HEADER OXIDOREDUCTASE 19-DEC-12 3ZGY TITLE APO-STRUCTURE OF R-SELECTIVE IMINE REDUCTASE FROM STREPTOMYCES TITLE 2 KANAMYCETICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: R-IMINE REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.5.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES KANAMYCETICUS; SOURCE 3 ORGANISM_TAXID: 1967; SOURCE 4 STRAIN: 12-6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS OXIDOREDUCTASE, DEHYDROGENASE EXPDTA X-RAY DIFFRACTION AUTHOR M.RODRIGUEZ MATA,A.FRANK,G.GROGAN REVDAT 4 20-DEC-23 3ZGY 1 REMARK REVDAT 3 05-AUG-15 3ZGY 1 TITLE REVDAT 2 31-JUL-13 3ZGY 1 JRNL REVDAT 1 17-JUL-13 3ZGY 0 JRNL AUTH M.RODRIGUEZ MATA,A.FRANK,E.WELLS,F.LEIPOLD,N.J.TURNER, JRNL AUTH 2 S.HART,J.P.TURKNBURG,G.GROGAN JRNL TITL STRUCTURE AND ACTIVITY OF NADPH-DEPENDENT REDUCTASE Q1EQE0 JRNL TITL 2 FROM STREPTOMYCES KANAMYCETICUS, WHICH CATALYSES THE JRNL TITL 3 R-SELECTIVE REDUCTION OF AN IMINE SUBSTRATE. JRNL REF CHEMBIOCHEM V. 14 1372 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23813853 JRNL DOI 10.1002/CBIC.201300321 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : 5.22000 REMARK 3 B33 (A**2) : -3.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.349 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.580 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8125 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7564 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11131 ; 1.636 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17260 ; 1.172 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1125 ; 6.202 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;37.390 ;23.599 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1021 ;16.318 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;22.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1309 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9584 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1818 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4524 ; 5.927 ; 6.374 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4523 ; 5.926 ; 6.374 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5643 ; 8.363 ; 9.558 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3601 ; 5.903 ; 6.441 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 108.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 1YB4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 10 MG ML-1. 35% (V/V) REMARK 280 TASCIMATE PH 7.0 WITH 2.5% (V/V) ETHYLENE GLYCOL. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 101.70500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 101.70500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 65.