HEADER HYDROLASE 25-JAN-13 3ZKX TITLE TERNARY BACE2 XAPERONE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR, RESIDUES 75-460; COMPND 5 SYNONYM: ASPARTIC-LIKE PROTEASE 56 KDA, ASPARTYL PROTEASE 1, ASP1, COMPND 6 ASP 1, BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 2, BETA- COMPND 7 SITE APP CLEAVING ENZYME 2, DOWN REGION ASPARTIC PROTEASE, DRAP, COMPND 8 MEMAPSIN-1, MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1, THETA-SECRETASE, COMPND 9 BACE2; COMPND 10 EC: 3.4.23.45; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: XA4813; COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: XA4815; COMPND 19 CHAIN: C; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_COMMON: LLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PMESY4; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 18 ORGANISM_COMMON: LLAMA; SOURCE 19 ORGANISM_TAXID: 9844; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PMESY4 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUGLSTATTER,D.W.BANNER,J.BENZ,J.BERTSCHINGER,D.BURGER,S.CUPPULERI, AUTHOR 2 M.DEBULPAEP,A.GAST,D.GRABULOVSKI,B.GSELL,H.HILPERT,W.HUBER, AUTHOR 3 E.KUSZNIR,T.LAEREMANS,H.MATILE,A.RUFER,D.SCHLATTER,J.STEYEART, AUTHOR 4 M.STIHLE,R.THOMA,M.WEBER,A.RUF REVDAT 3 20-DEC-23 3ZKX 1 REMARK REVDAT 2 05-JUN-13 3ZKX 1 JRNL REVDAT 1 29-MAY-13 3ZKX 0 JRNL AUTH D.W.BANNER,B.GSELL,J.BENZ,J.BERTSCHINGER,D.BURGER,S.BRACK, JRNL AUTH 2 S.CUPPULERI,M.DEBULPAEP,A.GAST,D.GRABULOVSKI,M.HENNIG, JRNL AUTH 3 H.HILPERT,W.HUBER,A.KUGLSTATTER,E.KUSZNIR,T.LAEREMANS, JRNL AUTH 4 H.MATILE,C.MISCENIC,A.RUFER,D.SCHLATTER,J.STEYEART,M.STIHLE, JRNL AUTH 5 R.THOMA,M.WEBER,A.RUF JRNL TITL MAPPING THE CONFORMATIONAL SPACE ACCESSIBLE TO BACE2 USING JRNL TITL 2 SURFACE MUTANTS AND CO-CRYSTALS WITH FAB-FRAGMENTS, JRNL TITL 3 FYNOMERS, AND XAPERONES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1124 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23695257 JRNL DOI 10.1107/S0907444913006574 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 49387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2502 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3565 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2684 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3382 REMARK 3 BIN R VALUE (WORKING SET) : 0.2682 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 183 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4541 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.94820 REMARK 3 B22 (A**2) : -15.40950 REMARK 3 B33 (A**2) : 5.46130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.359 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.181 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.156 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.176 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.155 