data_3ZF0 # _entry.id 3ZF0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZF0 PDBE EBI-55052 WWPDB D_1290055052 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZEZ unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE WITH DUPNHPP). ; PDB 3ZF1 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81N MUTANT WITH DUPNHPP). ; PDB 3ZF2 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE). ; PDB 3ZF3 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84I MUTANT). ; PDB 3ZF4 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y81A MUTANT WITH DUPNHPP). ; PDB 3ZF5 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84F MUTANT WITH DUPNHPP). ; PDB 3ZF6 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. (STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81A D110C S168C MUTANT WITH DUPNHPP). ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZF0 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-12-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tormo-Mas, M.A.' 1 'Donderis, J.' 2 'Garcia-Caballer, M.' 3 'Alt, A.' 4 'Mir-Sanchis, I.' 5 'Marina, A.' 6 'Penades, J.R.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism.' Mol.Cell 49 947 ? 2013 MOCEFL US 1097-2765 2168 ? 23333307 10.1016/J.MOLCEL.2012.12.013 1 'Moonlighting Bacteriophage Proteins Derepress Staphylococcal Pathogenicity Islands.' Nature 465 779 ? 2010 NATUAS UK 0028-0836 0006 ? 20473284 10.1038/NATURE09065 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tormo-Mas, M.A.' 1 primary 'Donderis, J.' 2 primary 'Garcia-Caballer, M.' 3 primary 'Alt, A.' 4 primary 'Mir-Sanchis, I.' 5 primary 'Marina, A.' 6 primary 'Penades, J.R.' 7 1 'Tormo-Mas, M.A.' 8 1 'Mir, I.' 9 1 'Shrestha, A.' 10 1 'Tallent, S.M.' 11 1 'Campoy, S.' 12 1 'Lasa, I.' 13 1 'Barbe, J.' 14 1 'Novick, R.P.' 15 1 'Christie, G.E.' 16 1 'Penades, J.R.' 17 # _cell.entry_id 3ZF0 _cell.length_a 87.120 _cell.length_b 87.120 _cell.length_c 87.120 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZF0 _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man DUTPASE 22623.617 1 3.6.1.23 YES ? 'STRUCTURE IN PRESENCE OF DUPNHPP AND MAGNESIUM' 2 non-polymer syn ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; 467.157 1 ? ? ? ? 3 non-polymer syn 'NICKEL (II) ION' 58.693 2 ? ? ? ? 4 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 SER n 1 24 MET n 1 25 THR n 1 26 GLY n 1 27 GLY n 1 28 GLN n 1 29 GLN n 1 30 MET n 1 31 GLY n 1 32 ARG n 1 33 GLY n 1 34 SER n 1 35 MET n 1 36 THR n 1 37 ASN n 1 38 THR n 1 39 LEU n 1 40 GLN n 1 41 VAL n 1 42 LYS n 1 43 LEU n 1 44 LEU n 1 45 SER n 1 46 LYS n 1 47 ASN n 1 48 ALA n 1 49 ARG n 1 50 MET n 1 51 PRO n 1 52 GLU n 1 53 ARG n 1 54 ASN n 1 55 HIS n 1 56 LYS n 1 57 THR n 1 58 ASP n 1 59 ALA n 1 60 GLY n 1 61 TYR n 1 62 ASP n 1 63 ILE n 1 64 PHE n 1 65 SER n 1 66 ALA n 1 67 GLU n 1 68 THR n 1 69 VAL n 1 70 VAL n 1 71 LEU n 1 72 GLU n 1 73 PRO n 1 74 GLN n 1 75 GLU n 1 76 LYS n 1 77 ALA n 1 78 VAL n 1 79 ILE n 1 80 LYS n 1 81 THR n 1 82 ASP n 1 83 VAL n 1 84 ALA n 1 85 VAL n 1 86 SER n 1 87 ILE n 1 88 PRO n 1 89 GLU n 1 90 GLY n 1 91 TYR n 1 92 VAL n 1 93 GLY n 1 94 LEU n 1 95 LEU n 1 96 THR n 1 97 SER n 1 98 ARG n 1 99 SER n 1 100 GLY n 1 101 VAL n 1 102 SER n 1 103 SER n 1 104 LYS n 1 105 THR n 1 106 HIS n 1 107 LEU n 1 108 VAL n 1 109 ILE n 