HEADER OXIDOREDUCTASE 31-JAN-13 3ZLI TITLE CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEMETHYLASE UTY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: JMJC DOMAIN, RESIDUES 878-1347; COMPND 5 SYNONYM: UBIQUITOUSLY-TRANSCRIBED TPR PROTEIN ON THE Y CHROMOSOME, COMPND 6 UBIQUITOUSLY-TRANSCRIBED Y CHROMOSOME TETRATRICOPEPTIDE REPEAT COMPND 7 PROTEIN; COMPND 8 EC: 1.14.11.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFB-CT10HF-LIC KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VOLLMAR,C.GILEADI,L.SHRESTHA,S.GOUBIN,C.JOHANSSON,T.KROJER, AUTHOR 2 J.W.RAYNOR,A.BRADLEY,F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA,A.EDWARDS, AUTHOR 3 U.OPPERMANN REVDAT 5 20-DEC-23 3ZLI 1 REMARK LINK REVDAT 4 09-OCT-19 3ZLI 1 REMARK REVDAT 3 20-MAY-15 3ZLI 1 JRNL REMARK REVDAT 2 29-JAN-14 3ZLI 1 REMARK HET HETNAM FORMUL REVDAT 2 2 1 LINK SITE HETATM REVDAT 1 27-FEB-13 3ZLI 0 JRNL AUTH L.J.WALPORT,R.J.HOPKINSON,M.VOLLMAR,S.K.MADDEN,C.GILEADI, JRNL AUTH 2 U.OPPERMANN,C.J.SCHOFIELD,C.JOHANSSON JRNL TITL HUMAN UTY(KDM6C) IS A MALE-SPECIFIC NEPSILON-METHYL LYSYL JRNL TITL 2 DEMETHYLASE. JRNL REF J.BIOL.CHEM. V. 289 18302 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24798337 JRNL DOI 10.1074/JBC.M114.555052 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 104567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 391 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7027 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 549 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.69000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 1.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.500 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7387 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6905 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10076 ; 1.533 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15861 ; 1.081 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 914 ; 5.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 346 ;36.318 ;24.740 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1200 ;11.830 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1115 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8432 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1767 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3556 ; 1.845 ; 2.246 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3555 ; 1.843 ; 2.246 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4448 ; 2.632 ; 3.355 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3831 ; 2.559 ; 2.545 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 882 A 1190 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6981 -4.1204 24.5041 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0376 REMARK 3 T33: 0.0471 T12: -0.0109 REMARK 3 T13: 0.0033 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.8897 L22: 0.8984 REMARK 3 L33: 0.7385 L12: -0.0662 REMARK 3 L13: 0.0224 L23: 0.3657 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.0544 S13: 0.0844 REMARK 3 S21: -0.0581 S22: -0.0812 S23: -0.0144 REMARK 3 S31: -0.0150 S32: -0.0761 S33: 0.0303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1191 A 1344 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7560 -22.1556 19.1423 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0393 REMARK 3 T33: 0.0646 T12: -0.0267 REMARK 3 T13: -0.0159 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.9852 L22: 0.5820 REMARK 3 L33: 0.2397 L12: 0.1861 REMARK 3 L13: 0.4543 L23: 