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 MET A 11 REMARK 465 MET A 12 REMARK 465 ARG A 13 REMARK 465 ASN A 14 REMARK 465 GLN A 15 REMARK 465 GLN A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 465 LYS A 54 REMARK 465 ALA A 55 REMARK 465 GLU A 56 REMARK 465 SER A 307 REMARK 465 GLY A 308 REMARK 465 LYS A 309 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 PRO B 5 REMARK 465 SER B 6 REMARK 465 THR B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 ARG B 10 REMARK 465 MET B 11 REMARK 465 MET B 12 REMARK 465 ARG B 13 REMARK 465 ASN B 14 REMARK 465 GLN B 15 REMARK 465 GLN B 16 REMARK 465 ALA B 17 REMARK 465 GLU B 18 REMARK 465 THR B 51 REMARK 465 ALA B 52 REMARK 465 ALA B 53 REMARK 465 LYS B 54 REMARK 465 ALA B 55 REMARK 465 GLU B 56 REMARK 465 PRO B 57 REMARK 465 LEU B 58 REMARK 465 VAL B 59 REMARK 465 ALA B 60 REMARK 465 ARG B 61 REMARK 465 GLY B 62 REMARK 465 ALA B 63 REMARK 465 LYS B 64 REMARK 465 SER B 65 REMARK 465 SER B 307 REMARK 465 GLY B 308 REMARK 465 LYS B 309 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 ASP C 3 REMARK 465 ASN C 4 REMARK 465 PRO C 5 REMARK 465 SER C 6 REMARK 465 THR C 7 REMARK 465 LYS C 8 REMARK 465 GLY C 9 REMARK 465 ARG C 10 REMARK 465 MET C 11 REMARK 465 MET C 12 REMARK 465 ARG C 13 REMARK 465 ASN C 14 REMARK 465 GLN C 15 REMARK 465 GLN C 16 REMARK 465 ALA C 17 REMARK 465 GLU C 18 REMARK 465 ALA C 52 REMARK 465 ALA C 53 REMARK 465 LYS C 54 REMARK 465 ALA C 55 REMARK 465 GLU C 56 REMARK 465 PRO C 57 REMARK 465 LEU C 58 REMARK 465 VAL C 59 REMARK 465 ALA C 60 REMARK 465 ARG C 61 REMARK 465 GLY C 62 REMARK 465 ALA C 63 REMARK 465 LYS C 64 REMARK 465 SER C 65 REMARK 465 SER C 307 REMARK 465 GLY C 308 REMARK 465 LYS C 309 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 ASP D 3 REMARK 465 ASN D 4 REMARK 465 PRO D 5 REMARK 465 SER D 6 REMARK 465 THR D 7 REMARK 465 LYS D 8 REMARK 465 GLY D 9 REMARK 465 ALA D 53 REMARK 465 LYS D 54 REMARK 465 ALA D 55 REMARK 465 SER D 307 REMARK 465 GLY D 308 REMARK 465 LYS D 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 19 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 THR A 51 OG1 CG2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 HIS B 19 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 LEU B 39 CG CD1 CD2 REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 ASP B 97 CG OD1 OD2 REMARK 470 THR B 99 OG1 CG2 REMARK 470 GLN B 102 CG CD OE1 NE2 REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 HIS C 19 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 50 CG CD NE CZ NH1 NH2 REMARK 470 THR C 51 OG1 CG2 REMARK 470 GLU C 71 CG CD OE1 OE2 REMARK 470 ASP C 97 CG OD1 OD2 REMARK 470 GLY C 103 CA REMARK 470 ARG C 104 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 156 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 249 CG OD1 OD2 REMARK 470 GLU C 260 CG CD OE1 OE2 REMARK 470 ARG D 10 CG CD NE CZ NH1 NH2 REMARK 470 MET D 11 CG SD CE REMARK 470 GLN D 15 CG CD OE1 NE2 REMARK 470 GLN D 16 CG CD OE1 NE2 REMARK 470 GLU D 18 CG CD OE1 OE2 REMARK 470 