1 110 GLU n 1 111 THR n 1 112 GLY n 1 113 LYS n 1 114 ILE n 1 115 ALA n 1 116 ALA n 1 117 GLY n 1 118 TYR n 1 119 HIS n 1 120 GLY n 1 121 ASN n 1 122 LEU n 1 123 GLY n 1 124 ILE n 1 125 ASN n 1 126 ILE n 1 127 LYS n 1 128 ASN n 1 129 ASP n 1 130 HIS n 1 131 GLU n 1 132 ASP n 1 133 ASP n 1 134 LYS n 1 135 MET n 1 136 GLN n 1 137 THR n 1 138 ILE n 1 139 PHE n 1 140 LEU n 1 141 ARG n 1 142 ASN n 1 143 ILE n 1 144 ASP n 1 145 ASN n 1 146 GLU n 1 147 LYS n 1 148 ILE n 1 149 PHE n 1 150 GLU n 1 151 LYS n 1 152 GLU n 1 153 ARG n 1 154 HIS n 1 155 LEU n 1 156 TYR n 1 157 LYS n 1 158 LEU n 1 159 GLY n 1 160 SER n 1 161 TYR n 1 162 ARG n 1 163 ILE n 1 164 GLU n 1 165 LYS n 1 166 GLY n 1 167 GLU n 1 168 ARG n 1 169 ILE n 1 170 ALA n 1 171 GLN n 1 172 LEU n 1 173 VAL n 1 174 ILE n 1 175 VAL n 1 176 PRO n 1 177 ILE n 1 178 TRP n 1 179 THR n 1 180 PRO n 1 181 GLU n 1 182 LEU n 1 183 LYS n 1 184 GLN n 1 185 VAL n 1 186 GLU n 1 187 GLU n 1 188 PHE n 1 189 GLU n 1 190 SER n 1 191 VAL n 1 192 SER n 1 193 GLU n 1 194 ARG n 1 195 GLY n 1 196 GLU n 1 197 LYS n 1 198 GLY n 1 199 PHE n 1 200 GLY n 1 201 SER n 1 202 SER n 1 203 GLY n 1 204 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STAPHYLOCOCCUS PHAGE 80ALPHA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 53369 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4ZF98_9CAUD _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A4ZF98 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZF0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 35 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A4ZF98 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 170 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZF0 MET A 1 ? UNP A4ZF98 ? ? 'expression tag' -33 1 1 3ZF0 GLY A 2 ? UNP A4ZF98 ? ? 'expression tag' -32 2 1 3ZF0 SER A 3 ? UNP A4ZF98 ? ? 'expression tag' -31 3 1 3ZF0 SER A 4 ? UNP A4ZF98 ? ? 'expression tag' -30 4 1 3ZF0 HIS A 5 ? UNP A4ZF98 ? ? 'expression tag' -29 5 1 3ZF0 HIS A 6 ? UNP A4ZF98 ? ? 'expression tag' -28 6 1 3ZF0 HIS A 7 ? UNP A4ZF98 ? ? 'expression tag' -27 7 1 3ZF0 HIS A 8 ? UNP A4ZF98 ? ? 'expression tag' -26 8 1 3ZF0 HIS A 9 ? UNP A4ZF98 ? ? 'expression tag' -25 9 1 3ZF0 HIS A 10 ? UNP A4ZF98 ? ? 'expression tag' -24 10 1 3ZF0 SER A 11 ? UNP A4ZF98 ? ? 'expression tag' -23 11 1 3ZF0 SER A 12 ? UNP A4ZF98 ? ? 'expression tag' -22 12 1 3ZF0 GLY A 13 ? UNP A4ZF98 ? ? 'expression tag' -21 13 1 3ZF0 LEU A 14 ? UNP A4ZF98 ? ? 'expression tag' -20 14 1 3ZF0 VAL A 15 ? UNP A4ZF98 ? ? 'expression tag' -19 15 1 3ZF0 PRO A 16 ? UNP A4ZF98 ? ? 'expression tag' -18 16 1 3ZF0 ARG A 17 ? UNP A4ZF98 ? ? 'expression tag' -17 17 1 3ZF0 GLY A 18 ? UNP A4ZF98 ? ? 'expression tag' -16 18 1 3ZF0 SER A 19 ? UNP A4ZF98 ? ? 'expression tag' -15 19 1 3ZF0 HIS A 20 ? UNP A4ZF98 ? ? 'expression tag' -14 20 1 3ZF0 MET A 21 ? UNP A4ZF98 ? ? 'expression tag' -13 21 1 3ZF0 ALA A 22 ? UNP A4ZF98 ? ? 'expression tag' -12 22 1 3ZF0 SER A 23 ? UNP A4ZF98 ? ? 'expression tag' -11 23 1 3ZF0 MET A 24 ? UNP A4ZF98 ? ? 'expression tag' -10 24 1 3ZF0 THR A 25 ? UNP A4ZF98 ? ? 'expression tag' -9 25 1 3ZF0 GLY A 26 ? UNP A4ZF98 ? ? 'expression tag' -8 26 1 3ZF0 GLY A 27 ? UNP A4ZF98 ? ? 'expression tag' -7 27 1 3ZF0 GLN A 28 ? UNP A4ZF98 ? ? 'expression tag' -6 28 1 3ZF0 GLN A 29 ? UNP A4ZF98 ? ? 