HEADER OXIDOREDUCTASE 11-JAN-13 3ZIV TITLE CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA- TITLE 2 EUKARYOTES COMMON ANCESTOR (AECA) FROM THE PRECAMBRIAN PERIOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: AECA THIOREDOXIN; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET30A PLUS KEYWDS OXIDOREDUCTASE, ANCESTRAL RECONSTRUCTED EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,A.INGLES-PRIETO,B.IBARRA-MOLERO,J.M.SANCHEZ-RUIZ REVDAT 5 23-OCT-24 3ZIV 1 REMARK REVDAT 4 20-DEC-23 3ZIV 1 REMARK REVDAT 3 06-MAR-19 3ZIV 1 REMARK REVDAT 2 25-SEP-13 3ZIV 1 JRNL REVDAT 1 21-AUG-13 3ZIV 0 JRNL AUTH A.INGLES-PRIETO,B.IBARRA-MOLERO,A.DELGADO-DELGADO, JRNL AUTH 2 R.PEREZ-JIMENEZ,J.M.FERNANDEZ,E.A.GAUCHER,J.M.SANCHEZ-RUIZ, JRNL AUTH 3 J.A.GAVIRA JRNL TITL CONSERVATION OF PROTEIN STRUCTURE OVER FOUR BILLION YEARS JRNL REF STRUCTURE V. 21 1690 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23932589 JRNL DOI 10.1016/J.STR.2013.06.020 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 9586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5191 - 3.8216 0.97 3075 140 0.1542 0.2321 REMARK 3 2 3.8216 - 3.0335 0.98 3060 155 0.2044 0.3128 REMARK 3 3 3.0335 - 2.6501 0.98 2991 165 0.2500 0.3524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2437 REMARK 3 ANGLE : 1.150 3324 REMARK 3 CHIRALITY : 0.076 390 REMARK 3 PLANARITY : 0.005 427 REMARK 3 DIHEDRAL : 14.650 855 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9190 2.3439 40.5515 REMARK 3 T TENSOR REMARK 3 T11: 1.0285 T22: 0.7232 REMARK 3 T33: 0.6293 T12: -0.3174 REMARK 3 T13: -0.1370 T23: -0.2239 REMARK 3 L TENSOR REMARK 3 L11: 6.1565 L22: 2.4960 REMARK 3 L33: 5.0485 L12: -0.3992 REMARK 3 L13: -3.0578 L23: -2.7504 REMARK 3 S TENSOR REMARK 3 S11: -0.2746 S12: -2.1023 S13: 1.7688 REMARK 3 S21: 0.6833 S22: -0.0458 S23: -0.6480 REMARK 3 S31: -2.4905 S32: 1.3878 S33: -0.2591 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 21 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8991 -8.4823 29.1953 REMARK 3 T TENSOR REMARK 3 T11: 0.4265 T22: 0.4585 REMARK 3 T33: 0.4813 T12: 0.1781 REMARK 3 T13: -0.0382 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 3.3597 L22: 1.7147 REMARK 3 L33: 3.0699 L12: -0.0648 REMARK 3 L13: -1.3115 L23: -0.3863 REMARK 3 S TENSOR REMARK 3 S11: 0.4923 S12: 1.0539 S13: 0.7411 REMARK 3 S21: -0.4677 S22: -0.4053 S23: -0.0709 REMARK 3 S31: 0.0905 S32: -0.2815 S33: -0.1081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3937 1.3587 37.6971 REMARK 3 T TENSOR REMARK 3 T11: 0.7548 T22: 1.0400 REMARK 3 T33: 0.4913 T12: 0.1230 REMARK 3 T13: 0.3215 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 4.7831 L22: 4.9328 REMARK 3 L33: 7.3656 L12: -1.8675 REMARK 3 L13: 1.1199 L23: -5.5238 REMARK 3 S TENSOR REMARK 3 S11: -0.3974 S12: 0.8677 S13: 0.1722 REMARK 3 S21: 0.2780 S22: -0.7619 S23: 1.2125 REMARK 3 S31: -0.7980 S32: -1.9501 S33: 1.1570 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 52 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6541 -9.2738 39.