HEADER CELL ADHESION 20-DEC-12 3ZH7 TITLE THE STRUCTURE OF CRYSTAL FORM II OF HAEMOPHILUS INFLUENZAE PROTEIN E COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN E; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 9 ORGANISM_TAXID: 727; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR B.SINGH,T.AL-JUBAIR,K.RIESBECK,M.M.G.M.THUNNISSEN REVDAT 4 13-NOV-24 3ZH7 1 REMARK REVDAT 3 17-JAN-18 3ZH7 1 REMARK ATOM REVDAT 2 05-JUN-13 3ZH7 1 SEQADV MTRIX1 MTRIX2 MTRIX3 REVDAT 1 17-APR-13 3ZH7 0 JRNL AUTH B.SINGH,T.AL-JUBAIR,M.MORGELIN,M.M.THUNNISSEN,K.RIESBECK JRNL TITL THE UNIQUE STRUCTURE OF HAEMOPHILUS INFLUENZAE PROTEIN E JRNL TITL 2 REVEALS MULTIPLE BINDING SITES FOR HOST FACTORS. JRNL REF INFECT.IMMUN. V. 81 801 2013 JRNL REFN ISSN 0019-9567 JRNL PMID 23275089 JRNL DOI 10.1128/IAI.01111-12 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 13338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3003 - 3.5921 0.99 2671 145 0.1807 0.2338 REMARK 3 2 3.5921 - 2.8520 1.00 2626 139 0.1858 0.2544 REMARK 3 3 2.8520 - 2.4918 1.00 2590 138 0.2242 0.3008 REMARK 3 4 2.4918 - 2.2640 1.00 2619 124 0.2359 0.2578 REMARK 3 5 2.2640 - 2.1018 0.84 2161 125 0.2726 0.3279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 40.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03400 REMARK 3 B22 (A**2) : -6.96860 REMARK 3 B33 (A**2) : 8.00250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.62360 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2152 REMARK 3 ANGLE : 1.029 2923 REMARK 3 CHIRALITY : 0.057 316 REMARK 3 PLANARITY : 0.003 375 REMARK 3 DIHEDRAL : 13.474 793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 27:64) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0862 -2.5000 6.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.3503 T22: 0.3159 REMARK 3 T33: 0.4482 T12: -0.0348 REMARK 3 T13: -0.0424 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 6.4104 L22: 3.4241 REMARK 3 L33: 4.0684 L12: 0.3997 REMARK 3 L13: 2.2420 L23: 1.3740 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: 0.3259 S13: 0.5174 REMARK 3 S21: -0.1143 S22: 0.0095 S23: 0.7633 REMARK 3 S31: -0.2407 S32: -0.5885 S33: 0.1133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 65:129) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6743 -10.5562 13.3913 REMARK 3 T TENSOR REMARK 3 T11: 0.2595 T22: 0.2639 REMARK 3 T33: 0.3581 T12: -0.0038 REMARK 3 T13: -0.0179 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 8.4737 L22: 2.4050 REMARK 3 L33: 2.9266 L12: 0.8619 REMARK 3 L13: -2.2695 L23: -0.9597 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -0.1362 S13: -0.0784 REMARK 3 S21: 0.2436 S22: 0.2194 S23: 0.5566 REMARK 3 S31: 0.0446 S32: -0.4380 S33: -0.1214 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 130:153) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7354 -8.7562 -0.1201 REMARK 3 T TENSOR REMARK 3 T11: 0.3298 T22: 0.2866 REMARK 3 T33: 0.2780 T12: -0.0321 REMARK 3 T13: -0.0600 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.1808 L22: 7.3301 REMARK 3 L33: 6.8381 L12: -2.6705 REMARK 3 L13: 2.9374 L23: -0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: 0.3168 S13: -0.0061 REMARK 3 S21: -1.2289 S22: 0.0870 S23: 0.2126 REMARK 3 S31: -0.0553 S32: -0.0907 S33: -0.0689 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 26:64) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0471 -17.0547 31.8447 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.2616 REMARK 3 T33: 0.3733 T12: 0.0221 REMARK 3 T13: -0.0661 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.4360 L22: 3.0452 REMARK 3 L33: 7.5673 L12: -0.1048 REMARK 3 L13: 0.8441 L23: 1.0919 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: -0.6313 S13: 0.2186 REMARK 3 S21: 0.4424 S22: -0.0107 S23: -0.1069 REMARK 3 S31: 0.2000 S32: 0.1806 S33: -0.0767 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 65:89) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1021 -6.7023 35.9192 REMARK 3 T TENSOR REMARK 3 T11: 0.3507 T22: 0.4512 REMARK 3 T33: 0.3040 T12: 0.0838 REMARK 3 T13: 0.0696 T23: -0.1044 REMARK 3 L TENSOR REMARK 3 L11: 3.9899 L22: 4.1392 REMARK 3 L33: 3.5261 L12: -1.1885 REMARK 3 L13: -1.7404 L23: 1.0694 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: -0.9710 S13: 0.3576 REMARK 3 S21: 0.5454 S22: 0.0644 S23: 0.2654 REMARK 3 S31: -0.4062 S32: -0.3155 S33: 0.0146 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 90:133) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1978 -8.6807 26.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 0.2568 REMARK 3 T33: 0.2837 T12: 0.0182 REMARK 3 T13: -0.0727 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 3.3384 L22: 2.7394 REMARK 3 L33: 6.5521 L12: 0.1216 REMARK 3 L13: -2.2712 L23: -0.4436 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.1472 S13: 0.3235 REMARK 3 S21: 0.0480 S22: -0.0445 S23: 0.3156 REMARK 3 S31: -0.7537 S32: -0.2370 S33: 0.0069 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 134:156) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7708 -16.6022 24.4148 REMARK 3 T TENSOR REMARK 3 T11: 0.3415 T22: 0.3673 REMARK 3 T33: 0.3846 T12: 0.0282 REMARK 3 T13: -0.1447 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 8.9152 L22: 1.8230 REMARK 3 L33: 7.6046 L12: 2.9723 REMARK 3 L13: 0.3329 L23: 0.3564 REMARK 3 S TENSOR REMARK 3 S11: -0.2651 S12: 0.3155 S13: 0.0592 REMARK 3 S21: 0.0541 S22: 0.4139 S23: -0.0234 REMARK 3 S31: 0.3358 S32: 1.0141 S33: -0.3197 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12867 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 2.490 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 79.