'expression tag' -5 29 1 3ZF0 MET A 30 ? UNP A4ZF98 ? ? 'expression tag' -4 30 1 3ZF0 GLY A 31 ? UNP A4ZF98 ? ? 'expression tag' -3 31 1 3ZF0 ARG A 32 ? UNP A4ZF98 ? ? 'expression tag' -2 32 1 3ZF0 GLY A 33 ? UNP A4ZF98 ? ? 'expression tag' -1 33 1 3ZF0 SER A 34 ? UNP A4ZF98 ? ? 'expression tag' 0 34 1 3ZF0 ALA A 115 ? UNP A4ZF98 ASP 81 'engineered mutation' 81 35 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DUP non-polymer . ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; ? 'C9 H16 N3 O13 P3' 467.157 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZF0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.89 _exptl_crystal.description 'MOLECULAR REPLACEMENT WAS DONE USING AS MODEL THE STRUCTURE OF BACTERIOPHAGE 80ALPHA DUTPASE IN PRESENCE OF DUPNHPP.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2-8% TERT-BUTANOL, 0.1M TRIS (PH 8.5), 30-50% MPD OR PEG400.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9334 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength 0.9334 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZF0 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.30 _reflns.d_resolution_high 2.90 _reflns.number_obs 5103 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.06 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 8.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZF0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5015 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.30 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 99.86 _refine.ls_R_factor_obs 0.24255 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24218 _refine.ls_R_factor_R_free 0.27463 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 1.2 _refine.ls_number_reflns_R_free 60 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 83.174 _refine.aniso_B[1][1] -11.49 _refine.aniso_B[2][2] 4.11 _refine.aniso_B[3][3] 7.38 _refine.aniso_B[1][2] 5.79 _refine.aniso_B[1][3] -6.17 _refine.aniso_B[2][3] -7.90 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. INITIAL MET IS NOT TRACED. RESIDUES K117, R119, E147 AND K149 ARE TRACED AS ALA BECAUSE OF LACK OF DENSITY. RESIDUES N20-D24 AND S156-V170 ARE DISORDERED. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.534 _refine.pdbx_overall_ESU_R_Free 0.085 _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1165 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 1223 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 50.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.019 ? 1216 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.996 1.995 ? 1649 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.756 5.000 ? 147 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.711 25.094 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.940 15.000 ? 218 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.892 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.058 0.200 ? 190 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 881 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.266 8.040 ? 594 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.877 12.043 ? 739 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.757 8.862 ? 