0.1415 REMARK 3 S TENSOR REMARK 3 S11: 0.1653 S12: -0.1130 S13: -0.1253 REMARK 3 S21: 0.0697 S22: -0.1008 S23: -0.0437 REMARK 3 S31: 0.0445 S32: -0.0103 S33: -0.0645 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 881 B 1217 REMARK 3 ORIGIN FOR THE GROUP (A): -38.7019 -48.6555 22.6361 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0438 REMARK 3 T33: 0.1116 T12: -0.0102 REMARK 3 T13: -0.0378 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8201 L22: 0.9508 REMARK 3 L33: 0.9248 L12: -0.0311 REMARK 3 L13: -0.2437 L23: -0.3779 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: -0.0193 S13: -0.1148 REMARK 3 S21: -0.0437 S22: 0.0407 S23: 0.2283 REMARK 3 S31: -0.0350 S32: 0.0218 S33: -0.1280 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1218 B 1344 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7811 -47.6283 3.5356 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.1617 REMARK 3 T33: 0.0422 T12: 0.0616 REMARK 3 T13: -0.0371 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.3997 L22: 1.0568 REMARK 3 L33: 0.9823 L12: -1.2565 REMARK 3 L13: 1.5605 L23: -0.9737 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: 0.3718 S13: -0.0216 REMARK 3 S21: -0.1043 S22: -0.1869 S23: -0.0603 REMARK 3 S31: 0.1009 S32: 0.2013 S33: 0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 3ZLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3AVS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRIMETHYLAMINE N-OXIDE; 0.1M REMARK 280 HEPES PH 7.5; 10%(W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.29250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.12100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.12450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.12100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.29250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.12450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 877 REMARK 465 LEU A 878 REMARK 465 PRO A 879 REMARK 465 LYS A 1000 REMARK 465 ARG A 1001 REMARK 465 THR A 1002 REMARK 465 GLN A 1003 REMARK 465 HIS A 1004 REMARK 465 LYS A 1005 REMARK 465 ASP A 1006 REMARK 465 HIS A 1007 REMARK 465 SER A 1008 REMARK 465 ASP A 1009 REMARK 465 ASN A 1010 REMARK 465 GLU A 1011 REMARK 465 SER A 1012 REMARK 465 THR A 1013 REMARK 465 SER A 1014 REMARK 465 SER A 1015 REMARK 465 GLU A 1016 REMARK 465 ASN A 1017 REMARK 465 SER A 1018 REMARK 465 GLY A 1019 REMARK 465 ARG A 1020 REMARK 465 ARG A 1021 REMARK 465 ARG A 1022 REMARK 465 SER A 1346 REMARK 465 SER A 1347 REMARK 465 ALA A 1348 REMARK 465 GLU A 1349 REMARK 465 ASN A 1350 REMARK 465 LEU A 1351 REMARK 465 TYR A 1352 REMARK 465 PHE A 1353 REMARK 465 GLN A 1354 REMARK 465 MET B 877 REMARK 465 LEU B 878 REMARK 465 PRO B 879 REMARK 465 LYS B 880 REMARK 465 LYS B 1000 REMARK 465 ARG B 1001 REMARK 465 THR B 1002 REMARK 465 GLN B 1003 REMARK 465 HIS B 1004 REMARK 465 LYS B 1005 REMARK 465 ASP B 1006 REMARK 465 HIS B 1007 REMARK 465 SER B 1008 REMARK 465 ASP B 1009 REMARK 465 ASN B 1010 REMARK 465 GLU B 1011 REMARK 465 SER B 1012 REMARK 465 THR B 1013 REMARK 465 SER B 1014 REMARK 465 SER B 1015 REMARK 465 GLU B 1016 REMARK 465 ASN B 1017 REMARK 465 SER B 1018 REMARK 465 GLY B 1019 REMARK 465 ARG B 1020 REMARK 465 ARG B 1021 REMARK 465 ARG B 1022 REMARK 465 LYS B 1023 REMARK 465 GLY B 1024 REMARK 465 PRO B 1025 REMARK 465 SER B 1346 REMARK 465 SER B 1347 REMARK 465 ALA B 1348 REMARK 465 GLU B 1349 REMARK 465 ASN B 1350 REMARK 465 LEU B 1351 REMARK 465 TYR B 1352 REMARK 465 PHE B 1353 REMARK 465 GLN B 