HEADER CELL CYCLE 05-DEC-12 3ZEE TITLE ELECTRON CYRO-MICROSCOPY HELICAL RECONSTRUCTION OF PAR-3 N TERMINAL TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARTITIONING DEFECTIVE 3 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DUF3534 DOMAIN, RESIDUES 2-82; COMPND 5 SYNONYM: PAR-3, PARD-3, ATYPICAL PKC ISOTYPE-SPECIFIC-INTERACTING COMPND 6 PROTEIN, ASIP, ATYPICAL PKC-SPECIFIC-BINDING PROTEIN, ASBP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS CELL CYCLE EXPDTA ELECTRON MICROSCOPY AUTHOR Y.ZHANG,W.WANG,J.CHEN,K.ZHANG,F.GAO,W.GONG,M.ZHANG,F.SUN,W.FENG REVDAT 3 08-MAY-24 3ZEE 1 REMARK REVDAT 2 30-AUG-17 3ZEE 1 REMARK ATOM REVDAT 1 16-OCT-13 3ZEE 0 JRNL AUTH Y.ZHANG,W.WANG,J.CHEN,K.ZHANG,F.GAO,B.GAO,S.ZHANG,M.DONG, JRNL AUTH 2 F.BESENBACHER,W.GONG,M.ZHANG,F.SUN,W.FENG JRNL TITL STRUCTURAL INSIGHTS INTO THE INTRINSIC SELF-ASSEMBLY OF JRNL TITL 2 PAR-3 N-TERMINAL DOMAIN. JRNL REF STRUCTURE V. 21 997 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23643951 JRNL DOI 10.1016/J.STR.2013.04.004 REMARK 2 REMARK 2 RESOLUTION. 6.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NAMD, VMD, IMAGIC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4I6P REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : ENERGY FUNCTION IN NAMD2 REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--CROSS CORRELATION REFINEMENT PROTOCOL- REMARK 3 -X-RAY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.100 REMARK 3 NUMBER OF PARTICLES : 84000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: THE INITIAL MODEL WAS OBTAINED USING IHRSR. THEN REMARK 3 THE FINAL RECONSTRUCTION WERE OBTAINED BY PROJECTION MATCHING IN REMARK 3 EMAN. THE RESOLUTION CRITERIA USED WAS GOLDEN CRITERIA FSC 0.5. REMARK 3 SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2237. REMARK 3 (DEPOSITION ID: 11249). REMARK 4 REMARK 4 3ZEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290054961. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : VITREOUS ICE OF CRYO EM REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : PAR-3 N-TERMINAL DUF3534 DOMAIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : LIQUID ETHANE REMARK 245 SAMPLE BUFFER : 50 MM TRIS, 100 MM NACL, 1 MM REMARK 245 DTT AND 1 MM EDTA REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : SUPPORTING FILM IS GIG HOLELY REMARK 245 GRID. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-DEC-10 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 95.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 96000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : THE MICROSCOPE MODEL IS FEI REMARK 245 TITAN KRIOS. 6460 RAW IMAGES WERE COLLECTED AUTOMATICALLY USING REMARK 245 THE PACKAGE LEGINON. GOOD MICROGRAPHS WERE SELECTED ONE BY ONE REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = -43.84 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 3.53 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 0.883275 0.468855 0.000000 0.00000 REMARK 350 BIOMT2 1 -0.468855 0.883275 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -84.76800 REMARK 350 BIOMT1 2 0.312418 0.949945 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.949945 0.312418 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -81.23600 REMARK 350 BIOMT1 3 -0.432558 0.901606 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.901606 -0.432558 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -77.70400 REMARK 350 BIOMT1 4 -0.936458 0.350780 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.350780 -0.936458 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -74.17200 REMARK 350 BIOMT1 5 -0.918446 -0.395545 0.000000 0.00000 REMARK 350 BIOMT2 5 0.395545 -0.918446 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -70.64000 REMARK 350 BIOMT1 6 -0.388561 -0.921423 0.000000 0.00000 REMARK 350 BIOMT2 6 0.921423 -0.388561 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -67.10800 REMARK 350 BIOMT1 7 0.357879 -0.933768 0.000000 0.00000 REMARK 350 BIOMT2 7 0.933768 0.357879 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -63.57600 REMARK 350 BIOMT1 8 0.904864 -0.425700 0.000000 0.00000 REMARK 350 BIOMT2 8 0.425700 0.904864 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -60.04400 REMARK 350 BIOMT1 9 0.947546 0.319621 0.000000 0.00000 REMARK 350 BIOMT2 9 -0.319621 0.947546 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -56.51200 REMARK 350 BIOMT1 10 0.462136 0.886809 0.000000 0.00000 REMARK 350 BIOMT2 10 -0.886809 0.462136 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -52.98000 