622 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.902 _refine_ls_shell.d_res_low 2.977 _refine_ls_shell.number_reflns_R_work 358 _refine_ls_shell.R_factor_R_work 0.411 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.437 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 8 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3ZF0 _struct.title ;Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase D81A mutant with dUpNHpp). ; _struct.pdbx_descriptor 'DUTPASE (E.C.3.6.1.23)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZF0 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, PATHOGENICITY ISLAND, SAPI INDUCTION, GENE TRANSF MOONLIGHTING PROTEINS, DUTP, G-PROTEIN, P-LOOP' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 98 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 105 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 64 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 71 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D NI . NI ? ? ? 1_555 A ASP 129 OD1 ? ? A NI 1157 A ASP 95 9_555 ? ? ? ? ? ? ? 2.546 ? metalc2 metalc ? ? D NI . NI ? ? ? 1_555 A ASP 129 OD1 ? ? A NI 1157 A ASP 95 1_555 ? ? ? ? ? ? ? 2.546 ? metalc3 metalc ? ? D NI . NI ? ? ? 1_555 A ASP 129 OD1 ? ? A NI 1157 A ASP 95 5_555 ? ? ? ? ? ? ? 2.546 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 4 ? AC ? 2 ? AD ? 3 ? AE ? 2 ? AF ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AE 1 2 ? anti-parallel AF 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLN A 40 ? LEU A 43 ? GLN A 6 LEU A 9 AA 2 VAL A 83 ? SER A 86 ? VAL A 49 SER A 52 AB 1 TYR A 61 ? PHE A 64 ? TYR A 27 PHE A 30 AB 2 ARG A 168 ? PRO A 176 ? ARG A 134 PRO A 142 AB 3 TYR A 91 ? SER A 97 ? TYR A 57 SER A 63 AB 4 GLY A 112 ? ILE A 114 ? GLY A 78 ILE A 80 AC 1 VAL A 69 ? LEU A 71 ? VAL A 35 LEU A 37 AC 2 TYR A 161 ? ILE A 163 ? TYR A 127 ILE A 129 AD 1 LYS A 76 ? LYS A 80 ? LYS A 42 LYS A 46 AD 2 GLY A 123 ? ASN A 128 ? GLY A 89 ASN A 94 AD 3 LEU A 107 ? ILE A 109 ? LEU A 73 ILE A 75 AE 1 GLN A 136 ? THR A 137 ? GLN A 102 THR A 103 AE 2 TYR A 156 ? LYS A 157 ? TYR A 122 LYS A 123 AF 1 LEU A 140 ? ARG A 141 ? LEU A 106 ARG A 107 AF 2 LYS A 147 ? ILE A 148 ? LYS A 113 ILE A 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 42 ? N LYS A 8 O ALA A 84 ? O ALA A 50 AB 1 2 O ILE A 63 ? O ILE A 29 N ILE A 169 ? N ILE A 135 AB 2 3 N VAL A 175 ? N VAL A 141 O VAL A 92 ? O VAL A 58 AB 3 4 N LEU A 95 ? N LEU A 61 O GLY A 112 ? O GLY A 78 AC 1 2 N LEU A 71 ? N LEU A 37 O TYR A 161 ? O TYR A 127 AD 1 2 N ILE A 79 ? N ILE A 45 O ILE A 124 ? O ILE A 90 AD 2 3 N LYS A 127 ? N LYS A 93 O VAL A 108 ? O VAL A 74 AE 1 2 N THR A 137 ? N THR A 103 O TYR A 156 ? O TYR A 122 AF 1 2 N LEU A 140 ? N LEU A 106 O ILE A 148 ? O ILE A 114 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE DUP A 777' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NI A 1157' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ARG A 98 ? ARG A 64 . ? 5_555 ? 2 AC1 10 SER A 99 ? SER A 65 . ? 5_555 ? 3 AC1 10 GLY A 112 ? GLY A 78 . ? 1_555 ? 4 AC1 10 LYS A 113 ? LYS A 79 . ? 1_555 ? 5 AC1 10 ALA A 115 ? ALA A 81 . ? 1_555 ? 6 AC1 10 TYR A 118 ? TYR A 84 . ? 1_555 ? 7 AC1 10 GLY A 123 ? GLY A 89 . ? 1_555 ? 8 AC1 10 ASN A 125 ? ASN A 91 . ? 1_555 ? 9 AC1 10 GLN A 171 ? GLN A 137 . ? 5_555 ? 10 AC1 10 HOH E . ? HOH A 2012 . ? 5_555 ? 11 AC2 6 GLN A 74 ? GLN A 40 . ? 1_555 ? 