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4651 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6313 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1547 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 101 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 689 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4651 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 605 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5028 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -24.5760 -24.1114 34.8618 REMARK 3 T TENSOR REMARK 3 T11: -0.0178 T22: -0.0378 REMARK 3 T33: -0.0609 T12: 0.0096 REMARK 3 T13: 0.0370 T23: 0.1858 REMARK 3 L TENSOR REMARK 3 L11: 0.8988 L22: 0.6146 REMARK 3 L33: 2.1618 L12: -0.4493 REMARK 3 L13: 1.0925 L23: -0.7424 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.1349 S13: -0.1532 REMARK 3 S21: -0.0517 S22: -0.0324 S23: -0.1111 REMARK 3 S31: -0.0866 S32: 0.1647 S33: 0.0701 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -16.5003 -39.1687 66.7277 REMARK 3 T TENSOR REMARK 3 T11: -0.1724 T22: 0.0975 REMARK 3 T33: -0.0474 T12: 0.0154 REMARK 3 T13: -0.0186 T23: 0.3014 REMARK 3 L TENSOR REMARK 3 L11: 3.1443 L22: 2.2400 REMARK 3 L33: 3.5588 L12: -1.1742 REMARK 3 L13: -0.1023 L23: -1.4181 REMARK 3 S TENSOR REMARK 3 S11: -0.0861 S12: 0.0406 S13: -0.0938 REMARK 3 S21: 0.1538 S22: 0.1050 S23: 0.0990 REMARK 3 S31: -0.0491 S32: -0.1575 S33: -0.0189 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -12.6534 -11.5714 -7.8228 REMARK 3 T TENSOR REMARK 3 T11: -0.0089 T22: -0.1296 REMARK 3 T33: -0.1125 T12: -0.0011 REMARK 3 T13: -0.0220 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 4.4718 L22: 3.9115 REMARK 3 L33: 2.9267 L12: 1.0763 REMARK 3 L13: -1.0305 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.1364 S12: -0.2594 S13: -0.2559 REMARK 3 S21: 0.1384 S22: 0.0272 S23: -0.3259 REMARK 3 S31: -0.0478 S32: 0.3868 S33: 0.1093 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 34.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZKQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE, 20% PEG3350, PH REMARK 280 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.68350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.91450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 123.58900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.68350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.91450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 123.58900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.68350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.91450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.58900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.68350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.91450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.58900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 