HEADER PROTEIN BINDING 18-DEC-12 3ZGK TITLE NMR SOLUTION STRUCTURE OF THE RXLR EFFECTOR AVR3A11 FROM PHYTOPHTHORA TITLE 2 CAPSICI COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVR3A11; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYTOPHTHORA CAPSICI; SOURCE 3 ORGANISM_TAXID: 4784; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPIN-F KEYWDS PROTEIN BINDING, PLANT DISEASES, RXLR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.TOLCHARD,V.S.CHAMBERS,L.S.BOUTEMY,R.L.GATHERCOLE,M.J.BANFIELD, AUTHOR 2 T.M.BLUMENSCHEIN REVDAT 4 19-JUN-24 3ZGK 1 REMARK REVDAT 3 14-JUN-23 3ZGK 1 REMARK REVDAT 2 03-APR-19 3ZGK 1 AUTHOR JRNL REMARK ATOM REVDAT 1 08-JAN-14 3ZGK 0 JRNL AUTH J.TOLCHARD,V.S.CHAMBERS,L.S.BOUTEMY,R.L.GATHERCOLE, JRNL AUTH 2 M.J.BANFIELD,T.M.BLUMENSCHEIN JRNL TITL NMR SOLUTION STRUCTURE OF THE AVR3A11 FROM PHYTOPHTHORA JRNL TITL 2 CAPSI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED USING THE REMARK 3 SCRIPTS FROM THE RECOORD DATABASE REMARK 4 REMARK 4 3ZGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055114. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 8.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O, 200 MICROM REMARK 210 DSS, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-15N HSQC; 1H-13C HSQC; 1H-15N REMARK 210 NOESY; 1H-13C NOESY; CBCACONH; REMARK 210 HNCACB; CCCONH; H(CCO)NH; 1H-15N REMARK 210 TOCSY; AROMATIC 1H-13C TROSY; REMARK 210 HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR ANALYSIS REMARK 210 ANALYSIS, UNIO, CYANA, CNS USING REMARK 210 RECOORD SCRIPTS SCRIPTS REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 108 HZ3 LYS A 111 1.55 REMARK 500 OD1 ASP A 66 HZ2 LYS A 76 1.59 REMARK 500 HZ1 LYS A 72 OD2 ASP A 108 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 62 31.24 -98.82 REMARK 500 1 LYS A 69 11.21 -143.73 REMARK 500 1 THR A 70 -159.12 -92.75 REMARK 500 1 ALA A 84 -61.50 -91.27 REMARK 500 1 LEU A 110 34.34 -97.58 REMARK 500 2 THR A 70 49.99 -146.08 REMARK 500 2 ALA A 84 -61.80 -95.95 REMARK 500 2 LEU A 103 -79.68 31.80 REMARK 500 2 SER A 112 45.28 -76.01 REMARK 500 2 TYR A 118 25.47 -72.10 REMARK 500 3 PRO A 62 46.93 -87.95 REMARK 500 3 LEU A 64 -67.64 68.36 REMARK 500 3 ASP A 66 -76.30 -106.54 REMARK 500 3 LYS A 69 118.95 81.25 REMARK 500 3 LYS A 113 175.92 86.57 REMARK 500 4 LYS A 69 -169.19 -101.69 REMARK 500 4 TYR A 118 26.65 -75.13 REMARK 500 5 LEU A 64 -35.71 -141.20 REMARK 500 5 THR A 65 -75.03 -143.92 REMARK 500 5 PHE A 68 -171.15 58.20 REMARK 500 5 LEU A 103 -78.23 57.13 REMARK 500 5 THR A 114 -48.97 73.09 REMARK 500 6 THR A 65 85.27 -154.56 REMARK 500 6 LEU A 67 -66.76 71.06 REMARK 500 6 LYS A 111 78.06 73.42 REMARK 500 6 LYS A 113 -44.24 -161.30 REMARK 500 6 ARG A 115 -73.35 67.75 REMARK 500 7 LEU A 64 -85.66 -97.61 REMARK 500 7 LEU A 67 -166.28 59.15 REMARK 500 7 LYS A 69 9.21 -151.64 REMARK 500 7 PRO A 86 1.58 -65.92 REMARK 500 7 SER A 112 90.30 -62.48 REMARK 500 7 LYS A 113 96.33 78.74 REMARK 500 7 THR A 114 -89.95 43.87 REMARK 500 8 LEU A 64 -52.82 -172.41 REMARK 500 8 THR A 70 136.42 59.16 REMARK 500 8 SER A 112 115.65 -177.88 REMARK 500 8 LYS A 113 -72.84 66.25 REMARK 500 8 ARG A 115 -78.26 65.84 REMARK 500 9 LYS A 69 -161.28 53.10 REMARK 500 9 THR A 70 -50.48 -126.30 REMARK 500 9 ASP A 85 79.99 -112.75 REMARK 500 9 LEU A 103 73.64 62.79 REMARK 500 9 THR A 104 -60.80 -170.63 REMARK 500 9 LYS A 111 127.05 84.61 REMARK 500 9 LYS A 113 -82.74 67.73 REMARK 500 9 ARG A 129 2.94 -66.71 REMARK 500 10 LEU A 103 -84.36 38.09 REMARK 500 10 LYS A 111 61.88 26.64 REMARK 500 10 THR A 114 -47.90 -168.35 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 129 0.08 SIDE CHAIN REMARK 500 3 ARG A 129 0.10 SIDE CHAIN REMARK 500 5 ARG A 129 0.10 SIDE CHAIN REMARK 500 7 ARG A 129 0.11 SIDE CHAIN REMARK 500 9 ARG A 120 0.09 SIDE CHAIN REMARK 500 13 ARG A 129 0.10 SIDE CHAIN REMARK 500 14 ARG A 120 0.09 SIDE CHAIN REMARK 500 14 ARG A 129 0.09 SIDE CHAIN REMARK 500 18 ARG A 120 0.09 SIDE CHAIN REMARK 500 20 ARG A 129 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18910 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE 3ZGK SEQUENCE IS MAPPED TO THE CLOSEST UNIPROT REMARK 999 REFERENCE G1K3S4. AUTHOR SUGGESTS THAT RESIDUES 63-69 IN THE REMARK 999 COORDINATES ARE ACTUALLY FROM THE WILD TYPE PROTEIN. DBREF 3ZGK A 70 132 UNP G1K3S4 G1K3S4_PHYCP 3 65 SEQADV 3ZGK GLY A 61 UNP G1K3S4 EXPRESSION TAG SEQADV 3ZGK PRO A 62 UNP G1K3S4 EXPRESSION TAG SEQADV 3ZGK GLY A 63 UNP G1K3S4 SEE REMARK 999 SEQADV 3ZGK LEU A 64 UNP G1K3S4 SEE REMARK 999 SEQADV 3ZGK THR A 65 UNP G1K3S4 SEE REMARK 999 SEQADV 3ZGK ASP A 66 UNP G1K3S4 SEE REMARK 999 SEQADV 3ZGK LEU A 67 UNP G1K3S4 SEE REMARK 999 SEQADV 3ZGK PHE A 68 UNP G1K3S4 SEE REMARK 999 SEQADV 3ZGK LYS A 69 UNP G1K3S4 SEE REMARK 999 SEQRES 1 A 72 GLY PRO GLY LEU THR ASP LEU PHE LYS THR GLU LYS ALA SEQRES 2 A 72 ALA VAL LYS LYS MET ALA LYS ALA ILE MET ALA ASP PRO SEQRES 3 A 72 SER LYS ALA ASP ASP VAL TYR GLN LYS TRP ALA ASP LYS SEQRES 4 A 72 GLY TYR THR LEU THR GLN LEU SER ASP PHE LEU LYS SER SEQRES 5 A 72 LYS THR ARG GLY LYS TYR ASP ARG VAL TYR ASN GLY TYR SEQRES 6 A 72 MET THR TYR ARG ASP TYR VAL HELIX 1 1 THR A 70 MET A 83 1 14 HELIX 2 2 LYS A 88 LYS A 99 1 12 HELIX 3 3 THR A 102 THR A 104 5 3 HELIX 4 4 GLN A 105 LYS A 111 1 7 HELIX 5 5 TYR A 118 THR A 127 1 10 HELIX 6 6 TYR A 128 TYR A 131 5 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1