ARG D 50 NE CZ NH1 NH2 REMARK 470 LYS D 64 CG CD CE NZ REMARK 470 GLN D 224 CG CD OE1 NE2 REMARK 470 ASP D 248 CG OD1 OD2 REMARK 470 GLU D 260 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 179 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 179 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP C 179 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP D 179 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 52 165.08 -48.61 REMARK 500 LEU A 137 54.74 -109.03 REMARK 500 ASP A 248 48.55 38.95 REMARK 500 ASN B 49 -152.99 -156.62 REMARK 500 LEU B 137 54.74 -109.35 REMARK 500 THR B 305 -167.26 -124.96 REMARK 500 ARG C 50 -70.19 -46.27 REMARK 500 LEU C 137 54.47 -109.20 REMARK 500 THR C 305 -166.30 -115.51 REMARK 500 LEU D 137 55.14 -109.29 REMARK 500 ASP D 249 -1.49 67.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 3ZGY A 1 309 UNP Q1EQE0 Q1EQE0_STRKN 1 309 DBREF 3ZGY B 1 309 UNP Q1EQE0 Q1EQE0_STRKN 1 309 DBREF 3ZGY C 1 309 UNP Q1EQE0 Q1EQE0_STRKN 1 309 DBREF 3ZGY D 1 309 UNP Q1EQE0 Q1EQE0_STRKN 1 309 SEQRES 1 A 309 MET PRO ASP ASN PRO SER THR LYS GLY ARG MET MET ARG SEQRES 2 A 309 ASN GLN GLN ALA GLU HIS THR PRO VAL THR VAL ILE GLY SEQRES 3 A 309 LEU GLY LEU MET GLY GLN ALA LEU ALA GLY ALA PHE LEU SEQRES 4 A 309 GLY ALA GLY HIS PRO THR THR VAL TRP ASN ARG THR ALA SEQRES 5 A 309 ALA LYS ALA GLU PRO LEU VAL ALA ARG GLY ALA LYS SER SEQRES 6 A 309 ALA GLY SER VAL ALA GLU ALA VAL ALA ALA SER PRO LEU SEQRES 7 A 309 VAL VAL VAL CYS VAL SER ASP TYR ASP ALA VAL HIS ALA SEQRES 8 A 309 LEU LEU ASP PRO LEU ASP GLY THR ALA LEU GLN GLY ARG SEQRES 9 A 309 THR LEU VAL ASN LEU THR SER GLY THR SER ALA GLN ALA SEQRES 10 A 309 ARG GLU ARG ALA ALA TRP ALA ASP GLY ARG GLY ALA ASP SEQRES 11 A 309 TYR LEU ASP GLY ALA ILE LEU ALA GLY PRO ALA ALA ILE SEQRES 12 A 309 GLY THR ALA ASP ALA VAL VAL LEU LEU SER GLY PRO ARG SEQRES 13 A 309 SER ALA PHE ASP PRO HIS ALA SER ALA LEU GLY GLY LEU SEQRES 14 A 309 GLY ALA GLY THR THR TYR LEU GLY ALA ASP HIS GLY LEU SEQRES 15 A 309 ALA SER LEU TYR ASP ALA ALA GLY LEU VAL MET MET TRP SEQRES 16 A 309 SER ILE LEU ASN GLY PHE LEU GLN GLY ALA ALA LEU LEU SEQRES 17 A 309 GLY THR ALA GLY VAL ASP ALA THR THR PHE ALA PRO PHE SEQRES 18 A 309 ILE THR GLN GLY ILE GLY THR VAL ALA ASP TRP LEU PRO SEQRES 19 A 309 GLY TYR ALA ARG GLN ILE ASP ASP GLY ALA TYR PRO ALA SEQRES 20 A 309 ASP ASP ALA ALA ILE ASP THR HIS LEU ALA THR MET GLU SEQRES 21 A 309 HIS LEU ILE HIS GLU SER GLU PHE LEU GLY VAL ASN ALA SEQRES 22 A 309 GLU LEU PRO ARG PHE ILE LYS ALA LEU ALA ASP ARG ALA SEQRES 23 A 309 VAL ALA ASP GLY HIS GLY GLY SER GLY TYR PRO ALA LEU SEQRES 24 A 309 ILE GLU GLN PHE ARG THR HIS SER GLY LYS SEQRES 1 B 309 MET PRO ASP ASN PRO SER THR LYS GLY ARG MET MET ARG SEQRES 2 B 309 ASN GLN GLN ALA GLU HIS THR PRO VAL THR VAL ILE GLY SEQRES 3 B 309 LEU GLY LEU MET GLY GLN ALA LEU ALA GLY ALA PHE LEU