12 AC2 6 GLN A 74 ? GLN A 40 . ? 9_555 ? 13 AC2 6 GLN A 74 ? GLN A 40 . ? 5_555 ? 14 AC2 6 ASP A 129 ? ASP A 95 . ? 5_555 ? 15 AC2 6 ASP A 129 ? ASP A 95 . ? 9_555 ? 16 AC2 6 ASP A 129 ? ASP A 95 . ? 1_555 ? # _database_PDB_matrix.entry_id 3ZF0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZF0 _atom_sites.fract_transf_matrix[1][1] 0.011478 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011478 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011478 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -33 ? ? ? A . n A 1 2 GLY 2 -32 ? ? ? A . n A 1 3 SER 3 -31 ? ? ? A . n A 1 4 SER 4 -30 ? ? ? A . n A 1 5 HIS 5 -29 ? ? ? A . n A 1 6 HIS 6 -28 ? ? ? A . n A 1 7 HIS 7 -27 ? ? ? A . n A 1 8 HIS 8 -26 ? ? ? A . n A 1 9 HIS 9 -25 ? ? ? A . n A 1 10 HIS 10 -24 ? ? ? A . n A 1 11 SER 11 -23 ? ? ? A . n A 1 12 SER 12 -22 ? ? ? A . n A 1 13 GLY 13 -21 ? ? ? A . n A 1 14 LEU 14 -20 ? ? ? A . n A 1 15 VAL 15 -19 ? ? ? A . n A 1 16 PRO 16 -18 ? ? ? A . n A 1 17 ARG 17 -17 ? ? ? A . n A 1 18 GLY 18 -16 ? ? ? A . n A 1 19 SER 19 -15 ? ? ? A . n A 1 20 HIS 20 -14 ? ? ? A . n A 1 21 MET 21 -13 ? ? ? A . n A 1 22 ALA 22 -12 ? ? ? A . n A 1 23 SER 23 -11 ? ? ? A . n A 1 24 MET 24 -10 ? ? ? A . n A 1 25 THR 25 -9 ? ? ? A . n A 1 26 GLY 26 -8 ? ? ? A . n A 1 27 GLY 27 -7 ? ? ? A . n A 1 28 GLN 28 -6 ? ? ? A . n A 1 29 GLN 29 -5 ? ? ? A . n A 1 30 MET 30 -4 ? ? ? A . n A 1 31 GLY 31 -3 ? ? ? A . n A 1 32 ARG 32 -2 ? ? ? A . n A 1 33 GLY 33 -1 ? ? ? A . n A 1 34 SER 34 0 ? ? ? A . n A 1 35 MET 35 1 ? ? ? A . n A 1 36 THR 36 2 2 THR THR A . n A 1 37 ASN 37 3 3 ASN ASN A . n A 1 38 THR 38 4 4 THR THR A . n A 1 39 LEU 39 5 5 LEU LEU A . n A 1 40 GLN 40 6 6 GLN GLN A . n A 1 41 VAL 41 7 7 VAL VAL A . n A 1 42 LYS 42 8 8 LYS LYS A . n A 1 43 LEU 43 9 9 LEU LEU A . n A 1 44 LEU 44 10 10 LEU LEU A . n A 1 45 SER 45 11 11 SER SER A . n A 1 46 LYS 46 12 12 LYS LYS A . n A 1 47 ASN 47 13 13 ASN ASN A . n A 1 48 ALA 48 14 14 ALA ALA A . n A 1 49 ARG 49 15 15 ARG ARG A . n A 1 50 MET 50 16 16 MET MET A . n A 1 51 PRO 51 17 17 PRO PRO A . n A 1 52 GLU 52 18 18 GLU GLU A . n A 1 53 ARG 53 19 19 ARG ARG A . n A 1 54 ASN 54 20 ? ? ? A . n A 1 55 HIS 55 21 ? ? ? A . n A 1 56 LYS 56 22 ? ? ? A . n A 1 57 THR 57 23 ? ? ? A . n A 1 58 ASP 58 24 ? ? ? A . n A 1 59 ALA 59 25 25 ALA ALA A . n A 1 60 GLY 60 26 26 GLY GLY A . n A 1 61 TYR 61 27 27 TYR TYR A . n A 1 62 ASP 62 28 28 ASP ASP A . n A 1 63 ILE 63 29 29 ILE ILE A . n A 1 64 PHE 64 30 30 PHE PHE A . n A 1 65 SER 65 31 31 SER SER A . n A 1 66 ALA 66 32 32 ALA ALA A . n A 1 67 GLU 67 33 33 GLU GLU A . n A 1 68 THR 68 34 34 THR THR A . n A 1 69 VAL 69 35 35 VAL VAL A . n A 1 70 VAL 70 36 36 VAL VAL A . n A 1 71 LEU 71 37 37 LEU LEU A . n A 1 72 GLU 72 38 38 GLU GLU A . n A 1 73 PRO 73 39 39 PRO PRO A . n A 1 74 GLN 74 40 40 GLN GLN A . n A 1 75 GLU 75 41 41 GLU GLU A . n A 1 76 LYS 76 42 42 LYS LYS A . n A 1 77 ALA 77 43 43 ALA ALA A . n A 1 78 VAL 78 44 44 VAL VAL A . n A 1 79 ILE 79 45 45 ILE ILE A . n A 1 80 LYS 80 46 46 LYS LYS A . n A 1 81 THR 81 47 47 THR THR A . n A 1 82 ASP 82 48 48 ASP ASP A . n A 1 83 VAL 83 49 49 VAL VAL A . n A 1 84 ALA 84 50 50 ALA ALA A . n A 1 85 VAL 85 51 51 VAL VAL A . n A 1 86 SER 86 52 52 SER SER A . n A 1 87 ILE 87 53 53 ILE ILE A . n A 1 88 PRO 88 54 54 PRO PRO A . n A 1 89 