REMARK 350 BIOMT1 11 -0.280834 0.959756 0.000000 0.00000 REMARK 350 BIOMT2 11 -0.959756 -0.280834 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -49.44800 REMARK 350 BIOMT1 12 -0.867288 0.497807 0.000000 0.00000 REMARK 350 BIOMT2 12 -0.497807 -0.867288 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -45.91600 REMARK 350 BIOMT1 13 -0.970380 -0.241583 0.000000 0.00000 REMARK 350 BIOMT2 13 0.241583 -0.970380 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -42.38400 REMARK 350 BIOMT1 14 -0.532655 -0.846333 0.000000 0.00000 REMARK 350 BIOMT2 14 0.846333 -0.532655 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -38.85200 REMARK 350 BIOMT1 15 0.201933 -0.979399 0.000000 0.00000 REMARK 350 BIOMT2 15 0.979399 0.201933 0.000000 0.00000 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -35.32000 REMARK 350 BIOMT1 16 0.823978 -0.566622 0.000000 0.00000 REMARK 350 BIOMT2 16 0.566622 0.823978 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 -31.78800 REMARK 350 BIOMT1 17 0.986799 0.161948 0.000000 0.00000 REMARK 350 BIOMT2 17 -0.161948 0.986799 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -28.25600 REMARK 350 BIOMT1 18 0.599652 0.800261 0.000000 0.00000 REMARK 350 BIOMT2 18 -0.800261 0.599652 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 -24.72400 REMARK 350 BIOMT1 19 -0.121696 0.992567 0.000000 0.00000 REMARK 350 BIOMT2 19 -0.992567 -0.121696 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 -21.19200 REMARK 350 BIOMT1 20 -0.775220 0.631691 0.000000 0.00000 REMARK 350 BIOMT2 20 -0.631691 -0.775220 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -17.66000 REMARK 350 BIOMT1 21 -0.996694 -0.081243 0.000000 0.00000 REMARK 350 BIOMT2 21 0.081243 -0.996694 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 -14.12800 REMARK 350 BIOMT1 22 -0.662685 -0.748898 0.000000 0.00000 REMARK 350 BIOMT2 22 0.748898 -0.662685 0.000000 0.00000 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 -10.59600 REMARK 350 BIOMT1 23 0.040655 -0.999173 0.000000 0.00000 REMARK 350 BIOMT2 23 0.999173 0.040655 0.000000 0.00000 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 -7.06400 REMARK 350 BIOMT1 24 0.721337 -0.692584 0.000000 0.00000 REMARK 350 BIOMT2 24 0.692584 0.721337 0.000000 0.00000 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -3.53200 REMARK 350 BIOMT1 25 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 25 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 26 0.721337 0.692584 0.000000 0.00000 REMARK 350 BIOMT2 26 -0.692584 0.721337 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 3.53200 REMARK 350 BIOMT1 27 0.040655 0.999173 0.000000 0.00000 REMARK 350 BIOMT2 27 -0.999173 0.040655 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 7.06400 REMARK 350 BIOMT1 28 -0.662685 0.748898 0.000000 0.00000 REMARK 350 BIOMT2 28 -0.748898 -0.662685 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 10.59600 REMARK 350 BIOMT1 29 -0.996694 0.081243 0.000000 0.00000 REMARK 350 BIOMT2 29 -0.081243 -0.996694 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 14.12800 REMARK 350 BIOMT1 30 -0.775220 -0.631691 0.000000 0.00000 REMARK 350 BIOMT2 30 0.631691 -0.775220 0.000000 0.00000 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 17.66000 REMARK 350 BIOMT1 31 -0.121696 -0.992567 0.000000 0.00000 REMARK 350 BIOMT2 31 0.992567 -0.121696 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 21.19200 REMARK 350 BIOMT1 32 0.599652 -0.800261 0.000000 0.00000 REMARK 350 BIOMT2 32 0.800261 0.599652 0.000000 0.00000 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 24.72400 REMARK 350 BIOMT1 33 0.986799 -0.161948 0.000000 0.00000 REMARK 350 BIOMT2 33 0.161948 0.986799 0.000000 0.00000 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 28.25600 REMARK 350 BIOMT1 34 0.823978 0.566622 0.000000 0.00000 REMARK 350 BIOMT2 34 -0.566622 0.823978 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 31.78800 REMARK 350 BIOMT1 35 0.201933 0.979399 0.000000 0.00000 REMARK 350 BIOMT2 35 -0.979399 0.201933 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 35.32000 REMARK 350 BIOMT1 36 -0.532655 0.846333 0.000000 0.00000 REMARK 350 BIOMT2 36 -0.846333 -0.532655 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 38.85200 REMARK 350 BIOMT1 37 -0.970380 0.241583 0.000000 0.00000 REMARK 350 BIOMT2 37 -0.241583 -0.970380 0.000000 0.00000 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 42.38400 REMARK 350 BIOMT1 38 -0.867288 -0.497807 0.000000 