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.4603 T22: 0.6707 REMARK 3 T33: 0.3559 T12: -0.0014 REMARK 3 T13: -0.0068 T23: 0.0918 REMARK 3 L TENSOR REMARK 3 L11: 3.3921 L22: 3.0096 REMARK 3 L33: 6.7579 L12: -0.8405 REMARK 3 L13: -1.5843 L23: 2.2229 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: -0.5269 S13: 0.4231 REMARK 3 S21: 0.5272 S22: 0.1031 S23: -0.1577 REMARK 3 S31: 0.5745 S32: 1.6569 S33: -0.0749 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 94 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7813 -9.7387 39.3050 REMARK 3 T TENSOR REMARK 3 T11: 0.5760 T22: 1.0324 REMARK 3 T33: 0.6261 T12: -0.2861 REMARK 3 T13: 0.0161 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 4.5085 L22: 5.1469 REMARK 3 L33: 9.5169 L12: -0.8509 REMARK 3 L13: 0.6458 L23: 1.3674 REMARK 3 S TENSOR REMARK 3 S11: 0.9395 S12: -0.4649 S13: 0.1748 REMARK 3 S21: 0.5902 S22: -0.1683 S23: 0.5719 REMARK 3 S31: -0.2117 S32: -0.2291 S33: -1.3129 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5434 -35.1204 30.2139 REMARK 3 T TENSOR REMARK 3 T11: 1.2096 T22: 0.5882 REMARK 3 T33: 1.0002 T12: 0.0912 REMARK 3 T13: 0.0916 T23: 0.1590 REMARK 3 L TENSOR REMARK 3 L11: 2.0706 L22: 8.3931 REMARK 3 L33: 6.9506 L12: -2.2408 REMARK 3 L13: -0.9860 L23: 0.4737 REMARK 3 S TENSOR REMARK 3 S11: -0.1503 S12: -0.9407 S13: -0.4024 REMARK 3 S21: 0.1548 S22: -0.9050 S23: -0.7741 REMARK 3 S31: 1.5054 S32: 0.5240 S33: 0.9679 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 10 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7379 -33.6760 22.2873 REMARK 3 T TENSOR REMARK 3 T11: 1.0503 T22: 0.6765 REMARK 3 T33: 0.8162 T12: 0.4119 REMARK 3 T13: 0.0280 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.6471 L22: 0.6738 REMARK 3 L33: 0.3945 L12: 0.3658 REMARK 3 L13: 0.3307 L23: 0.5106 REMARK 3 S TENSOR REMARK 3 S11: 0.3966 S12: 0.2791 S13: -1.0861 REMARK 3 S21: -0.8918 S22: -0.3141 S23: 0.1372 REMARK 3 S31: 1.4373 S32: 0.6827 S33: 0.1342 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 27 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1602 -19.2701 32.8512 REMARK 3 T TENSOR REMARK 3 T11: 0.5712 T22: 0.4696 REMARK 3 T33: 0.6297 T12: 0.4464 REMARK 3 T13: -0.0119 T23: -0.0938 REMARK 3 L TENSOR REMARK 3 L11: 4.0368 L22: 3.3370 REMARK 3 L33: 5.2586 L12: 0.4480 REMARK 3 L13: -0.1779 L23: -0.0409 REMARK 3 S TENSOR REMARK 3 S11: -0.4431 S12: -0.2782 S13: -0.8145 REMARK 3 S21: 0.2408 S22: -0.1836 S23: 0.2455 REMARK 3 S31: -0.0429 S32: -0.2826 S33: 0.3495 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 32 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4301 -28.3835 23.5991 REMARK 3 T TENSOR REMARK 3 T11: 0.7549 T22: 0.5312 REMARK 3 T33: 0.6105 T12: -0.2260 REMARK 3 T13: -0.0666 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 5.2727 L22: 2.6283 REMARK 3 L33: 2.4011 L12: 3.6489 REMARK 3 L13: 3.3183 L23: 2.1197 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.0424 S13: -0.4057 REMARK 3 S21: 1.3735 S22: -0.0893 S23: 1.5868 REMARK 3 S31: 1.4066 S32: -0.7358 S33: 0.5007 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 47 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6372 -34.7747 21.5808 REMARK 3 T TENSOR REMARK 3 T11: 1.1142 T22: 