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STRUCTURE WAS SOLVED WITH STRUCTURE FROM OTHER CRYSTAL REMARK 200 FORM OF PE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BISTRIS PROPANE PH 6.5, 200 MM REMARK 280 NAI AND 20% W/V POLYETHYLENE GLYCOL 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.24500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 129 O HOH A 2020 1.30 REMARK 500 HG1 THR A 138 O HOH A 2022 1.56 REMARK 500 O HOH A 2007 O HOH B 2017 1.91 REMARK 500 O HOH B 2005 O HOH B 2007 1.91 REMARK 500 NZ LYS A 45 O THR A 138 1.95 REMARK 500 O ALA B 154 O HOH B 2022 2.02 REMARK 500 OG1 THR A 138 O HOH A 2022 2.07 REMARK 500 NZ LYS A 129 O HOH A 2020 2.13 REMARK 500 O HOH B 2003 O HOH B 2007 2.15 REMARK 500 OH TYR B 102 NE2 GLN B 145 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS B 128 HG3 GLN B 145 2656 1.13 REMARK 500 NH2 ARG A 89 OG SER B 38 2556 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 128 CE LYS B 128 NZ -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 128 CD - CE - NZ ANGL. DEV. = -21.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 65.08 -174.61 REMARK 500 TYR B 151 -57.00 -127.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZH5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HAEMOPHILUS INFLUENZAE PROTEIN E REMARK 900 RELATED ID: 3ZH6 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HAEMOPHILUS INFLUENZAE SE_MET FORM OF PROTEIN E DBREF 3ZH7 A 29 153 UNP C4F5U7 C4F5U7_HAEIF 29 153 DBREF 3ZH7 B 29 154 UNP C4F5U7 C4F5U7_HAEIF 29 154 SEQADV 3ZH7 ALA A 27 UNP C4F5U7 EXPRESSION TAG SEQADV 3ZH7 VAL A 28 UNP C4F5U7 EXPRESSION TAG SEQADV 3ZH7 ALA B 26 UNP C4F5U7 EXPRESSION TAG SEQADV 3ZH7 ALA B 27 UNP C4F5U7 EXPRESSION TAG SEQADV 3ZH7 VAL B 28 UNP C4F5U7 EXPRESSION TAG SEQADV 3ZH7 GLU B 153 UNP C4F5U7 LYS 153 CONFLICT SEQRES 1 A 127 ALA VAL LYS LEU ALA PRO PRO THR ASP VAL ARG SER GLY SEQRES 2 A 127 TYR ILE ARG LEU VAL LYS ASN VAL ASN TYR TYR ILE ASP SEQRES 3 A 127 SER GLU SER ILE TRP VAL ASP ASN GLN GLU PRO GLN ILE SEQRES 4 A 127 VAL HIS PHE ASP ALA VAL VAL ASN LEU ASP LYS GLY LEU SEQRES 5 A 127 TYR VAL TYR PRO GLU PRO LYS ARG TYR ALA ARG SER VAL SEQRES 6 A 127 ARG GLN TYR LYS ILE LEU ASN CYS ALA ASN TYR HIS LEU SEQRES 7 A 127 THR GLN VAL ARG THR ASP PHE TYR ASP GLU PHE TRP GLY SEQRES 8 A 127 GLN GLY LEU ARG ALA ALA PRO LYS LYS GLN LYS LYS HIS SEQRES 9 A 127 THR LEU SER LEU THR PRO ASP THR THR LEU TYR ASN ALA SEQRES 10 A 127 ALA GLN ILE ILE CYS ALA ASN TYR GLY LYS SEQRES 1 B 129 ALA ALA VAL LYS LEU ALA PRO PRO THR ASP VAL ARG SER SEQRES 2 B 129 GLY TYR ILE ARG LEU VAL LYS ASN VAL ASN TYR TYR ILE SEQRES 3 B 129 ASP SER GLU SER ILE TRP VAL ASP ASN GLN GLU PRO GLN SEQRES 4 B 129 ILE VAL HIS PHE ASP ALA VAL VAL ASN LEU ASP LYS GLY SEQRES 5 B 129 LEU TYR VAL TYR PRO GLU PRO LYS ARG TYR ALA ARG SER SEQRES 6 B 129 VAL ARG