 3 VAL VAL A . n A 1 6 THR 6 4 4 THR THR A . n A 1 7 VAL 7 5 5 VAL VAL A . n A 1 8 CYS 8 6 6 CYS CYS A . n A 1 9 PHE 9 7 7 PHE PHE A . n A 1 10 GLY 10 8 8 GLY GLY A . n A 1 11 ARG 11 9 9 ARG ARG A . n A 1 12 THR 12 10 10 THR THR A . n A 1 13 ARG 13 11 11 ARG ARG A . n A 1 14 VAL 14 12 12 VAL VAL A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 VAL 16 14 14 VAL VAL A . n A 1 17 PRO 17 15 15 PRO PRO A . n A 1 18 CYS 18 16 16 CYS CYS A . n A 1 19 GLY 19 17 17 GLY GLY A . n A 1 20 ASP 20 18 18 ASP ASP A . n A 1 21 GLY 21 19 19 GLY GLY A . n A 1 22 ARG 22 20 20 ARG ARG A . n A 1 23 MET 23 21 21 MET MET A . n A 1 24 LYS 24 22 22 LYS LYS A . n A 1 25 VAL 25 23 23 VAL VAL A . n A 1 26 PHE 26 24 24 PHE PHE A . n A 1 27 SER 27 25 25 SER SER A . n A 1 28 LEU 28 26 26 LEU LEU A . n A 1 29 ILE 29 27 27 ILE ILE A . n A 1 30 GLN 30 28 28 GLN GLN A . n A 1 31 GLN 31 29 29 GLN GLN A . n A 1 32 ALA 32 30 30 ALA ALA A . n A 1 33 VAL 33 31 31 VAL VAL A . n A 1 34 THR 34 32 32 THR THR A . n A 1 35 ARG 35 33 33 ARG ARG A . n A 1 36 TYR 36 34 34 TYR TYR A . n A 1 37 ARG 37 35 35 ARG ARG A . n A 1 38 LYS 38 36 36 LYS LYS A . n A 1 39 ALA 39 37 37 ALA ALA A . n A 1 40 VAL 40 38 38 VAL VAL A . n A 1 41 ALA 41 39 39 ALA ALA A . n A 1 42 LYS 42 40 40 LYS LYS A . n A 1 43 ASP 43 41 41 ASP ASP A . n A 1 44 PRO 44 42 42 PRO PRO A . n A 1 45 ASN 45 43 43 ASN ASN A . n A 1 46 TYR 46 44 44 TYR TYR A . n A 1 47 TRP 47 45 45 TRP TRP A . n A 1 48 ILE 48 46 46 ILE ILE A . n A 1 49 GLN 49 47 47 GLN GLN A . n A 1 50 VAL 50 48 48 VAL VAL A . n A 1 51 HIS 51 49 49 HIS HIS A . n A 1 52 ARG 52 50 50 ARG ARG A . n A 1 53 LEU 53 51 51 LEU LEU A . n A 1 54 GLU 54 52 52 GLU GLU A . n A 1 55 HIS 55 53 53 HIS HIS A . n A 1 56 GLY 56 54 54 GLY GLY A . n A 1 57 ASP 57 55 55 ASP ASP A . n A 1 58 GLY 58 56 56 GLY GLY A . n A 1 59 GLY 59 57 57 GLY GLY A . n A 1 60 ILE 60 58 58 ILE ILE A . n A 1 61 LEU 61 59 59 LEU LEU A . n A 1 62 ASP 62 60 60 ASP ASP A . n A 1 63 LEU 63 61 61 LEU LEU A . n A 1 64 ASP 64 62 62 ASP ASP A . n A 1 65 ASP 65 63 63 ASP ASP A . n A 1 66 ILE 66 64 64 ILE ILE A . n A 1 67 LEU 67 65 65 LEU LEU A . n A 1 68 CYS 68 66 66 CYS CYS A . n A 1 69 ASP 69 67 67 ASP ASP A . n A 1 70 VAL 70 68 68 VAL VAL A . n A 1 71 ALA 71 69 69 ALA ALA A . n A 1 72 ASP 72 70 70 ASP ASP A . n A 1 73 ASP 73 71 71 ASP ASP A . n A 1 74 LYS 74 72 72 LYS LYS A . n A 1 75 ASP 75 73 73 ASP ASP A . n A 1 76 ARG 76 74 74 ARG ARG A . n A 1 77 LEU 77 75 75 LEU LEU A . n A 1 78 VAL 78 76 76 VAL VAL A . n A 1 79 ALA 79 77 77 ALA ALA A . n A 1 80 VAL 80 78 78 VAL VAL A . n A 1 81 PHE 81 79 79 PHE PHE A . n A 1 82 ASP 82 80 80 ASP ASP A . n A 1 83 GLU 83 81 81 GLU GLU A . n A 1 84 GLN 84 82 82 GLN GLN A . n # _cell.entry_id 3ZEE _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZEE _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 3ZEE _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 3ZEE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 6.10 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 670 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 670 _refine_hist.d_res_high 6.10 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3ZEE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3ZEE _struct.title 'Electron cyro-microscopy helical reconstruction of Par-3 N terminal domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZEE _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'CELL CYCLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PARD3_RAT _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9Z340 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZEE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 84 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Z340 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 82 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 82 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZEE SER A 1 ? UNP Q9Z340 ? ? 