HEADER OXIDOREDUCTASE 25-JAN-13 3ZKY TITLE ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE AHCMC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_COMMON: ASPERGILLUS NIDULANS; SOURCE 5 ORGANISM_TAXID: 227321; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJB703 KEYWDS SYNTHASE, ANTIBIOTIC BIOSYNTHESIS, B-LACTAM ANTIBIOTIC, KEYWDS 2 OXIDOREDUCTASE, OXYGENASE, PENICILLIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.DARUZZAMAN,I.J.CLIFTON,P.J.RUTLEDGE REVDAT 5 08-MAY-24 3ZKY 1 SOURCE REVDAT 4 20-DEC-23 3ZKY 1 REMARK LINK REVDAT 3 05-JUL-17 3ZKY 1 REMARK REVDAT 2 10-APR-13 3ZKY 1 JRNL REVDAT 1 20-MAR-13 3ZKY 0 JRNL AUTH A.DARUZZAMAN,I.J.CLIFTON,R.M.ADLINGTON,J.E.BALDWIN, JRNL AUTH 2 P.J.RUTLEDGE JRNL TITL THE INTERACTION OF ISOPENICILLIN N SYNTHASE WITH HOMOLOGATED JRNL TITL 2 SUBSTRATE ANALOGUES JRNL TITL 3 DELTA-(L-ALPHA-AMINOADIPOYL)-L-HOMOCYSTEINYL-D-XAA JRNL TITL 4 CHARACTERISED BY PROTEIN CRYSTALLOGRAPHY. JRNL REF CHEMBIOCHEM V. 14 599 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23468426 JRNL DOI 10.1002/CBIC.201200728 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2807 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3822 ; 2.313 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 6.547 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;33.038 ;24.759 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;11.512 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2218 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9616 42.9870 -7.8037 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.1192 REMARK 3 T33: 0.1157 T12: 0.0124 REMARK 3 T13: -0.0556 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 17.9829 L22: 17.3835 REMARK 3 L33: 24.7942 L12: -6.4838 REMARK 3 L13: -16.8780 L23: 9.6332 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.2166 S13: -0.0536 REMARK 3 S21: -0.0148 S22: -0.2953 S23: 0.7222 REMARK 3 S31: -0.0068 S32: -1.1145 S33: 0.2466 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1552 26.8342 -17.7622 REMARK 3 T TENSOR REMARK 3 T11: 0.0894 T22: 0.0595 REMARK 3 T33: 0.0307 T12: -0.0220 REMARK 3 T13: -0.0015 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.3692 L22: 4.7070 REMARK 3 L33: 3.2489 L12: -1.5910 REMARK 3 L13: -1.7381 L23: 0.8406 REMARK 3 S TENSOR REMARK 3 S11: -0.1655 S12: 0.0880 S13: -0.2136 REMARK 3 S21: -0.2237 S22: 0.0399 S23: -0.0404 REMARK 3 S31: 0.2162 S32: 0.0180 S33: 0.1256 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8939 33.5034 -16.6383 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0675 REMARK 3 T33: 0.0338 T12: -0.0051 REMARK 3 T13: -0.0148 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.7693 L22: 0.8870 REMARK 3 L33: 1.5722 L12: 0.3409 REMARK 3 L13: -0.2544 L23: -0.5046 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.1030 S13: 0.0364 REMARK 3 S21: -0.0692 S22: 0.0232 S23: -0.0077 REMARK 3 S31: 0.0131 S32: -0.0548 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5473 21.1852 9.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.0456 T22: 0.0720 REMARK 3 T33: 0.0263 T12: -0.0132 REMARK 3 T13: 0.0061 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.6656 L22: 0.8565 REMARK 3 L33: 7.5291 L12: 0.6243 REMARK 3 L13: 2.1732 L23: 2.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.1229 S13: -0.0129 REMARK 3 S21: 0.1049 S22: -0.0323 S23: 0.0326 REMARK 3 S31: 0.0419 S32: -0.2941 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3505 30.6606 20.6813 REMARK 3 T TENSOR REMARK 3 T11: 0.0590 T22: 0.0842 REMARK 3 T33: 0.0416 T12: 0.0176 REMARK 3 T13: -0.0192 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.1620 L22: 5.4725 REMARK 3 L33: 3.3303 L12: 0.6459 REMARK 3 L13: -0.3229 L23: 0.5979 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.0566 S13: -0.1484 REMARK 3 S21: 0.0914 S22: 0.0084 S23: -0.1280 REMARK 3 S31: 0.0316 S32: 0.0948 S33: -0.0350 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1988 35.5484 19.4342 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0969 REMARK 3 T33: 0.0327 T12: -0.0197 REMARK 3 T13: -0.0016 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.2237 L22: 2.3422 REMARK 3 L33: 6.5428 L12: -1.4864 REMARK 3 L13: 