1354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 880 CG CD CE NZ REMARK 470 ASP A 881 CG OD1 OD2 REMARK 470 LYS A 882 CG CD CE NZ REMARK 470 LYS A 911 CE NZ REMARK 470 LYS A 925 CE NZ REMARK 470 LYS A 934 CD CE NZ REMARK 470 GLU A 971 CG CD OE1 OE2 REMARK 470 GLU A 997 CG CD OE1 OE2 REMARK 470 GLU A 999 CG CD OE1 OE2 REMARK 470 LYS A1023 CG CD CE NZ REMARK 470 LYS A1041 CD CE NZ REMARK 470 LYS A1130 CG CD CE NZ REMARK 470 LYS A1229 CD CE NZ REMARK 470 LYS A1234 CD CE NZ REMARK 470 LYS A1248 CE NZ REMARK 470 ASN A1271 CG OD1 ND2 REMARK 470 ASP A1272 CG OD1 OD2 REMARK 470 LYS A1311 CG CD CE NZ REMARK 470 SER A1345 CA C O CB OG REMARK 470 ASP B 881 CG OD1 OD2 REMARK 470 LYS B 882 CD CE NZ REMARK 470 ASN B 894 CG OD1 ND2 REMARK 470 LYS B 895 CE NZ REMARK 470 LYS B 965 CD CE NZ REMARK 470 GLU B 971 CG CD OE1 OE2 REMARK 470 GLU B 996 CG CD OE1 OE2 REMARK 470 GLU B 999 CG CD OE1 OE2 REMARK 470 LYS B1027 CD CE NZ REMARK 470 LYS B1041 CE NZ REMARK 470 LYS B1234 CG CD CE NZ REMARK 470 LYS B1299 CG CD CE NZ REMARK 470 GLN B1332 CG CD OE1 NE2 REMARK 470 SER B1345 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 905 O HOH A 2030 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1156 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A1310 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 940 73.23 -155.07 REMARK 500 ALA A 955 -121.84 53.36 REMARK 500 SER A 972 68.04 -152.04 REMARK 500 ASN A 998 38.50 -98.92 REMARK 500 MET A1076 -62.61 -104.98 REMARK 500 ASN A1097 29.95 47.82 REMARK 500 ILE A1280 -60.42 -93.69 REMARK 500 ASN A1287 -69.17 77.82 REMARK 500 ASN B 940 73.34 -154.14 REMARK 500 ALA B 955 -124.00 55.30 REMARK 500 ASN B 998 45.93 -99.77 REMARK 500 MET B1076 -61.86 -105.70 REMARK 500 ILE B1280 -61.59 -92.84 REMARK 500 ASN B1287 -68.70 76.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A4001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1093 NE2 REMARK 620 2 GLU A1095 OE2 95.0 REMARK 620 3 HIS A1173 NE2 85.5 88.2 REMARK 620 4 HOH A2140 O 91.2 83.1 170.4 REMARK 620 5 AKG A4000 O1 169.2 95.0 99.1 85.7 REMARK 620 6 AKG A4000 O5 90.9 169.2 101.3 87.7 78.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1278 SG REMARK 620 2 CYS A1281 SG 109.6 REMARK 620 3 CYS A1305 SG 114.2 111.9 REMARK 620 4 CYS A1308 SG 109.0 108.4 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B4001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1093 NE2 REMARK 620 2 GLU B1095 OE2 94.5 REMARK 620 3 HIS B1173 NE2 86.1 87.2 REMARK 620 4 HOH B2121 O 91.2 85.6 172.0 REMARK 620 5 AKG B4000 O5 92.8 169.6 100.8 86.9 REMARK 620 6 AKG B4000 O1 171.6 93.4 97.1 86.7 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1278 SG REMARK 620 2 CYS B1281 SG 109.1 REMARK 620 3 CYS B1305 SG 111.6 113.7 REMARK 620 4 CYS B1308 SG 107.8 109.8 104.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2346 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2347 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2346 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2347 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2348 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2348 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2349 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2350 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2349 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2351 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2350 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2352 