'expression tag' -1 1 1 3ZEE GLU A 2 ? UNP Q9Z340 ? ? 'expression tag' 0 2 1 3ZEE PHE A 3 ? UNP Q9Z340 ? ? 'expression tag' 1 3 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 49 2 'helical asymmetric unit' ? monomeric 1 3 'helical asymmetric unit, std helical frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-49)' A 2 25 A 3 H A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? 0.88327513 0.46885503 0.00000000 0.00000 -0.46885503 0.88327513 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -84.76800 2 'helical symmetry operation' ? ? 0.31241782 0.94994479 0.00000000 0.00000 -0.94994479 0.31241782 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -81.23600 3 'helical symmetry operation' ? ? -0.43255789 0.90160616 0.00000000 0.00000 -0.90160616 -0.43255789 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -77.70400 4 'helical symmetry operation' ? ? -0.93645808 0.35077950 0.00000000 0.00000 -0.35077950 -0.93645808 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -74.17200 5 'helical symmetry operation' ? ? -0.91844638 -0.39554550 0.00000000 0.00000 0.39554550 -0.91844638 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -70.64000 6 'helical symmetry operation' ? ? -0.38856116 -0.92142294 0.00000000 0.00000 0.92142294 -0.38856116 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -67.10800 7 'helical symmetry operation' ? ? 0.35787908 -0.93376794 0.00000000 0.00000 0.93376794 0.35787908 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -63.57600 8 'helical symmetry operation' ? ? 0.90486421 -0.42570033 0.00000000 0.00000 0.42570033 0.90486421 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -60.04400 9 'helical symmetry operation' ? ? 0.94754550 0.31962090 0.00000000 0.00000 -0.31962090 0.94754550 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -56.51200 10 'helical symmetry operation' ? ? 0.46213560 0.88680927 0.00000000 0.00000 -0.88680927 0.46213560 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -52.98000 11 'helical symmetry operation' ? ? -0.28083422 0.95975629 0.00000000 0.00000 -0.95975629 -0.28083422 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -49.44800 12 'helical symmetry operation' ? ? -0.86728799 0.49780673 0.00000000 0.00000 -0.49780673 -0.86728799 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -45.91600 13 'helical symmetry operation' ? ? -0.97038011 -0.24158318 0.00000000 0.00000 0.24158318 -0.97038011 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -42.38400 14 'helical symmetry operation' ? ? -0.53265472 -0.84633264 0.00000000 0.00000 0.84633264 -0.53265472 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -38.85200 15 'helical symmetry operation' ? ? 0.20193269 -0.97939940 0.00000000 0.00000 0.97939940 0.20193269 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -35.32000 16 'helical symmetry operation' ? ? 0.82397788 -0.56662197 0.00000000 0.00000 0.56662197 0.82397788 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -31.78800 17 'helical symmetry operation' ? ? 0.98679925 0.16194829 0.00000000 0.00000 -0.16194829 0.98679925 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.25600 18 'helical symmetry operation' ? ? 