0.0464 REMARK 3 T33: 0.8688 T12: 0.2587 REMARK 3 T13: -0.2564 T23: -0.0930 REMARK 3 L TENSOR REMARK 3 L11: 2.3543 L22: 4.3189 REMARK 3 L33: 5.7044 L12: 1.1041 REMARK 3 L13: 0.7115 L23: 4.2489 REMARK 3 S TENSOR REMARK 3 S11: -0.1503 S12: 0.1207 S13: -0.9464 REMARK 3 S21: -0.9796 S22: 0.1204 S23: 0.1306 REMARK 3 S31: 0.4512 S32: -0.1632 S33: -0.0563 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 58 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2060 -25.8606 19.1123 REMARK 3 T TENSOR REMARK 3 T11: 0.4667 T22: 0.6302 REMARK 3 T33: 0.4661 T12: 0.0767 REMARK 3 T13: 0.0812 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 4.1813 L22: 3.3932 REMARK 3 L33: 3.3722 L12: 1.0645 REMARK 3 L13: 1.4232 L23: -0.7043 REMARK 3 S TENSOR REMARK 3 S11: -0.1912 S12: 0.9060 S13: -0.6396 REMARK 3 S21: -0.3659 S22: 0.2676 S23: -0.2774 REMARK 3 S31: 0.4526 S32: 0.6009 S33: 0.0214 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN C AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5791 -5.8595 8.6028 REMARK 3 T TENSOR REMARK 3 T11: 0.7580 T22: 1.1548 REMARK 3 T33: 0.6736 T12: 0.2815 REMARK 3 T13: -0.0578 T23: 0.1838 REMARK 3 L TENSOR REMARK 3 L11: 3.5737 L22: 3.2462 REMARK 3 L33: 5.4090 L12: 0.6624 REMARK 3 L13: -1.3597 L23: 0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.2848 S12: 0.3752 S13: 0.3073 REMARK 3 S21: -0.7254 S22: -0.3519 S23: -0.2509 REMARK 3 S31: -1.6334 S32: -1.3537 S33: -0.1368 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN C AND (RESID 27 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7418 -14.9256 7.3808 REMARK 3 T TENSOR REMARK 3 T11: 0.4884 T22: 1.2317 REMARK 3 T33: 0.5792 T12: 0.0682 REMARK 3 T13: -0.0683 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 2.8695 L22: 3.8379 REMARK 3 L33: 0.7183 L12: -0.5132 REMARK 3 L13: 0.4456 L23: -0.6790 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 1.7360 S13: -0.3404 REMARK 3 S21: -0.8323 S22: -0.2088 S23: 0.8552 REMARK 3 S31: -0.3947 S32: -1.2096 S33: -0.0225 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN C AND (RESID 75 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2751 -12.3586 15.5423 REMARK 3 T TENSOR REMARK 3 T11: 0.5603 T22: 1.1988 REMARK 3 T33: 0.5658 T12: 0.1368 REMARK 3 T13: 0.0697 T23: 0.2637 REMARK 3 L TENSOR REMARK 3 L11: 5.0771 L22: 4.4529 REMARK 3 L33: 4.0302 L12: -2.3507 REMARK 3 L13: 1.5250 L23: -2.4893 REMARK 3 S TENSOR REMARK 3 S11: 0.2349 S12: -0.0938 S13: -0.4244 REMARK 3 S21: 1.2229 S22: -0.2492 S23: 1.1101 REMARK 3 S31: -0.5402 S32: -1.5293 S33: -0.0923 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN C AND (RESID 94 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9204 -11.6401 11.7204 REMARK 3 T TENSOR REMARK 3 T11: 0.6508 T22: 1.3741 REMARK 3 T33: 1.0523 T12: 0.1251 REMARK 3 T13: 0.0410 T23: 0.2769 REMARK 3 L TENSOR REMARK 3 L11: 1.5738 L22: 3.3268 REMARK 3 L33: 3.0550 L12: -0.1891 REMARK 3 L13: 0.6041 L23: -1.8919 REMARK 3 S TENSOR REMARK 3 S11: -0.2113 S12: -0.1687 S13: -0.4184 REMARK 3 S21: 0.0280 S22: 0.5454 S23: 0.7937 REMARK 3 S31: -0.2080 S32: -0.3808 S33: -0.5097 