SEQRES 4 B 309 GLY ALA GLY HIS PRO THR THR VAL TRP ASN ARG THR ALA SEQRES 5 B 309 ALA LYS ALA GLU PRO LEU VAL ALA ARG GLY ALA LYS SER SEQRES 6 B 309 ALA GLY SER VAL ALA GLU ALA VAL ALA ALA SER PRO LEU SEQRES 7 B 309 VAL VAL VAL CYS VAL SER ASP TYR ASP ALA VAL HIS ALA SEQRES 8 B 309 LEU LEU ASP PRO LEU ASP GLY THR ALA LEU GLN GLY ARG SEQRES 9 B 309 THR LEU VAL ASN LEU THR SER GLY THR SER ALA GLN ALA SEQRES 10 B 309 ARG GLU ARG ALA ALA TRP ALA ASP GLY ARG GLY ALA ASP SEQRES 11 B 309 TYR LEU ASP GLY ALA ILE LEU ALA GLY PRO ALA ALA ILE SEQRES 12 B 309 GLY THR ALA ASP ALA VAL VAL LEU LEU SER GLY PRO ARG SEQRES 13 B 309 SER ALA PHE ASP PRO HIS ALA SER ALA LEU GLY GLY LEU SEQRES 14 B 309 GLY ALA GLY THR THR TYR LEU GLY ALA ASP HIS GLY LEU SEQRES 15 B 309 ALA SER LEU TYR ASP ALA ALA GLY LEU VAL MET MET TRP SEQRES 16 B 309 SER ILE LEU ASN GLY PHE LEU GLN GLY ALA ALA LEU LEU SEQRES 17 B 309 GLY THR ALA GLY VAL ASP ALA THR THR PHE ALA PRO PHE SEQRES 18 B 309 ILE THR GLN GLY ILE GLY THR VAL ALA ASP TRP LEU PRO SEQRES 19 B 309 GLY TYR ALA ARG GLN ILE ASP ASP GLY ALA TYR PRO ALA SEQRES 20 B 309 ASP ASP ALA ALA ILE ASP THR HIS LEU ALA THR MET GLU SEQRES 21 B 309 HIS LEU ILE HIS GLU SER GLU PHE LEU GLY VAL ASN ALA SEQRES 22 B 309 GLU LEU PRO ARG PHE ILE LYS ALA LEU ALA ASP ARG ALA SEQRES 23 B 309 VAL ALA ASP GLY HIS GLY GLY SER GLY TYR PRO ALA LEU SEQRES 24 B 309 ILE GLU GLN PHE ARG THR HIS SER GLY LYS SEQRES 1 C 309 MET PRO ASP ASN PRO SER THR LYS GLY ARG MET MET ARG SEQRES 2 C 309 ASN GLN GLN ALA GLU HIS THR PRO VAL THR VAL ILE GLY SEQRES 3 C 309 LEU GLY LEU MET GLY GLN ALA LEU ALA GLY ALA PHE LEU SEQRES 4 C 309 GLY ALA GLY HIS PRO THR THR VAL TRP ASN ARG THR ALA SEQRES 5 C 309 ALA LYS ALA GLU PRO LEU VAL ALA ARG GLY ALA LYS SER SEQRES 6 C 309 ALA GLY SER VAL ALA GLU ALA VAL ALA ALA SER PRO LEU SEQRES 7 C 309 VAL VAL VAL CYS VAL SER ASP TYR ASP ALA VAL HIS ALA SEQRES 8 C 309 LEU LEU ASP PRO LEU ASP GLY THR ALA LEU GLN GLY ARG SEQRES 9 C 309 THR LEU VAL ASN LEU THR SER GLY THR SER ALA GLN ALA SEQRES 10 C 309 ARG GLU ARG ALA ALA TRP ALA ASP GLY ARG GLY ALA ASP SEQRES 11 C 309 TYR LEU ASP GLY ALA ILE LEU ALA GLY PRO ALA ALA ILE SEQRES 12 C 309 GLY THR ALA ASP ALA VAL VAL LEU LEU SER GLY PRO ARG SEQRES 13 C 309 SER ALA PHE ASP PRO HIS ALA SER ALA LEU GLY GLY LEU SEQRES 14 C 309 GLY ALA GLY THR THR TYR LEU GLY ALA ASP HIS GLY LEU SEQRES 15 C 309 ALA SER LEU TYR ASP ALA ALA GLY LEU VAL MET MET TRP SEQRES 16 C 309 SER ILE LEU ASN GLY PHE LEU GLN GLY ALA ALA LEU LEU SEQRES 17 C 309 GLY THR ALA GLY VAL ASP ALA THR THR PHE ALA PRO PHE SEQRES 18 C 309 ILE THR GLN GLY ILE GLY THR VAL ALA ASP TRP LEU PRO SEQRES 19 C 309 GLY TYR ALA ARG GLN ILE ASP ASP GLY ALA TYR PRO ALA SEQRES 20 C 309 ASP ASP ALA ALA ILE ASP THR HIS LEU ALA THR MET GLU SEQRES 21 C 309 HIS LEU ILE HIS GLU SER GLU PHE LEU GLY VAL ASN ALA SEQRES 22 C 309 GLU LEU PRO ARG