PHE A 15 REMARK 465 PRO A 176 REMARK 465 VAL A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ASN A 183 REMARK 465 MET A 323 REMARK 465 GLY A 324 REMARK 465 ALA A 325 REMARK 465 GLY A 326 REMARK 465 ALA A 398 REMARK 465 SER B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 GLU B 278 REMARK 465 PRO B 279 REMARK 465 GLU B 280 REMARK 465 ALA B 281 REMARK 465 GLN C 160 REMARK 465 VAL C 161 REMARK 465 GLN C 162 REMARK 465 HIS C 274 REMARK 465 HIS C 275 REMARK 465 HIS C 276 REMARK 465 HIS C 277 REMARK 465 GLU C 278 REMARK 465 PRO C 279 REMARK 465 GLU C 280 REMARK 465 ALA C 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 210 -80.01 -142.82 REMARK 500 ASN A 285 -146.26 64.77 REMARK 500 VAL B 207 -61.04 -105.10 REMARK 500 GLU C 201 -48.88 77.71 REMARK 500 ASN C 258 76.22 9.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2056 DISTANCE = 8.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1272 DBREF 3ZKX A 13 398 UNP Q9Y5Z0 BACE2_HUMAN 75 460 DBREF 3ZKX B 160 281 PDB 3ZKX 3ZKX 160 281 DBREF 3ZKX C 160 281 PDB 3ZKX 3ZKX 160 281 SEQADV 3ZKX ALA A 269 UNP Q9Y5Z0 GLU 1195 ENGINEERED MUTATION SEQRES 1 A 386 ALA ASN PHE LEU ALA MET VAL ASP ASN LEU GLN GLY ASP SEQRES 2 A 386 SER GLY ARG GLY TYR TYR LEU GLU MET LEU ILE GLY THR SEQRES 3 A 386 PRO PRO GLN LYS LEU GLN ILE LEU VAL ASP THR GLY SER SEQRES 4 A 386 SER ASN PHE ALA VAL ALA GLY THR PRO HIS SER TYR ILE SEQRES 5 A 386 ASP THR TYR PHE ASP THR GLU ARG SER SER THR TYR ARG SEQRES 6 A 386 SER LYS GLY PHE ASP VAL THR VAL LYS TYR THR GLN GLY SEQRES 7 A 386 SER TRP THR GLY PHE VAL GLY GLU ASP LEU VAL THR ILE SEQRES 8 A 386 PRO LYS GLY PHE ASN THR SER PHE LEU VAL ASN ILE ALA SEQRES 9 A 386 THR ILE PHE GLU SER GLU ASN PHE PHE LEU PRO GLY ILE SEQRES 10 A 386 LYS TRP ASN GLY ILE LEU GLY LEU ALA TYR ALA THR LEU SEQRES 11 A 386 ALA LYS PRO SER SER SER LEU GLU THR PHE PHE ASP SER SEQRES 12 A 386 LEU VAL THR GLN ALA ASN ILE PRO ASN VAL PHE SER MET SEQRES 13 A 386 GLN MET CYS GLY ALA GLY LEU PRO VAL ALA GLY SER GLY SEQRES 14 A 386 THR ASN GLY GLY SER LEU VAL LEU GLY GLY ILE GLU PRO SEQRES 15 A 386 SER LEU TYR LYS GLY ASP ILE TRP TYR THR PRO ILE LYS SEQRES 16 A 386 GLU GLU TRP TYR TYR GLN ILE GLU ILE LEU LYS LEU GLU SEQRES 17 A 386 ILE GLY GLY GLN SER LEU ASN LEU ASP CYS ARG GLU TYR SEQRES 18 A 386 ASN ALA ASP LYS ALA ILE VAL ASP SER GLY THR THR LEU SEQRES 19 A 386 LEU ARG LEU PRO GLN LYS VAL PHE ASP ALA VAL VAL GLU SEQRES 20 A 386 ALA VAL ALA ARG ALA SER LEU ILE PRO ALA PHE SER ASP SEQRES 21 A 386 GLY PHE TRP THR GLY SER GLN LEU ALA CYS TRP THR ASN SEQRES 22 A 386 SER GLU THR PRO TRP SER TYR PHE PRO LYS ILE SER ILE SEQRES 23 A 386 TYR LEU ARG ASP GLU ASN SER SER ARG SER PHE ARG ILE SEQRES 24 A 386 THR ILE LEU PRO GLN LEU TYR ILE GLN PRO MET MET GLY SEQRES 25 A 386 ALA GLY LEU ASN TYR GLU