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290054812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YNX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COUNTER DIFFUSION, 25% PEG1500, PH REMARK 280 9.0, 277K, PH 7, COUNTER-DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 15 CE NZ REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 50 CD CE NZ REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 MET A 71 SD CE REMARK 470 LYS A 103 CD CE NZ REMARK 470 LEU A 105 O REMARK 470 ASP B 11 CG OD1 OD2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LYS B 16 CE NZ REMARK 470 ASP B 18 CG OD1 OD2 REMARK 470 LYS B 19 CD CE NZ REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 LYS B 50 CD CE NZ REMARK 470 LYS B 80 CD CE NZ REMARK 470 LYS B 83 CD CE NZ REMARK 470 LYS B 102 CE NZ REMARK 470 LYS B 103 CD CE NZ REMARK 470 LEU B 105 O REMARK 470 GLU C 8 CG CD OE1 OE2 REMARK 470 ASP C 11 CG OD1 OD2 REMARK 470 GLU C 12 CD OE1 OE2 REMARK 470 LYS C 15 CE NZ REMARK 470 LYS C 16 CG CD CE NZ REMARK 470 SER C 17 OG REMARK 470 ASP C 18 CG OD1 OD2 REMARK 470 LYS C 19 CD CE NZ REMARK 470 GLU C 28 CD OE1 OE2 REMARK 470 MET C 35 SD CE REMARK 470 LEU C 43 CD1 CD2 REMARK 470 GLU C 45 CG CD OE1 OE2 REMARK 470 GLU C 46 CD OE1 OE2 REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 LYS C 55 CD CE NZ REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 LYS C 80 CG CD CE NZ REMARK 470 LYS C 83 CD CE NZ REMARK 470 LYS C 94 CD CE NZ REMARK 470 GLU C 95 CG CD OE1 OE2 REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 LYS C 102 CG CD CE NZ REMARK 470 LYS C 103 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 6 ND2 ASN A 61 2.14 REMARK 500 O VAL A 51 O HOH A 2003 2.16 REMARK 500 O HOH A 2001 O HOH A 2002 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 2 99.54 -67.91 REMARK 500 ALA A 48 77.77 -67.09 REMARK 500 PRO A 93 141.24 -38.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HYPERSTABLE PROTEIN FROM THE PRECAMBRIAN REMARK 900 PERIOD REMARK 900 RELATED ID: 2YN1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST GAMMA- REMARK 900 PROTEOBACTERIA COMMON ANCESTOR (LGPCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YNX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ARCHAEA REMARK 900 COMMON ANCESTOR (LACA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YOI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST REMARK 900 EUKARYOTES COMMON ANCESTOR (LECA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 2YPM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST ANIMAL REMARK 900 AND FUNGI COMMON ANCESTOR (LAFCA) FROM THE PRECAMBRIAN PERIOD REMARK 900 RELATED ID: 4BA7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANCESTRAL THIOREDOXIN RELATIVE TO LAST REMARK 900 BACTERIA COMMON ANCESTOR (LBCA) FROM THE PRECAMBRIAN PERIOD DBREF 3ZIV A 0 105 PDB 3ZIV 3ZIV 0 105 DBREF 3ZIV B 0 105 PDB 3ZIV 3ZIV 0 105 DBREF 3ZIV C 0 105 PDB 3ZIV 3ZIV 0 105 SEQRES 1 A 106 MET SER VAL ILE GLU ILE ASN ASP GLU ASN PHE ASP GLU SEQRES 2 A 106 VAL ILE LYS LYS SER ASP LYS VAL VAL VAL VAL ASP PHE SEQRES 3 A 106 TRP ALA GLU TRP CYS GLY PRO CYS ARG MET ILE ALA PRO SEQRES 4 A 106 