0.59965231 0.80026065 0.00000000 0.00000 -0.80026065 0.59965231 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -24.72400 19 'helical symmetry operation' ? ? -0.12169611 0.99256741 0.00000000 0.00000 -0.99256741 -0.12169611 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.19200 20 'helical symmetry operation' ? ? -0.77522019 0.63169111 0.00000000 0.00000 -0.63169111 -0.77522019 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -17.66000 21 'helical symmetry operation' ? ? -0.99669435 -0.08124270 0.00000000 0.00000 0.08124270 -0.99669435 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.12800 22 'helical symmetry operation' ? ? -0.66268540 -0.74889789 0.00000000 0.00000 0.74889789 -0.66268540 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -10.59600 23 'helical symmetry operation' ? ? 0.04065496 -0.99917325 0.00000000 0.00000 0.99917325 0.04065496 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.06400 24 'helical symmetry operation' ? ? 0.72133729 -0.69258394 0.00000000 0.00000 0.69258394 0.72133729 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -3.53200 25 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 26 'helical symmetry operation' ? ? 0.72133729 0.69258394 0.00000000 0.00000 -0.69258394 0.72133729 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 3.53200 27 'helical symmetry operation' ? ? 0.04065496 0.99917325 0.00000000 0.00000 -0.99917325 0.04065496 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.06400 28 'helical symmetry operation' ? ? -0.66268540 0.74889789 0.00000000 0.00000 -0.74889789 -0.66268540 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 10.59600 29 'helical symmetry operation' ? ? -0.99669435 0.08124270 0.00000000 0.00000 -0.08124270 -0.99669435 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.12800 30 'helical symmetry operation' ? ? -0.77522019 -0.63169111 0.00000000 0.00000 0.63169111 -0.77522019 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 17.66000 31 'helical symmetry operation' ? ? -0.12169611 -0.99256741 0.00000000 0.00000 0.99256741 -0.12169611 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.19200 32 'helical symmetry operation' ? ? 0.59965231 -0.80026065 0.00000000 0.00000 0.80026065 0.59965231 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 24.72400 33 'helical symmetry operation' ? ? 0.98679925 -0.16194829 0.00000000 0.00000 0.16194829 0.98679925 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.25600 34 'helical symmetry operation' ? ? 0.82397788 0.56662197 0.00000000 0.00000 -0.56662197 0.82397788 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 31.78800 35 'helical symmetry operation' ? ? 0.20193269 0.97939940 0.00000000 0.00000 -0.97939940 0.20193269 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 35.32000 36 'helical symmetry operation' ? ? -0.53265472 0.84633264 0.00000000 0.00000 -0.84633264 -0.53265472 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 38.85200 37 'helical symmetry operation' ? ? -0.97038011 0.24158318 0.00000000 0.00000 -0.24158318 -0.97038011 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 42.38400 38 'helical symmetry operation' ? ? -0.86728799 -0.49780673 0.00000000 0.00000 0.49780673 -0.86728799 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 45.91600 39 'helical symmetry operation' ? ? -0.28083422 -0.95975629 0.00000000 0.00000 0.95975629 -0.28083422 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 49.44800 40 'helical symmetry operation' ? ? 0.46213560 -0.88680927 0.00000000 0.00000 0.88680927 0.46213560 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 52.98000 41 'helical symmetry operation' ? ? 0.94754550 -0.31962090 0.00000000 0.00000 0.31962090 0.94754550 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 56.51200 42 'helical symmetry operation' ? ? 