GLU 89 55 55 GLU GLU A . n A 1 90 GLY 90 56 56 GLY GLY A . n A 1 91 TYR 91 57 57 TYR TYR A . n A 1 92 VAL 92 58 58 VAL VAL A . n A 1 93 GLY 93 59 59 GLY GLY A . n A 1 94 LEU 94 60 60 LEU LEU A . n A 1 95 LEU 95 61 61 LEU LEU A . n A 1 96 THR 96 62 62 THR THR A . n A 1 97 SER 97 63 63 SER SER A . n A 1 98 ARG 98 64 64 ARG ARG A . n A 1 99 SER 99 65 65 SER SER A . n A 1 100 GLY 100 66 66 GLY GLY A . n A 1 101 VAL 101 67 67 VAL VAL A . n A 1 102 SER 102 68 68 SER SER A . n A 1 103 SER 103 69 69 SER SER A . n A 1 104 LYS 104 70 70 LYS LYS A . n A 1 105 THR 105 71 71 THR THR A . n A 1 106 HIS 106 72 72 HIS HIS A . n A 1 107 LEU 107 73 73 LEU LEU A . n A 1 108 VAL 108 74 74 VAL VAL A . n A 1 109 ILE 109 75 75 ILE ILE A . n A 1 110 GLU 110 76 76 GLU GLU A . n A 1 111 THR 111 77 77 THR THR A . n A 1 112 GLY 112 78 78 GLY GLY A . n A 1 113 LYS 113 79 79 LYS LYS A . n A 1 114 ILE 114 80 80 ILE ILE A . n A 1 115 ALA 115 81 81 ALA ALA A . n A 1 116 ALA 116 82 82 ALA ALA A . n A 1 117 GLY 117 83 83 GLY GLY A . n A 1 118 TYR 118 84 84 TYR TYR A . n A 1 119 HIS 119 85 85 HIS HIS A . n A 1 120 GLY 120 86 86 GLY GLY A . n A 1 121 ASN 121 87 87 ASN ASN A . n A 1 122 LEU 122 88 88 LEU LEU A . n A 1 123 GLY 123 89 89 GLY GLY A . n A 1 124 ILE 124 90 90 ILE ILE A . n A 1 125 ASN 125 91 91 ASN ASN A . n A 1 126 ILE 126 92 92 ILE ILE A . n A 1 127 LYS 127 93 93 LYS LYS A . n A 1 128 ASN 128 94 94 ASN ASN A . n A 1 129 ASP 129 95 95 ASP ASP A . n A 1 130 HIS 130 96 96 HIS HIS A . n A 1 131 GLU 131 97 97 GLU GLU A . n A 1 132 ASP 132 98 98 ASP ASP A . n A 1 133 ASP 133 99 99 ASP ASP A . n A 1 134 LYS 134 100 100 LYS LYS A . n A 1 135 MET 135 101 101 MET MET A . n A 1 136 GLN 136 102 102 GLN GLN A . n A 1 137 THR 137 103 103 THR THR A . n A 1 138 ILE 138 104 104 ILE ILE A . n A 1 139 PHE 139 105 105 PHE PHE A . n A 1 140 LEU 140 106 106 LEU LEU A . n A 1 141 ARG 141 107 107 ARG ARG A . n A 1 142 ASN 142 108 108 ASN ASN A . n A 1 143 ILE 143 109 109 ILE ILE A . n A 1 144 ASP 144 110 110 ASP ASP A . n A 1 145 ASN 145 111 111 ASN ASN A . n A 1 146 GLU 146 112 112 GLU GLU A . n A 1 147 LYS 147 113 113 LYS LYS A . n A 1 148 ILE 148 114 114 ILE ILE A . n A 1 149 PHE 149 115 115 PHE PHE A . n A 1 150 GLU 150 116 116 GLU GLU A . n A 1 151 LYS 151 117 117 LYS LYS A . n A 1 152 GLU 152 118 118 GLU GLU A . n A 1 153 ARG 153 119 119 ARG ARG A . n A 1 154 HIS 154 120 120 HIS HIS A . n A 1 155 LEU 155 121 121 LEU LEU A . n A 1 156 TYR 156 122 122 TYR TYR A . n A 1 157 LYS 157 123 123 LYS LYS A . n A 1 158 LEU 158 124 124 LEU LEU A . n A 1 159 GLY 159 125 125 GLY GLY A . n A 1 160 SER 160 126 126 SER SER A . n A 1 161 TYR 161 127 127 TYR TYR A . n A 1 162 ARG 162 128 128 ARG ARG A . n A 1 163 ILE 163 129 129 ILE ILE A . n A 1 164 GLU 164 130 130 GLU GLU A . n A 1 165 LYS 165 131 131 LYS LYS A . n A 1 166 GLY 166 132 132 GLY GLY A . n A 1 167 GLU 167 133 133 GLU GLU A . n A 1 168 ARG 168 134 134 ARG ARG A . n A 1 169 ILE 169 135 135 ILE ILE A . n A 1 170 ALA 170 136 136 ALA ALA A . n A 1 171 GLN 171 137 137 GLN GLN A . n A 1 172 LEU 172 138 138 LEU LEU A . n A 1 173 VAL 173 139 139 VAL VAL A . n A 1 174 ILE 174 140 140 ILE ILE A . n A 1 175 VAL 175 141 141 VAL VAL A . n A 1 176 PRO 176 142 142 PRO PRO A . n A 1 177 ILE 177 143 143 ILE ILE A . n A 1 178 TRP 178 144 144 TRP