ILE ILE GLU GLU LEU ALA GLU GLU TYR ALA GLY LYS VAL SEQRES 5 A 106 VAL PHE GLY LYS VAL ASN VAL ASP GLU ASN PRO GLU ILE SEQRES 6 A 106 ALA ALA LYS TYR GLY ILE MET SER ILE PRO THR LEU LEU SEQRES 7 A 106 PHE PHE LYS ASN GLY LYS VAL VAL ASP GLN LEU VAL GLY SEQRES 8 A 106 ALA ARG PRO LYS GLU ALA LEU LYS GLU ARG ILE LYS LYS SEQRES 9 A 106 TYR LEU SEQRES 1 B 106 MET SER VAL ILE GLU ILE ASN ASP GLU ASN PHE ASP GLU SEQRES 2 B 106 VAL ILE LYS LYS SER ASP LYS VAL VAL VAL VAL ASP PHE SEQRES 3 B 106 TRP ALA GLU TRP CYS GLY PRO CYS ARG MET ILE ALA PRO SEQRES 4 B 106 ILE ILE GLU GLU LEU ALA GLU GLU TYR ALA GLY LYS VAL SEQRES 5 B 106 VAL PHE GLY LYS VAL ASN VAL ASP GLU ASN PRO GLU ILE SEQRES 6 B 106 ALA ALA LYS TYR GLY ILE MET SER ILE PRO THR LEU LEU SEQRES 7 B 106 PHE PHE LYS ASN GLY LYS VAL VAL ASP GLN LEU VAL GLY SEQRES 8 B 106 ALA ARG PRO LYS GLU ALA LEU LYS GLU ARG ILE LYS LYS SEQRES 9 B 106 TYR LEU SEQRES 1 C 106 MET SER VAL ILE GLU ILE ASN ASP GLU ASN PHE ASP GLU SEQRES 2 C 106 VAL ILE LYS LYS SER ASP LYS VAL VAL VAL VAL ASP PHE SEQRES 3 C 106 TRP ALA GLU TRP CYS GLY PRO CYS ARG MET ILE ALA PRO SEQRES 4 C 106 ILE ILE GLU GLU LEU ALA GLU GLU TYR ALA GLY LYS VAL SEQRES 5 C 106 VAL PHE GLY LYS VAL ASN VAL ASP GLU ASN PRO GLU ILE SEQRES 6 C 106 ALA ALA LYS TYR GLY ILE MET SER ILE PRO THR LEU LEU SEQRES 7 C 106 PHE PHE LYS ASN GLY LYS VAL VAL ASP GLN LEU VAL GLY SEQRES 8 C 106 ALA ARG PRO LYS GLU ALA LEU LYS GLU ARG ILE LYS LYS SEQRES 9 C 106 TYR LEU FORMUL 4 HOH *8(H2 O) HELIX 1 1 ASN A 9 LYS A 15 1 7 HELIX 2 2 CYS A 30 TYR A 47 1 18 HELIX 3 3 ASN A 61 TYR A 68 1 8 HELIX 4 4 PRO A 93 LYS A 102 1 10 HELIX 5 5 ASN B 9 LYS B 15 1 7 HELIX 6 6 PRO B 32 TYR B 47 1 16 HELIX 7 7 ASN B 61 TYR B 68 1 8 HELIX 8 8 PRO B 93 LYS B 103 1 11 HELIX 9 9 ASN C 9 SER C 17 1 9 HELIX 10 10 CYS C 30 TYR C 47 1 18 HELIX 11 11 ASN C 61 TYR C 68 1 8 HELIX 12 12 PRO C 93 LYS C 103 1 11 SHEET 1 AA 5 ILE A 3 GLU A 4 0 SHEET 2 AA 5 VAL A 52 ASN A 57 1 O PHE A 53 N ILE A 3 SHEET 3 AA 5 VAL A 21 TRP A 26 1 O VAL A 22 N GLY A 54 SHEET 4 AA 5 THR A 75 LYS A 80 -1 O THR A 75 N PHE A 25 SHEET 5 AA 5 LYS A 83 VAL A 89 -1 O LYS A 83 N LYS A 80 SHEET 1 BA 5 ILE B 3 GLU B 4 0 SHEET 2 BA 5 VAL B 52 ASN B 57 1 O PHE B 53 N ILE B 3 SHEET 3 BA 5 VAL B 21 TRP B 26 1 O VAL B 22 N GLY B 54 SHEET 4 BA 5 THR B 75 LYS B 80 -1 O THR B 75 N PHE B 25 SHEET 5 BA 5 LYS B 83 VAL B 89 -1 O LYS B 83 N LYS B 80 SHEET 1 CA 5 VAL C 2 ILE C 5 0 SHEET 2 CA 5 VAL C 51 ASN C 57 1 O PHE C 53 N ILE C 3 SHEET 3 CA 5 VAL C 20 TRP C 26 1 O VAL C 20 N VAL C 52 SHEET 4 CA 5 THR C 75 LYS C 80 -1 O THR C 75 N PHE C 25 SHEET 5 CA 5 LYS C 83 VAL C 89 -1 O LYS C 83 N LYS C 80 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.03 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.08 SSBOND 3 CYS C 30 CYS C 33 1555 1555 2.05 CISPEP 1 ILE A 73 PRO A 74 0 4.77 CISPEP 2 ILE B 73 PRO B 74 0 2.30 CISPEP 3 ILE C 73 PRO C 74 0 6.26 CRYST1 37.650 48.850 91.170 90.00 93.23 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026560 0.000000 0.001499 0.00000 SCALE2 0.000000 0.020471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010986 0.00000