0.90486421 0.42570033 0.00000000 0.00000 -0.42570033 0.90486421 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 60.04400 43 'helical symmetry operation' ? ? 0.35787908 0.93376794 0.00000000 0.00000 -0.93376794 0.35787908 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 63.57600 44 'helical symmetry operation' ? ? -0.38856116 0.92142294 0.00000000 0.00000 -0.92142294 -0.38856116 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 67.10800 45 'helical symmetry operation' ? ? -0.91844638 0.39554550 0.00000000 0.00000 -0.39554550 -0.91844638 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 70.64000 46 'helical symmetry operation' ? ? -0.93645808 -0.35077950 0.00000000 0.00000 0.35077950 -0.93645808 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 74.17200 47 'helical symmetry operation' ? ? -0.43255789 -0.90160616 0.00000000 0.00000 0.90160616 -0.43255789 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 77.70400 48 'helical symmetry operation' ? ? 0.31241782 -0.94994479 0.00000000 0.00000 0.94994479 0.31241782 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 81.23600 49 'helical symmetry operation' ? ? 0.88327513 -0.46885503 0.00000000 0.00000 0.46885503 0.88327513 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 84.76800 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 25 ? ALA A 41 ? VAL A 23 ALA A 39 1 ? 17 HELX_P HELX_P2 2 ILE A 66 ? ALA A 71 ? ILE A 64 ALA A 69 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 4 ? VAL A 7 ? LYS A 2 VAL A 5 AA 2 VAL A 14 ? PRO A 17 ? VAL A 12 PRO A 15 AB 1 GLN A 49 ? GLU A 54 ? GLN A 47 GLU A 52 AB 2 VAL A 78 ? ASP A 82 ? VAL A 76 ASP A 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 7 ? N VAL A 5 O VAL A 14 ? O VAL A 12 AB 1 2 N GLU A 54 ? N GLU A 52 O VAL A 78 ? O VAL A 76 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA A LEU 59 ? ? C A LEU 59 ? ? 1.365 1.525 -0.160 0.026 N 2 1 CD A ARG 74 ? ? NE A ARG 74 ? ? 1.565 1.460 0.105 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 5 ? ? CB A VAL 5 ? ? CG2 A VAL 5 ? ? 98.45 110.90 -12.45 1.50 N 2 1 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 116.84 120.30 -3.46 0.50 N 3 1 CA A VAL 13 ? ? CB A VAL 13 ? ? CG1 A VAL 13 ? ? 120.57 110.90 9.67 1.50 N 4 1 CB A PHE 24 ? ? CG A PHE 24 ? ? CD1 A PHE 24 ? ? 115.09 120.80 -5.71 0.70 N 5 1 NE A ARG 33 ? ? CZ A ARG 33 ? ? NH1 A ARG 33 ? ? 123.47 120.30 3.17 0.50 N 6 1 CB A TYR 34 ? ? CG A TYR 34 ? ? CD2 A TYR 34 ? ? 112.64 121.00 -8.36 0.60 N 7 1 CB A TYR 34 ? ? CG A TYR 34 ? ? CD1 A TYR 34 ? ? 126.10 121.00 5.10 0.60 N 8 1 NE A ARG 35 ? ? CZ A ARG 35 ? ? NH2 A ARG 35 ? ? 116.80 120.30 -3.50 0.50 N 9 1 CG A TYR 44 ? ? CD2 A TYR 44 ? ? CE2 A TYR 44 ? ? 115.94 121.30 -5.36 0.80 N 10 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH2 A ARG 50 ? ? 123.50 120.30 3.20 0.50 N 11 1 CB A ASP 55 ? ? CG A ASP 55 ? ? OD1 A ASP 55 ? ? 124.76 118.30 6.46 0.90 N 12 1 C A ALA 77 ? ? N A VAL 78 ? ? CA A VAL 78 ? ? 138.48 121.70 16.78 2.50 Y 13 1 CB A ASP 80 ? ? CA A ASP 80 ? ? C A ASP 80 ? ? 122.54 110.40 12.14 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 21 ? ? 176.89 156.27 2 1 VAL A 38 ? ? -148.23 -3.24 3 1 LYS A 40 ? ? -89.41 -112.69 4 1 ASN A 43 ? ? 179.22 116.90 5 1 TYR A 44 ? ? 175.14 -164.72 6 1 ILE A 46 ? ? -145.30 49.43 7 1 ASP A 62 ? ? -146.38 -37.49 8 1 VAL A 68 ? ? -100.87 -76.01 9 1 ASP A 70 ? ? -94.38 -157.07 10 1 GLU A 81 ? ? -161.67 7.25 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PHE _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 79 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 80 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.42 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 20 ? ? 