CYS TYR ARG PHE GLY ILE SER SEQRES 26 A 386 PRO SER THR ASN ALA LEU VAL ILE GLY ALA THR VAL MET SEQRES 27 A 386 GLU GLY PHE TYR VAL ILE PHE ASP ARG ALA GLN LYS ARG SEQRES 28 A 386 VAL GLY PHE ALA ALA SER PRO CYS ALA GLU ILE ALA GLY SEQRES 29 A 386 ALA ALA VAL SER GLU ILE SER GLY PRO PHE SER THR GLU SEQRES 30 A 386 ASP VAL ALA SER ASN CYS VAL PRO ALA SEQRES 1 B 122 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 122 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 122 PHE THR PHE SER SER ALA ILE MET THR TRP VAL ARG GLN SEQRES 4 B 122 ALA PRO GLY LYS GLY ARG GLU TRP VAL SER THR ILE GLY SEQRES 5 B 122 SER ASP GLY SER ILE THR THR TYR ALA ASP SER VAL LYS SEQRES 6 B 122 GLY ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN THR SEQRES 7 B 122 LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 122 ALA VAL TYR TYR CYS THR SER ALA GLY ARG ARG GLY PRO SEQRES 9 B 122 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 10 B 122 HIS GLU PRO GLU ALA SEQRES 1 C 122 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 122 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 122 PHE THR PHE SER ARG ALA ALA MET ARG TRP VAL ARG ARG SEQRES 4 C 122 ALA PRO GLU ARG GLY LEU GLU TRP VAL ALA ASN ILE ASN SEQRES 5 C 122 ALA GLY ASP GLY SER ALA SER TYR ALA ASP PHE VAL LYS SEQRES 6 C 122 GLY ARG PHE THR ALA SER ARG ASP LYS ALA GLY ASN ARG SEQRES 7 C 122 LEU TYR LEU GLN MET ASP ASN LEU ARG PRO ASN ASP THR SEQRES 8 C 122 ALA VAL TYR TYR CYS ILE TYR ASN GLY HIS ARG GLY GLN SEQRES 9 C 122 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 10 C 122 HIS GLU PRO GLU ALA HET CL B1271 1 HET DMS B1272 4 HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 4 CL CL 1- FORMUL 5 DMS C2 H6 O S FORMUL 6 HOH *311(H2 O) HELIX 1 1 ASP A 69 SER A 73 5 5 HELIX 2 2 TYR A 139 ALA A 143 5 5 HELIX 3 3 THR A 151 ASN A 161 1 11 HELIX 4 4 GLU A 193 TYR A 197 5 5 HELIX 5 5 ASP A 229 ALA A 235 5 7 HELIX 6 6 GLN A 251 SER A 265 1 15 HELIX 7 7 SER A 271 THR A 276 1 6 HELIX 8 8 PRO A 289 PHE A 293 5 5 HELIX 9 9 LEU A 314 TYR A 318 1 5 HELIX 10 10 GLY A 346 GLU A 351 1 6 HELIX 11 11 THR B 187 ALA B 191 5 5 HELIX 12 12 LYS B 246 THR B 250 5 5 HELIX 13 13 ARG C 246 THR C 250 5 5 SHEET 1 AA 2 LEU A 22 ASP A 25 0 SHEET 2 AA 2 GLY A 29 ILE A 36 -1 O GLY A 29 N ASP A 25 SHEET 1 AB 2 ARG A 77 LYS A 86 0 SHEET 2 AB 2 SER A 91 THR A 102 -1 O TRP A 92 N VAL A 85 SHEET 1 AC 5 GLY A 185 LEU A 189 0 SHEET 2 AC 5 VAL A 165 MET A 170 -1 O SER A 167 N VAL A 188 SHEET 3 AC 5 PHE A 353 ASP A 358 -1 O PHE A 353 N MET A 170 SHEET 4 AC 5 ARG A 363 ALA A 368 -1 O ARG A 363 N ASP A 358 SHEET 5 AC 5 LYS A 198 PRO A 205 -1 O LYS A 198 N ALA A 368 SHEET 1 AD 3 GLN A 213 ILE A 214 0 SHEET 2 AD 3 ALA A 238 VAL A 240 -1 O ALA A 238 N ILE A 214 SHEET 3 AD 3 LEU A 343 ILE A 345 1 O LEU A 343 N ILE A 239 SHEET 1 AE 5 GLN A 224 SER A 225 0 SHEET 