0.00000 REMARK 350 BIOMT2 38 0.497807 -0.867288 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 45.91600 REMARK 350 BIOMT1 39 -0.280834 -0.959756 0.000000 0.00000 REMARK 350 BIOMT2 39 0.959756 -0.280834 0.000000 0.00000 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 49.44800 REMARK 350 BIOMT1 40 0.462136 -0.886809 0.000000 0.00000 REMARK 350 BIOMT2 40 0.886809 0.462136 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 52.98000 REMARK 350 BIOMT1 41 0.947546 -0.319621 0.000000 0.00000 REMARK 350 BIOMT2 41 0.319621 0.947546 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 56.51200 REMARK 350 BIOMT1 42 0.904864 0.425700 0.000000 0.00000 REMARK 350 BIOMT2 42 -0.425700 0.904864 0.000000 0.00000 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 60.04400 REMARK 350 BIOMT1 43 0.357879 0.933768 0.000000 0.00000 REMARK 350 BIOMT2 43 -0.933768 0.357879 0.000000 0.00000 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 63.57600 REMARK 350 BIOMT1 44 -0.388561 0.921423 0.000000 0.00000 REMARK 350 BIOMT2 44 -0.921423 -0.388561 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 67.10800 REMARK 350 BIOMT1 45 -0.918446 0.395545 0.000000 0.00000 REMARK 350 BIOMT2 45 -0.395545 -0.918446 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 70.64000 REMARK 350 BIOMT1 46 -0.936458 -0.350780 0.000000 0.00000 REMARK 350 BIOMT2 46 0.350780 -0.936458 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 74.17200 REMARK 350 BIOMT1 47 -0.432558 -0.901606 0.000000 0.00000 REMARK 350 BIOMT2 47 0.901606 -0.432558 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 77.70400 REMARK 350 BIOMT1 48 0.312418 -0.949945 0.000000 0.00000 REMARK 350 BIOMT2 48 0.949945 0.312418 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 81.23600 REMARK 350 BIOMT1 49 0.883275 -0.468855 0.000000 0.00000 REMARK 350 BIOMT2 49 0.468855 0.883275 0.000000 0.00000 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 84.76800 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 59 CA LEU A 59 C -0.160 REMARK 500 ARG A 74 CD ARG A 74 NE 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 5 CA - CB - CG2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 VAL A 13 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 PHE A 24 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR A 34 CB - CG - CD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 TYR A 34 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR A 44 CG - CD2 - CE2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 55 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 VAL A 78 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 ASP A 80 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 21 156.27 176.89 REMARK 500 VAL A 38 -3.24 -148.23 REMARK 500 LYS A 40 -112.69 -89.41 REMARK 500 ASN A 43 116.90 179.22 REMARK 500 TYR A 44 -164.72 175.14 REMARK 500 ILE A 46 49.43 -145.30 REMARK 500 ASP A 62 -37.49 -146.38 REMARK 500 VAL A 68 -76.01 -100.87 REMARK 500 ASP A 70 -157.07 -94.38 REMARK 500 GLU A 81 7.25 -161.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 79 ASP A 80 149.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 20 0.13 SIDE CHAIN REMARK 500 PHE A 24 0.09 SIDE CHAIN REMARK 500 TYR A 34 0.10 SIDE CHAIN REMARK 500 TYR A 44 0.16 SIDE CHAIN REMARK 500 ARG A 50 0.08 SIDE CHAIN REMARK 500 ARG A 74 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 1 -10.75 REMARK 500 PHE A 79 -10.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2237 RELATED DB: EMDB REMARK 900 ELECTRON CYRO-MICROSCOPY HELICAL RECONSTRUCTION OF PAR-3 N-TERMINAL REMARK 900 DOMAIN DBREF 3ZEE A 2 82 UNP Q9Z340 PARD3_RAT 2 82 SEQADV 3ZEE SER A -1 UNP Q9Z340 EXPRESSION TAG SEQADV 3ZEE GLU A 0 UNP Q9Z340 EXPRESSION TAG SEQADV 3ZEE PHE A 1 UNP Q9Z340 EXPRESSION TAG SEQRES 1 A 84 SER GLU PHE LYS VAL THR VAL CYS PHE GLY ARG THR ARG SEQRES 2 A 84 VAL VAL VAL PRO CYS GLY ASP GLY ARG MET LYS VAL PHE SEQRES 3 A 84 SER LEU ILE GLN GLN ALA VAL THR ARG TYR ARG LYS ALA SEQRES 4 A 84 VAL ALA LYS ASP PRO ASN TYR TRP ILE GLN VAL HIS ARG SEQRES 5 A 84 LEU GLU HIS GLY ASP GLY GLY ILE LEU ASP LEU ASP ASP SEQRES 6 A 84 ILE LEU CYS ASP VAL ALA ASP ASP LYS ASP ARG LEU VAL SEQRES 7 A 84 ALA VAL PHE ASP GLU GLN HELIX 1 1 VAL A 23 ALA A 39 1 17 HELIX 2 2 ILE A 64 ALA A 69 1 6 SHEET 1 AA 2 LYS A 2 VAL A 5 0 SHEET 2 AA 2 VAL A 12 PRO A 15 -1 O VAL A 12 N VAL A 5 SHEET 1 AB 2 GLN A 47 GLU A 52 0 SHEET 2 AB 2 VAL A 76 ASP A 80 -1 O VAL A 76 N GLU A 52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000