0.133 'SIDE CHAIN' 2 1 PHE A 24 ? ? 0.090 'SIDE CHAIN' 3 1 TYR A 34 ? ? 0.104 'SIDE CHAIN' 4 1 TYR A 44 ? ? 0.160 'SIDE CHAIN' 5 1 ARG A 50 ? ? 0.080 'SIDE CHAIN' 6 1 ARG A 74 ? ? 0.082 'SIDE CHAIN' # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 PHE A 1 ? ? -10.75 2 1 PHE A 79 ? ? -10.34 # _pdbx_helical_symmetry.entry_id 3ZEE _pdbx_helical_symmetry.number_of_operations 49 _pdbx_helical_symmetry.rotation_per_n_subunits -43.835000 _pdbx_helical_symmetry.rise_per_n_subunits 3.532000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3ZEE _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'ENERGY FUNCTION IN NAMD2' _em_3d_fitting.details 'METHOD--CROSS CORRELATION REFINEMENT PROTOCOL--X-RAY' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 4I6P _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 4I6P # _em_3d_reconstruction.entry_id 3ZEE _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.refinement_type 'HALF-MAPS REFINED INDEPENDENTLY' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.num_particles 84000 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'THE INITIAL MODEL WAS OBTAINED USING IHRSR. THEN THE FINAL RECONSTRUCTION WERE OBTAINED BY PROJECTION MATCHING IN EMAN.' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 0.933 _em_3d_reconstruction.resolution 6.1 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;THE INITIAL MODEL WAS OBTAINED USING IHRSR. THEN THE FINAL RECONSTRUCTION WERE OBTAINED BY PROJECTION MATCHING IN EMAN. THE RESOLUTION CRITERIA USED WAS GOLDEN CRITERIA FSC 0.5. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2237. (DEPOSITION ID: 11249). ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 MM TRIS, 100 MM NACL, 1 MM DTT AND 1 MM EDTA' _em_buffer.pH 8 _em_buffer.details '50 MM TRIS, 100 MM NACL, 1 MM DTT AND 1 MM EDTA' # _em_entity_assembly.id 1 _em_entity_assembly.name 'PAR-3 N-TERMINAL DUF3534 DOMAIN' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'SUPPORTING FILM IS GIG HOLELY GRID.' _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 3ZEE _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 6460 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 3ZEE _em_imaging.id 1 _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.specimen_id 1 _em_imaging.date 2010-12-01 _em_imaging.temperature 95 _em_imaging.nominal_defocus_min 1800 _em_imaging.nominal_defocus_max 2500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.7 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 96000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ;THE MICROSCOPE MODEL IS FEI TITAN KRIOS. 6460 RAW IMAGES WERE COLLECTED AUTOMATICALLY USING THE PACKAGE LEGINON. GOOD MICROGRAPHS WERE SELECTED ONE BY ONE ; _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details CARBON _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 3ZEE _em_vitrification.id 1 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'LIQUID ETHANE' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 3ZEE _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.details 'INDIVIDUAL MICROGRAPHS' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.film_or_detector_model 'GATAN ULTRASCAN 4000 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 NAMD 2 'MODEL FITTING' ? ? ? 1 2 VMD ? 'MODEL FITTING' ? ? ? 1 3 IMAGIC ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 2 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4I6P # _atom_sites.entry_id 3ZEE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_