PHE ILE LYS ALA LEU ALA ASP ARG ALA SEQRES 23 C 309 VAL ALA ASP GLY HIS GLY GLY SER GLY TYR PRO ALA LEU SEQRES 24 C 309 ILE GLU GLN PHE ARG THR HIS SER GLY LYS SEQRES 1 D 309 MET PRO ASP ASN PRO SER THR LYS GLY ARG MET MET ARG SEQRES 2 D 309 ASN GLN GLN ALA GLU HIS THR PRO VAL THR VAL ILE GLY SEQRES 3 D 309 LEU GLY LEU MET GLY GLN ALA LEU ALA GLY ALA PHE LEU SEQRES 4 D 309 GLY ALA GLY HIS PRO THR THR VAL TRP ASN ARG THR ALA SEQRES 5 D 309 ALA LYS ALA GLU PRO LEU VAL ALA ARG GLY ALA LYS SER SEQRES 6 D 309 ALA GLY SER VAL ALA GLU ALA VAL ALA ALA SER PRO LEU SEQRES 7 D 309 VAL VAL VAL CYS VAL SER ASP TYR ASP ALA VAL HIS ALA SEQRES 8 D 309 LEU LEU ASP PRO LEU ASP GLY THR ALA LEU GLN GLY ARG SEQRES 9 D 309 THR LEU VAL ASN LEU THR SER GLY THR SER ALA GLN ALA SEQRES 10 D 309 ARG GLU ARG ALA ALA TRP ALA ASP GLY ARG GLY ALA ASP SEQRES 11 D 309 TYR LEU ASP GLY ALA ILE LEU ALA GLY PRO ALA ALA ILE SEQRES 12 D 309 GLY THR ALA ASP ALA VAL VAL LEU LEU SER GLY PRO ARG SEQRES 13 D 309 SER ALA PHE ASP PRO HIS ALA SER ALA LEU GLY GLY LEU SEQRES 14 D 309 GLY ALA GLY THR THR TYR LEU GLY ALA ASP HIS GLY LEU SEQRES 15 D 309 ALA SER LEU TYR ASP ALA ALA GLY LEU VAL MET MET TRP SEQRES 16 D 309 SER ILE LEU ASN GLY PHE LEU GLN GLY ALA ALA LEU LEU SEQRES 17 D 309 GLY THR ALA GLY VAL ASP ALA THR THR PHE ALA PRO PHE SEQRES 18 D 309 ILE THR GLN GLY ILE GLY THR VAL ALA ASP TRP LEU PRO SEQRES 19 D 309 GLY TYR ALA ARG GLN ILE ASP ASP GLY ALA TYR PRO ALA SEQRES 20 D 309 ASP ASP ALA ALA ILE ASP THR HIS LEU ALA THR MET GLU SEQRES 21 D 309 HIS LEU ILE HIS GLU SER GLU PHE LEU GLY VAL ASN ALA SEQRES 22 D 309 GLU LEU PRO ARG PHE ILE LYS ALA LEU ALA ASP ARG ALA SEQRES 23 D 309 VAL ALA ASP GLY HIS GLY GLY SER GLY TYR PRO ALA LEU SEQRES 24 D 309 ILE GLU GLN PHE ARG THR HIS SER GLY LYS FORMUL 5 HOH *107(H2 O) HELIX 1 1 GLY A 28 ALA A 41 1 14 HELIX 2 2 SER A 68 SER A 76 1 9 HELIX 3 3 ASP A 85 ASP A 94 1 10 HELIX 4 4 THR A 113 ARG A 127 1 15 HELIX 5 5 GLY A 139 ILE A 143 5 5 HELIX 6 6 PRO A 155 ASP A 160 1 6 HELIX 7 7 HIS A 162 GLY A 168 1 7 HELIX 8 8 GLY A 181 THR A 210 1 30 HELIX 9 9 ASP A 214 ASP A 231 1 18 HELIX 10 10 TRP A 232 ASP A 242 1 11 HELIX 11 11 ALA A 251 GLY A 270 1 20 HELIX 12 12 ALA A 273 ASP A 289 1 17 HELIX 13 13 GLY A 295 ALA A 298 5 4 HELIX 14 14 LEU A 299 THR A 305 1 7 HELIX 15 15 GLY B 28 ALA B 41 1 14 HELIX 16 16 SER B 68 SER B 76 1 9 HELIX 17 17 ASP B 85 ASP B 94 1 10 HELIX 18 18 THR B 113 ARG B 127 1 15 HELIX 19 19 GLY B 139 ILE B 143 5 5 HELIX 20 20 PRO B 155 ASP B 160 1 6 HELIX 21 21 HIS B 162 GLY B 168 1 7 HELIX 22 22 GLY B 181 THR B 210 1 30 HELIX 23 23 ASP B 214 ASP B 231 1 18 HELIX 24 24 TRP B 232 ASP B 242 1 11 HELIX 25 25 ALA B 251 LEU B 269 1 19 HELIX 26 26 ALA B 273 ASP B 289 1 17 HELIX 27 27 GLY B 295 ALA B 298 5 4 HELIX 28 28 LEU B 299 THR B 305 1 7 HELIX 29 29 GLY C 28 ALA C 41 1 14 HELIX 30 30 SER C 68 SER C 76 1 9 