0.9789 L23: 0.5293 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: 0.0222 S13: 0.1105 REMARK 3 S21: 0.0231 S22: 0.1432 S23: -0.1266 REMARK 3 S31: -0.1665 S32: 0.5617 S33: -0.0832 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0847 31.5156 10.4206 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.0484 REMARK 3 T33: 0.0425 T12: -0.0001 REMARK 3 T13: -0.0182 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.5614 L22: 0.6947 REMARK 3 L33: 0.7886 L12: -0.3808 REMARK 3 L13: -0.4560 L23: 0.1790 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: -0.1230 S13: 0.0710 REMARK 3 S21: 0.0237 S22: 0.0153 S23: -0.0335 REMARK 3 S31: -0.0401 S32: 0.0325 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6455 23.3496 10.4696 REMARK 3 T TENSOR REMARK 3 T11: 0.0635 T22: 0.0670 REMARK 3 T33: 0.0560 T12: 0.0156 REMARK 3 T13: -0.0032 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.0762 L22: 1.9637 REMARK 3 L33: 1.0008 L12: 1.3794 REMARK 3 L13: -0.4126 L23: -0.0613 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.1759 S13: 0.0077 REMARK 3 S21: 0.1486 S22: -0.0584 S23: 0.0066 REMARK 3 S31: 0.0788 S32: 0.0483 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5262 29.2412 -10.4949 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0633 REMARK 3 T33: 0.0307 T12: -0.0160 REMARK 3 T13: -0.0025 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.1199 L22: 0.9644 REMARK 3 L33: 2.6210 L12: -0.2174 REMARK 3 L13: 0.5112 L23: -1.1392 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0409 S13: 0.0139 REMARK 3 S21: -0.0861 S22: -0.0161 S23: -0.0481 REMARK 3 S31: 0.0242 S32: 0.0510 S33: 0.0335 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5951 34.1704 -16.4259 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: 0.0965 REMARK 3 T33: 0.0296 T12: 0.0195 REMARK 3 T13: -0.0106 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.0289 L22: 1.6694 REMARK 3 L33: 9.4937 L12: 0.3287 REMARK 3 L13: 4.1327 L23: -0.4653 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: 0.1976 S13: -0.0291 REMARK 3 S21: -0.1859 S22: -0.0909 S23: -0.0617 REMARK 3 S31: 0.1404 S32: 0.4494 S33: 0.0301 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7750 28.6288 -5.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0438 REMARK 3 T33: 0.0376 T12: 0.0056 REMARK 3 T13: 0.0046 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 6.8837 L22: 3.9132 REMARK 3 L33: 3.8777 L12: -1.5510 REMARK 3 L13: 0.6277 L23: -1.2485 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.2138 S13: 0.2604 REMARK 3 S21: -0.0922 S22: -0.0668 S23: -0.3003 REMARK 3 S31: -0.0189 S32: 0.2569 S33: 0.0395 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5668 31.7942 6.5562 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.0549 REMARK 3 T33: 0.0419 T12: 0.0034 REMARK 3 T13: -0.0158 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 7.4874 L22: 0.5408 REMARK 3 L33: 3.3872 L12: 0.0953 REMARK 3 L13: -4.7996 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: -0.0715 S13: 0.1038 REMARK 3 S21: 0.0309 S22: -0.0462 S23: 0.0445 REMARK 3 S31: -0.0721 S32: -0.0529 S33: -0.0308 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4464 43.1326 14.4173 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.0451 REMARK 3 T33: 0.0556 T12: 0.0093 REMARK 3 T13: 0.0057 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.9655 L22: 6.2124 REMARK 3 L33: 2.3674 L12: 0.5217 REMARK 3 L13: -0.3335 L23: -2.8260 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.1363 S13: 0.0756 REMARK 3 S21: 0.5267 S22: -0.0058 S23: -0.0242 REMARK 3 S31: -0.3203 S32: -0.0934 S33: -0.0308 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3335 38.6623 0.5676 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: 0.0485 REMARK 3 T33: 0.0365 T12: 0.0025 REMARK 3 T13: -0.0140 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.0786 L22: 1.3106 REMARK 3 L33: 0.8569 L12: -0.2515 REMARK 3 L13: -0.7255 L23: 0.5557 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.0613 S13: 0.0802 REMARK 3 S21: 0.0365 S22: -0.0427 S23: 0.0785 REMARK 3 S31: -0.0487 S32: -0.0429 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4058 41.7954 -3.2915 