2 AE 5 ILE A 216 ILE A 221 -1 O ILE A 221 N GLN A 224 SHEET 3 AE 5 ILE A 296 ARG A 301 -1 O SER A 297 N GLU A 220 SHEET 4 AE 5 ARG A 307 ILE A 313 -1 O PHE A 309 N LEU A 300 SHEET 5 AE 5 SER A 380 SER A 387 -1 O GLU A 381 N THR A 312 SHEET 1 AF 2 LEU A 247 PRO A 250 0 SHEET 2 AF 2 ILE A 336 SER A 339 1 O SER A 337 N LEU A 249 SHEET 1 AG 4 ILE A 319 PRO A 321 0 SHEET 2 AG 4 GLU A 330 PHE A 334 -1 O ARG A 333 N GLN A 320 SHEET 3 AG 4 ALA A 281 TRP A 283 -1 O ALA A 281 N TYR A 332 SHEET 4 AG 4 THR C 187 PHE C 188 -1 O THR C 187 N CYS A 282 SHEET 1 AH 2 GLU A 373 ILE A 374 0 SHEET 2 AH 2 ALA A 377 ALA A 378 -1 O ALA A 377 N ILE A 374 SHEET 1 BA 4 GLN B 162 SER B 166 0 SHEET 2 BA 4 LEU B 177 SER B 184 -1 O SER B 180 N SER B 166 SHEET 3 BA 4 THR B 237 MET B 242 -1 O LEU B 238 N CYS B 181 SHEET 4 BA 4 PHE B 227 ASP B 232 -1 O THR B 228 N GLN B 241 SHEET 1 BB 4 LEU B 170 VAL B 171 0 SHEET 2 BB 4 THR B 265 VAL B 269 1 O THR B 268 N VAL B 171 SHEET 3 BB 4 ALA B 251 SER B 257 -1 O ALA B 251 N VAL B 267 SHEET 4 BB 4 ARG B 260 ARG B 261 -1 O ARG B 260 N SER B 257 SHEET 1 BC 6 LEU B 170 VAL B 171 0 SHEET 2 BC 6 THR B 265 VAL B 269 1 O THR B 268 N VAL B 171 SHEET 3 BC 6 ALA B 251 SER B 257 -1 O ALA B 251 N VAL B 267 SHEET 4 BC 6 MET B 193 GLN B 198 -1 O THR B 194 N THR B 256 SHEET 5 BC 6 GLU B 205 ILE B 210 -1 O GLU B 205 N ARG B 197 SHEET 6 BC 6 THR B 217 TYR B 219 -1 O THR B 218 N THR B 209 SHEET 1 BD 2 ARG B 260 ARG B 261 0 SHEET 2 BD 2 ALA B 251 SER B 257 -1 O SER B 257 N ARG B 260 SHEET 1 CA 4 GLY C 169 GLN C 172 0 SHEET 2 CA 4 THR C 265 SER C 270 1 O GLN C 266 N GLY C 169 SHEET 3 CA 4 ALA C 251 TYR C 257 -1 O ALA C 251 N VAL C 267 SHEET 4 CA 4 HIS C 260 ARG C 261 -1 O HIS C 260 N TYR C 257 SHEET 1 CB 6 GLY C 169 GLN C 172 0 SHEET 2 CB 6 THR C 265 SER C 270 1 O GLN C 266 N GLY C 169 SHEET 3 CB 6 ALA C 251 TYR C 257 -1 O ALA C 251 N VAL C 267 SHEET 4 CB 6 MET C 193 ALA C 199 -1 O ARG C 194 N ILE C 256 SHEET 5 CB 6 GLY C 203 ILE C 210 -1 O GLY C 203 N ALA C 199 SHEET 6 CB 6 ALA C 217 TYR C 219 -1 O SER C 218 N ASN C 209 SHEET 1 CC 2 HIS C 260 ARG C 261 0 SHEET 2 CC 2 ALA C 251 TYR C 257 -1 O TYR C 257 N HIS C 260 SHEET 1 CD 3 LEU C 177 ALA C 182 0 SHEET 2 CD 3 ARG C 237 MET C 242 -1 O LEU C 238 N CYS C 181 SHEET 3 CD 3 PHE C 227 ARG C 231 -1 O THR C 228 N GLN C 241 SSBOND 1 CYS A 171 CYS A 371 1555 1555 2.06 SSBOND 2 CYS A 230 CYS A 395 1555 1555 2.06 SSBOND 3 CYS A 282 CYS A 331 1555 1555 2.08 SSBOND 4 CYS B 181 CYS B 255 1555 1555 2.05 SSBOND 5 CYS C 181 CYS C 255 1555 1555 2.06 CISPEP 1 THR A 38 PRO A 39 0 -7.82 CISPEP 2 LYS A 144 PRO A 145 0 4.62 CISPEP 3 ALA A 235 ASP A 236 0 0.26 CISPEP 4 GLY A 384 PRO A 385 0 1.82 SITE 1 AC1 2 SER A 148 THR B 187 SITE 1 AC2 3 ASP B 213 ARG B 231 ASN B 233 CRYST1 63.367 153.829 247.178 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004046 0.00000