HELIX 31 31 ASP C 85 ASP C 94 1 10 HELIX 32 32 THR C 113 ARG C 127 1 15 HELIX 33 33 GLY C 139 ILE C 143 5 5 HELIX 34 34 PRO C 155 ASP C 160 1 6 HELIX 35 35 HIS C 162 GLY C 168 1 7 HELIX 36 36 GLY C 181 THR C 210 1 30 HELIX 37 37 ASP C 214 ASP C 231 1 18 HELIX 38 38 TRP C 232 ASP C 242 1 11 HELIX 39 39 ALA C 251 LEU C 269 1 19 HELIX 40 40 ALA C 273 ASP C 289 1 17 HELIX 41 41 GLY C 295 ALA C 298 5 4 HELIX 42 42 LEU C 299 THR C 305 1 7 HELIX 43 43 GLN D 16 THR D 20 5 5 HELIX 44 44 GLY D 28 ALA D 41 1 14 HELIX 45 45 GLU D 56 ARG D 61 1 6 HELIX 46 46 SER D 68 SER D 76 1 9 HELIX 47 47 ASP D 85 ASP D 94 1 10 HELIX 48 48 THR D 113 ARG D 127 1 15 HELIX 49 49 GLY D 139 ILE D 143 5 5 HELIX 50 50 PRO D 155 ASP D 160 1 6 HELIX 51 51 HIS D 162 GLY D 168 1 7 HELIX 52 52 GLY D 181 THR D 210 1 30 HELIX 53 53 ASP D 214 ASP D 231 1 18 HELIX 54 54 TRP D 232 ASP D 242 1 11 HELIX 55 55 ALA D 251 GLY D 270 1 20 HELIX 56 56 ALA D 273 ASP D 289 1 17 HELIX 57 57 GLY D 295 ALA D 298 5 4 HELIX 58 58 LEU D 299 THR D 305 1 7 SHEET 1 AA 8 LYS A 64 SER A 65 0 SHEET 2 AA 8 THR A 45 TRP A 48 1 O THR A 45 N LYS A 64 SHEET 3 AA 8 VAL A 22 ILE A 25 1 O VAL A 22 N THR A 46 SHEET 4 AA 8 LEU A 78 VAL A 81 1 O LEU A 78 N THR A 23 SHEET 5 AA 8 THR A 105 ASN A 108 1 O THR A 105 N VAL A 79 SHEET 6 AA 8 ASP A 130 ILE A 136 1 O ASP A 130 N LEU A 106 SHEET 7 AA 8 VAL A 150 SER A 153 -1 O LEU A 151 N ALA A 135 SHEET 8 AA 8 THR A 173 TYR A 175 1 O THR A 174 N LEU A 152 SHEET 1 BA 7 THR B 45 TRP B 48 0 SHEET 2 BA 7 VAL B 22 ILE B 25 1 O VAL B 22 N THR B 46 SHEET 3 BA 7 LEU B 78 VAL B 81 1 O LEU B 78 N THR B 23 SHEET 4 BA 7 THR B 105 ASN B 108 1 O THR B 105 N VAL B 79 SHEET 5 BA 7 ASP B 130 ILE B 136 1 O ASP B 130 N LEU B 106 SHEET 6 BA 7 VAL B 150 SER B 153 -1 O LEU B 151 N ALA B 135 SHEET 7 BA 7 THR B 173 TYR B 175 1 O THR B 174 N LEU B 152 SHEET 1 CA 7 THR C 45 TRP C 48 0 SHEET 2 CA 7 VAL C 22 ILE C 25 1 O VAL C 22 N THR C 46 SHEET 3 CA 7 LEU C 78 VAL C 81 1 O LEU C 78 N THR C 23 SHEET 4 CA 7 THR C 105 ASN C 108 1 O THR C 105 N VAL C 79 SHEET 5 CA 7 ASP C 130 ILE C 136 1 O ASP C 130 N LEU C 106 SHEET 6 CA 7 VAL C 150 SER C 153 -1 O LEU C 151 N ALA C 135 SHEET 7 CA 7 THR C 173 TYR C 175 1 O THR C 174 N LEU C 152 SHEET 1 DA 8 LYS D 64 SER D 65 0 SHEET 2 DA 8 THR D 45 TRP D 48 1 O THR D 45 N LYS D 64 SHEET 3 DA 8 VAL D 22 ILE D 25 1 O VAL D 22 N THR D 46 SHEET 4 DA 8 LEU D 78 VAL D 81 1 O LEU D 78 N THR D 23 SHEET 5 DA 8 THR D 105 ASN D 108 1 O THR D 105 N VAL D 79 SHEET 6 DA 8 ASP D 130 ILE D 136 1 O ASP D 130 N LEU D 106 SHEET 7 DA 8 VAL D 150 SER D 153 -1 O LEU D 151 N ALA D 135 SHEET 8 DA 8 THR D 173 TYR D 175 1 O THR D 174 N LEU D 152 CRYST1 203.410 131.110 77.480 90.00 107.22 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004916 0.000000 0.001524 0.00000 SCALE2 0.000000 0.007627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013512 0.00000