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0560 REMARK 3 T33: 0.0551 T12: 0.0236 REMARK 3 T13: -0.0171 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.9340 L22: 5.9050 REMARK 3 L33: 1.9037 L12: 1.5607 REMARK 3 L13: -0.2038 L23: -0.3949 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: 0.1166 S13: 0.2181 REMARK 3 S21: -0.2871 S22: -0.0676 S23: 0.2345 REMARK 3 S31: -0.0228 S32: -0.0447 S33: 0.0479 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2533 40.9264 -9.8059 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0530 REMARK 3 T33: 0.0417 T12: 0.0086 REMARK 3 T13: -0.0053 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.5612 L22: 1.3483 REMARK 3 L33: 0.9314 L12: 0.4414 REMARK 3 L13: -0.2458 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: 0.0865 S13: 0.1336 REMARK 3 S21: -0.0791 S22: -0.0036 S23: 0.0136 REMARK 3 S31: -0.1076 S32: -0.0096 S33: -0.0219 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4266 37.0860 2.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.0481 T22: 0.0588 REMARK 3 T33: 0.0561 T12: -0.0039 REMARK 3 T13: -0.0104 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.5697 L22: 0.4785 REMARK 3 L33: 0.5263 L12: -0.1712 REMARK 3 L13: -0.4054 L23: -0.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.0348 S13: 0.0536 REMARK 3 S21: 0.0274 S22: -0.0187 S23: 0.0295 REMARK 3 S31: -0.0336 S32: -0.0222 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8733 47.2153 -17.9982 REMARK 3 T TENSOR REMARK 3 T11: 0.2350 T22: 0.1168 REMARK 3 T33: 0.0081 T12: -0.0082 REMARK 3 T13: -0.0005 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.6020 L22: 3.6761 REMARK 3 L33: 15.9865 L12: -1.9659 REMARK 3 L13: 6.0021 L23: -7.2180 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.5468 S13: -0.0055 REMARK 3 S21: 0.3479 S22: -0.0205 S23: -0.0568 REMARK 3 S31: -0.6460 S32: 0.5112 S33: 0.0892 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 306 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1487 46.8454 -5.2735 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.0270 REMARK 3 T33: 0.0772 T12: -0.0282 REMARK 3 T13: -0.0029 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.5984 L22: 4.9053 REMARK 3 L33: 2.6292 L12: -0.4753 REMARK 3 L13: 0.0653 L23: -1.7715 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.0452 S13: 0.1537 REMARK 3 S21: 0.0175 S22: -0.1499 S23: -0.2529 REMARK 3 S31: -0.2460 S32: 0.2302 S33: 0.1018 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1731 45.6963 8.8134 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.3139 REMARK 3 T33: 0.1860 T12: -0.0058 REMARK 3 T13: -0.0436 T23: 0.1491 REMARK 3 L TENSOR REMARK 3 L11: 1.4905 L22: 3.8984 REMARK 3 L33: 8.5818 L12: -1.4751 REMARK 3 L13: -3.2172 L23: 1.1893 REMARK 3 S TENSOR REMARK 3 S11: -0.1826 S12: -0.4023 S13: 0.1336 REMARK 3 S21: 0.0019 S22: 1.0518 S23: 0.5154 REMARK 3 S31: 0.3720 S32: 0.2931 S33: -0.8692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES WITH TLS ADDED REMARK 4 REMARK 4 3ZKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND (1 1 1) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1BK0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M LITHIUM SULPHATE, 76MM TRIS/HCL REMARK 280 (PH8.5) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.35250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.46000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.46000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.35250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA SER A 312 O HOH A 2220 1.79 REMARK 500 CG PRO A 196 O HOH A 2157 2.05 REMARK 500 CD PRO A 196 O HOH A 2157 2.12 REMARK 500 CB GLU A 68 O HOH A 2062 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 299 O HOH A 2062 2564 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 167 CD GLU A 167 OE1 0.091 REMARK 500 GLU A 167 CD GLU A 167 OE2 0.073 REMARK 500 GLU A 197 CG GLU A 197 CD 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 13 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 LYS A 25 CD - CE - NZ ANGL. DEV. = -14.4 DEGREES REMARK 500 ASP A 72 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 GLU A 125 OE1 - CD - OE2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 148 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 173 CG - CD - NE ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 173 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 271 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 308 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 308 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 GLU A 309 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -108.62 -97.53 REMARK 500 HIS A 82 59.37 -107.26 REMARK 500 LYS A 97 -44.81 -135.80 REMARK 500 THR A 123 -5.93 78.63 REMARK 500 ASP A 179 -4.20 -140.12 REMARK 500 ASN A 230 -26.29 -159.