TRP A . n A 1 179 THR 179 145 145 THR THR A . n A 1 180 PRO 180 146 146 PRO PRO A . n A 1 181 GLU 181 147 147 GLU GLU A . n A 1 182 LEU 182 148 148 LEU LEU A . n A 1 183 LYS 183 149 149 LYS LYS A . n A 1 184 GLN 184 150 150 GLN GLN A . n A 1 185 VAL 185 151 151 VAL VAL A . n A 1 186 GLU 186 152 152 GLU GLU A . n A 1 187 GLU 187 153 153 GLU GLU A . n A 1 188 PHE 188 154 154 PHE PHE A . n A 1 189 GLU 189 155 155 GLU GLU A . n A 1 190 SER 190 156 ? ? ? A . n A 1 191 VAL 191 157 ? ? ? A . n A 1 192 SER 192 158 ? ? ? A . n A 1 193 GLU 193 159 ? ? ? A . n A 1 194 ARG 194 160 ? ? ? A . n A 1 195 GLY 195 161 ? ? ? A . n A 1 196 GLU 196 162 ? ? ? A . n A 1 197 LYS 197 163 ? ? ? A . n A 1 198 GLY 198 164 ? ? ? A . n A 1 199 PHE 199 165 ? ? ? A . n A 1 200 GLY 200 166 ? ? ? A . n A 1 201 SER 201 167 ? ? ? A . n A 1 202 SER 202 168 ? ? ? A . n A 1 203 GLY 203 169 ? ? ? A . n A 1 204 VAL 204 170 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUP 1 777 777 DUP DUP A . C 3 NI 1 1156 1156 NI NI A . D 3 NI 1 1157 1157 NI NI A . E 4 HOH 1 2002 2002 HOH HOH A . E 4 HOH 2 2003 2003 HOH HOH A . E 4 HOH 3 2004 2004 HOH HOH A . E 4 HOH 4 2005 2005 HOH HOH A . E 4 HOH 5 2006 2006 HOH HOH A . E 4 HOH 6 2007 2007 HOH HOH A . E 4 HOH 7 2008 2008 HOH HOH A . E 4 HOH 8 2009 2009 HOH HOH A . E 4 HOH 9 2010 2010 HOH HOH A . E 4 HOH 10 2011 2011 HOH HOH A . E 4 HOH 11 2012 2012 HOH HOH A . E 4 HOH 12 2013 2013 HOH HOH A . E 4 HOH 13 2014 2014 HOH HOH A . E 4 HOH 14 2015 2015 HOH HOH A . E 4 HOH 15 2016 2016 HOH HOH A . E 4 HOH 16 2017 2017 HOH HOH A . E 4 HOH 17 2018 2018 HOH HOH A . E 4 HOH 18 2019 2019 HOH HOH A . E 4 HOH 19 2020 2020 HOH HOH A . E 4 HOH 20 2021 2021 HOH HOH A . E 4 HOH 21 2022 2022 HOH HOH A . E 4 HOH 22 2024 2024 HOH HOH A . E 4 HOH 23 2025 2025 HOH HOH A . E 4 HOH 24 2026 2026 HOH HOH A . E 4 HOH 25 2027 2027 HOH HOH A . E 4 HOH 26 2028 2028 HOH HOH A . E 4 HOH 27 2029 2029 HOH HOH A . E 4 HOH 28 2030 2030 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10820 ? 1 MORE -54.2 ? 1 'SSA (A^2)' 20110 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NI 1156 ? C NI . 2 1 A NI 1157 ? D NI . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 129 ? A ASP 95 ? 9_555 NI ? D NI . ? A NI 1157 ? 1_555 OD1 ? A ASP 129 ? A ASP 95 ? 1_555 100.7 ? 2 OD1 ? A ASP 129 ? A ASP 95 ? 9_555 NI ? D NI . ? A NI 1157 ? 1_555 OD1 ? A ASP 129 ? A ASP 95 ? 5_555 100.7 ? 3 OD1 ? A ASP 129 ? A ASP 95 ? 1_555 NI ? D NI . ? A NI 1157 ? 1_555 OD1 ? A ASP 129 ? A ASP 95 ? 5_555 100.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-30 2 'Structure model' 1 1 2013-03-20 3 'Structure model' 1 2 2013-04-03 4 'Structure model' 1 3 2013-04-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other 6 4 'Structure model' 'Structure summary' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.7.0032 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CA _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 PHE _pdbx_validate_rmsd_bond.auth_seq_id_1 115 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 PHE _pdbx_validate_rmsd_bond.auth_seq_id_2 115 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.288 _pdbx_validate_rmsd_bond.bond_target_value 1.525 _pdbx_validate_rmsd_bond.bond_deviation -0.237 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.026 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 115 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PHE _pdbx_validate_rmsd_angle.auth_seq_id_2 115 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PHE _pdbx_validate_rmsd_angle.auth_seq_id_3 115 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 132.29 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation 21.29 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 3 ? ? -93.21 58.73 2 1 LYS A 100 ? ? 