GLN TYR LYS ILE LEU ASN CYS ALA ASN TYR HIS SEQRES 7 B 129 LEU THR GLN VAL ARG THR ASP PHE TYR ASP GLU PHE TRP SEQRES 8 B 129 GLY GLN GLY LEU ARG ALA ALA PRO LYS LYS GLN LYS LYS SEQRES 9 B 129 HIS THR LEU SER LEU THR PRO ASP THR THR LEU TYR ASN SEQRES 10 B 129 ALA ALA GLN ILE ILE CYS ALA ASN TYR GLY GLU ALA HET EDO A1154 10 HET EDO B1155 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *47(H2 O) HELIX 1 1 THR A 138 GLY A 152 1 15 HELIX 2 2 GLU B 54 ILE B 56 5 3 HELIX 3 3 LEU B 140 TYR B 151 1 12 SHEET 1 AA 6 TYR A 40 LEU A 43 0 SHEET 2 AA 6 ASN A 46 VAL A 58 -1 N ASN A 46 O LEU A 43 SHEET 3 AA 6 ILE A 65 LEU A 78 -1 O HIS A 67 N TRP A 57 SHEET 4 AA 6 ALA A 88 ASN A 98 -1 O ALA A 88 N LEU A 78 SHEET 5 AA 6 HIS A 103 TYR A 112 -1 O HIS A 103 N ASN A 98 SHEET 6 AA 6 ARG A 121 ALA A 122 -1 O ALA A 122 N PHE A 111 SHEET 1 AB 6 TYR A 40 LEU A 43 0 SHEET 2 AB 6 ASN A 46 VAL A 58 -1 N ASN A 46 O LEU A 43 SHEET 3 AB 6 ILE A 65 LEU A 78 -1 O HIS A 67 N TRP A 57 SHEET 4 AB 6 ALA A 88 ASN A 98 -1 O ALA A 88 N LEU A 78 SHEET 5 AB 6 HIS A 103 TYR A 112 -1 O HIS A 103 N ASN A 98 SHEET 6 AB 6 HIS A 130 SER A 133 -1 O HIS A 130 N GLN A 106 SHEET 1 AC 2 ARG A 121 ALA A 122 0 SHEET 2 AC 2 HIS A 103 TYR A 112 -1 O PHE A 111 N ALA A 122 SHEET 1 BA 6 TYR B 40 ARG B 42 0 SHEET 2 BA 6 TYR B 49 ASP B 52 -1 O ILE B 51 N ILE B 41 SHEET 3 BA 6 ILE B 65 LEU B 78 -1 O ASP B 69 N ASP B 52 SHEET 4 BA 6 ALA B 88 ASN B 98 -1 O ALA B 88 N LEU B 78 SHEET 5 BA 6 HIS B 103 GLU B 114 -1 O HIS B 103 N ASN B 98 SHEET 6 BA 6 GLN B 118 ALA B 122 -1 O GLN B 118 N GLU B 114 SHEET 1 BB 4 TYR B 40 ARG B 42 0 SHEET 2 BB 4 TYR B 49 ASP B 52 -1 O ILE B 51 N ILE B 41 SHEET 3 BB 4 ILE B 65 LEU B 78 -1 O ASP B 69 N ASP B 52 SHEET 4 BB 4 TRP B 57 VAL B 58 1 O TRP B 57 N HIS B 67 SHEET 1 BC 2 GLN B 118 ALA B 122 0 SHEET 2 BC 2 HIS B 103 GLU B 114 -1 O PHE B 111 N ALA B 122 SHEET 1 BD 6 TYR B 40 ARG B 42 0 SHEET 2 BD 6 TYR B 49 ASP B 52 -1 O ILE B 51 N ILE B 41 SHEET 3 BD 6 ILE B 65 LEU B 78 -1 O ASP B 69 N ASP B 52 SHEET 4 BD 6 ALA B 88 ASN B 98 -1 O ALA B 88 N LEU B 78 SHEET 5 BD 6 HIS B 103 GLU B 114 -1 O HIS B 103 N ASN B 98 SHEET 6 BD 6 HIS B 130 SER B 133 -1 O HIS B 130 N GLN B 106 SSBOND 1 CYS A 99 CYS A 148 1555 1555 2.03 SSBOND 2 CYS B 99 CYS B 148 1555 1555 2.03 CISPEP 1 ALA B 26 ALA B 27 0 -6.69 SITE 1 AC1 5 LYS A 129 SER B 55 PHE B 68 ASP B 69 SITE 2 AC1 5 TYR B 94 SITE 1 AC2 6 LYS A 95 LEU A 104 GLN A 106 HIS A 130 SITE 2 AC2 6 LEU A 132 HOH A2025 CRYST1 54.670 42.490 56.800 90.00 116.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018292 0.000000 0.009044 0.00000 SCALE2 0.000000 0.023535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019640 0.00000 MTRIX1 1 0.282500 -0.229300 -0.931500 14.97170 1 MTRIX2 1 -0.199500 -0.963800 0.176800 -23.32830 1 MTRIX3 1 -0.938300 0.135900 -0.318000 26.05550 1