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 3 VAL A 4 -145.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1332 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 94.7 REMARK 620 3 HIS A 270 NE2 83.3 88.8 REMARK 620 4 WT4 A1333 S 89.3 175.8 93.0 REMARK 620 5 WT4 A1333 S 93.0 161.8 108.5 15.7 REMARK 620 6 WT4 A1333 S1 87.2 80.6 165.1 98.4 83.3 REMARK 620 7 WT4 A1333 S1 98.2 98.7 172.2 79.4 63.8 22.1 REMARK 620 8 HOH A2176 O 176.8 87.9 94.9 88.1 85.0 95.1 83.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: N-[(5S)-5-AMINO-5-CARBOXYPENTANOYL]-L-HOMOCYSTEYL-S- REMARK 630 METHYL-D-CYSTEINE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 WT4 A 1333 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: UN1 HCS 060 REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WT4 A 1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1335 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZKU RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE AHCV DBREF 3ZKY A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET FE A1332 1 HET WT4 A1333 50 HET SO4 A1334 5 HET GOL A1335 6 HETNAM FE FE (III) ION HETNAM WT4 N-[(5S)-5-AMINO-5-CARBOXYPENTANOYL]-L-HOMOCYSTEYL-S- HETNAM 2 WT4 METHYL-D-CYSTEINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE FE 3+ FORMUL 3 WT4 C14 H25 N3 O6 S2 FORMUL 4 SO4 O4 S 2- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *238(H2 O) HELIX 1 1 SER A 15 GLY A 19 5 5 HELIX 2 2 ASP A 21 ASP A 38 1 18 HELIX 3 3 ASN A 50 ILE A 65 1 16 HELIX 4 4 THR A 66 ALA A 74 1 9 HELIX 5 5 HIS A 114 ALA A 119 1 6 HELIX 6 6 GLY A 137 LEU A 164 1 28 HELIX 7 7 PHE A 171 PHE A 175 5 5 HELIX 8 8 PRO A 196 ILE A 200 5 5 HELIX 9 9 GLY A 254 THR A 261 1 8 HELIX 10 10 SER A 312 GLY A 329 1 18 SHEET 1 AA 8 LYS A 11 ASP A 13 0 SHEET 2 AA 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA 8 ILE A 220 GLN A 225 -1 O THR A 221 N ASN A 252 SHEET 5 AA 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA 8 SER A 183 TYR A 189 -1 O SER A 183 N PHE A 285 SHEET 7 AA 8 GLU A 101 TYR A 105 -1 O GLU A 101 N ARG A 188 SHEET 8 AA 8 GLY A 89 TYR A 91 -1 O GLY A 89 N CYS A 104 SHEET 1 AB 5 LYS A 201 THR A 202 0 SHEET 2 AB 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AB 5 HIS A 270 LYS A 273 -1 O HIS A 270 N HIS A 214 SHEET 4 AB 5 LEU A 231 THR A 235 -1 O GLN A 232 N ARG A 271 SHEET 5 AB 5 GLY A 238 ASP A 241 -1 O GLY A 238 N THR A 235 LINK NE2 HIS A 214 FE FE A1332 1555 1555 2.17 LINK OD1 ASP A 216 FE FE A1332 1555 1555 2.09 LINK NE2 HIS A 270 FE FE A1332 1555 1555 2.23 LINK FE FE A1332 S BWT4 A1333 1555 1555 2.35 LINK FE FE A1332 S AWT4 A1333 1555 1555 2.65 LINK FE FE A1332 S1 AWT4 A1333 1555 1555 2.61 LINK FE FE A1332 S1 BWT4 A1333 1555 1555 1.97 LINK FE FE A1332 O HOH A2176 1555 1555 2.13 CISPEP 1 ASP A 193 PRO A 194 0 5.32 SITE 1 AC1 5 HIS A 214 ASP A 216 HIS A 270 WT4 A1333 SITE 2 AC1 5 HOH A2176 SITE 1 AC2 19 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC2 19 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC2 19 LEU A 231 HIS A 270 VAL A 272 SER A 281 SITE 4 AC2 19 PRO A 283 PHE A 285 LEU A 321 LEU A 324 SITE 5 AC2 19 FE A1332 HOH A2179 HOH A2181 SITE 1 AC3 9 ARG A 53 ASP A 140 PHE A 141 HOH A2120 SITE 2 AC3 9 HOH A2125 HOH A2127 HOH A2236 HOH A2237 SITE 3 AC3 9 HOH A2238 SITE 1 AC4 9 TYR A 43 LEU A 223 TYR A 224 GLN A 225 SITE 2 AC4 9 SER A 226 ALA A 244 ASP A 245 GLY A 248 SITE 3 AC4 9 HOH A2190 CRYST1 46.705 71.290 100.920 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021411 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009909 0.00000