68.14 -12.13 3 1 ASN A 111 ? ? 57.58 6.07 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2004 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.10 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 97 ? CG ? A GLU 131 CG 2 1 Y 1 A GLU 97 ? CD ? A GLU 131 CD 3 1 Y 1 A GLU 97 ? OE1 ? A GLU 131 OE1 4 1 Y 1 A GLU 97 ? OE2 ? A GLU 131 OE2 5 1 Y 1 A LYS 117 ? CG ? A LYS 151 CG 6 1 Y 1 A LYS 117 ? CD ? A LYS 151 CD 7 1 Y 1 A LYS 117 ? CE ? A LYS 151 CE 8 1 Y 1 A LYS 117 ? NZ ? A LYS 151 NZ 9 1 Y 1 A ARG 119 ? CG ? A ARG 153 CG 10 1 Y 1 A ARG 119 ? CD ? A ARG 153 CD 11 1 Y 1 A ARG 119 ? NE ? A ARG 153 NE 12 1 Y 1 A ARG 119 ? CZ ? A ARG 153 CZ 13 1 Y 1 A ARG 119 ? NH1 ? A ARG 153 NH1 14 1 Y 1 A ARG 119 ? NH2 ? A ARG 153 NH2 15 1 Y 1 A GLU 147 ? CG ? A GLU 181 CG 16 1 Y 1 A GLU 147 ? CD ? A GLU 181 CD 17 1 Y 1 A GLU 147 ? OE1 ? A GLU 181 OE1 18 1 Y 1 A GLU 147 ? OE2 ? A GLU 181 OE2 19 1 Y 1 A LYS 149 ? CG ? A LYS 183 CG 20 1 Y 1 A LYS 149 ? CD ? A LYS 183 CD 21 1 Y 1 A LYS 149 ? CE ? A LYS 183 CE 22 1 Y 1 A LYS 149 ? NZ ? A LYS 183 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -33 ? A MET 1 2 1 Y 1 A GLY -32 ? A GLY 2 3 1 Y 1 A SER -31 ? A SER 3 4 1 Y 1 A SER -30 ? A SER 4 5 1 Y 1 A HIS -29 ? A HIS 5 6 1 Y 1 A HIS -28 ? A HIS 6 7 1 Y 1 A HIS -27 ? A HIS 7 8 1 Y 1 A HIS -26 ? A HIS 8 9 1 Y 1 A HIS -25 ? A HIS 9 10 1 Y 1 A HIS -24 ? A HIS 10 11 1 Y 1 A SER -23 ? A SER 11 12 1 Y 1 A SER -22 ? A SER 12 13 1 Y 1 A GLY -21 ? A GLY 13 14 1 Y 1 A LEU -20 ? A LEU 14 15 1 Y 1 A VAL -19 ? A VAL 15 16 1 Y 1 A PRO -18 ? A PRO 16 17 1 Y 1 A ARG -17 ? A ARG 17 18 1 Y 1 A GLY -16 ? A GLY 18 19 1 Y 1 A SER -15 ? A SER 19 20 1 Y 1 A HIS -14 ? A HIS 20 21 1 Y 1 A MET -13 ? A MET 21 22 1 Y 1 A ALA -12 ? A ALA 22 23 1 Y 1 A SER -11 ? A SER 23 24 1 Y 1 A MET -10 ? A MET 24 25 1 Y 1 A THR -9 ? A THR 25 26 1 Y 1 A GLY -8 ? A GLY 26 27 1 Y 1 A GLY -7 ? A GLY 27 28 1 Y 1 A GLN -6 ? A GLN 28 29 1 Y 1 A GLN -5 ? A GLN 29 30 1 Y 1 A MET -4 ? A MET 30 31 1 Y 1 A GLY -3 ? A GLY 31 32 1 Y 1 A ARG -2 ? A ARG 32 33 1 Y 1 A GLY -1 ? A GLY 33 34 1 Y 1 A SER 0 ? A SER 34 35 1 Y 1 A MET 1 ? A MET 35 36 1 Y 1 A ASN 20 ? A ASN 54 37 1 Y 1 A HIS 21 ? A HIS 55 38 1 Y 1 A LYS 22 ? A LYS 56 39 1 Y 1 A THR 23 ? A THR 57 40 1 Y 1 A ASP 24 ? A ASP 58 41 1 Y 1 A SER 156 ? A SER 190 42 1 Y 1 A VAL 157 ? A VAL 191 43 1 Y 1 A SER 158 ? A SER 192 44 1 Y 1 A GLU 159 ? A GLU 193 45 1 Y 1 A ARG 160 ? A ARG 194 46 1 Y 1 A GLY 161 ? A GLY 195 47 1 Y 1 A GLU 162 ? A GLU 196 48 1 Y 1 A LYS 163 ? A LYS 197 49 1 Y 1 A GLY 164 ? A GLY 198 50 1 Y 1 A PHE 165 ? A PHE 199 51 1 Y 1 A GLY 166 ? A GLY 200 52 1 Y 1 A SER 167 ? A SER 201 53 1 Y 1 A SER 168 ? A SER 202 54 1 Y 1 A GLY 169 ? A GLY 203 55 1 Y 1 A VAL 170 ? A VAL 204 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; DUP 3 'NICKEL (II) ION' NI 4 water HOH #