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZPO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 WITH BOUND GSK J1 DBREF 3ZLI A 878 1347 UNP O14607 UTY_HUMAN 878 1347 DBREF 3ZLI B 878 1347 UNP O14607 UTY_HUMAN 878 1347 SEQADV 3ZLI MET A 877 UNP O14607 EXPRESSION TAG SEQADV 3ZLI ALA A 1348 UNP O14607 EXPRESSION TAG SEQADV 3ZLI GLU A 1349 UNP O14607 EXPRESSION TAG SEQADV 3ZLI ASN A 1350 UNP O14607 EXPRESSION TAG SEQADV 3ZLI LEU A 1351 UNP O14607 EXPRESSION TAG SEQADV 3ZLI TYR A 1352 UNP O14607 EXPRESSION TAG SEQADV 3ZLI PHE A 1353 UNP O14607 EXPRESSION TAG SEQADV 3ZLI GLN A 1354 UNP O14607 EXPRESSION TAG SEQADV 3ZLI MET B 877 UNP O14607 EXPRESSION TAG SEQADV 3ZLI ALA B 1348 UNP O14607 EXPRESSION TAG SEQADV 3ZLI GLU B 1349 UNP O14607 EXPRESSION TAG SEQADV 3ZLI ASN B 1350 UNP O14607 EXPRESSION TAG SEQADV 3ZLI LEU B 1351 UNP O14607 EXPRESSION TAG SEQADV 3ZLI TYR B 1352 UNP O14607 EXPRESSION TAG SEQADV 3ZLI PHE B 1353 UNP O14607 EXPRESSION TAG SEQADV 3ZLI GLN B 1354 UNP O14607 EXPRESSION TAG SEQRES 1 A 478 MET LEU PRO LYS ASP LYS LEU ASN PRO PRO THR PRO SER SEQRES 2 A 478 ILE TYR LEU GLU ASN LYS ARG ASP ALA PHE PHE PRO PRO SEQRES 3 A 478 LEU HIS GLN PHE CYS THR ASN PRO LYS ASN PRO VAL THR SEQRES 4 A 478 VAL ILE ARG GLY LEU ALA GLY ALA LEU LYS LEU ASP LEU SEQRES 5 A 478 GLY LEU PHE SER THR LYS THR LEU VAL GLU ALA ASN ASN SEQRES 6 A 478 GLU HIS MET VAL GLU VAL ARG THR GLN LEU LEU GLN PRO SEQRES 7 A 478 ALA ASP GLU ASN TRP ASP PRO THR GLY THR LYS LYS ILE SEQRES 8 A 478 TRP ARG CYS GLU SER ASN ARG SER HIS THR THR ILE ALA SEQRES 9 A 478 LYS TYR ALA GLN TYR GLN ALA SER SER PHE GLN GLU SER SEQRES 10 A 478 LEU ARG GLU GLU ASN GLU LYS ARG THR GLN HIS LYS ASP SEQRES 11 A 478 HIS SER ASP ASN GLU SER THR SER SER GLU ASN SER GLY SEQRES 12 A 478 ARG ARG ARG LYS GLY PRO PHE LYS THR ILE LYS PHE GLY SEQRES 13 A 478 THR ASN ILE ASP LEU SER ASP ASN LYS LYS TRP LYS LEU SEQRES 14 A 478 GLN LEU HIS GLU LEU THR LYS LEU PRO ALA PHE ALA ARG SEQRES 15 A 478 VAL VAL SER ALA GLY ASN LEU LEU THR HIS VAL GLY HIS SEQRES 16 A 478 THR ILE LEU GLY MET ASN THR VAL GLN LEU TYR MET LYS SEQRES 17 A 478 VAL PRO GLY SER ARG THR PRO GLY HIS GLN GLU ASN ASN SEQRES 18 A 478 ASN PHE CYS SER VAL ASN ILE ASN ILE GLY PRO GLY ASP SEQRES 19 A 478 CYS GLU TRP PHE VAL VAL PRO GLU ASP TYR TRP GLY VAL SEQRES 20 A 478 LEU ASN ASP PHE CYS GLU LYS ASN ASN LEU ASN PHE LEU SEQRES 21 A 478 MET SER SER TRP TRP PRO ASN LEU GLU ASP LEU TYR GLU SEQRES 22 A 478 ALA ASN VAL PRO VAL TYR ARG PHE ILE GLN ARG PRO GLY SEQRES 23 A 478 ASP LEU VAL TRP ILE ASN ALA GLY THR VAL HIS TRP VAL SEQRES 24 A 478 GLN ALA VAL GLY TRP CYS ASN ASN ILE ALA TRP ASN VAL SEQRES 25 A 478 GLY PRO LEU THR ALA CYS GLN TYR LYS LEU ALA VAL GLU SEQRES 26 A 478 ARG TYR GLU TRP ASN LYS LEU LYS SER VAL LYS SER PRO SEQRES 27 A 478 VAL PRO MET VAL HIS LEU SER TRP ASN MET ALA ARG ASN SEQRES 28 A 478 ILE LYS VAL SER ASP PRO LYS LEU PHE GLU MET ILE LYS SEQRES 29 A 478 TYR CYS LEU LEU LYS ILE LEU LYS GLN TYR GLN THR LEU SEQRES 30 A 478 ARG GLU ALA LEU VAL ALA ALA GLY LYS GLU VAL ILE TRP SEQRES 31 A 478 HIS GLY ARG THR ASN ASP GLU PRO ALA HIS TYR CYS SER SEQRES 32 A 478 ILE CYS GLU VAL GLU VAL PHE ASN LEU LEU PHE VAL THR SEQRES 33 A 478 ASN GLU SER ASN THR GLN LYS THR TYR ILE VAL HIS CYS SEQRES 34 A 478 HIS ASP CYS ALA ARG LYS THR SER LYS SER LEU GLU ASN SEQRES 35 A 478 PHE VAL VAL LEU GLU GLN TYR LYS MET GLU ASP LEU ILE SEQRES 36 A 478 GLN VAL TYR ASP GLN PHE THR LEU ALA LEU SER LEU SER SEQRES 37 A 478 SER SER SER ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 478 MET LEU PRO LYS ASP LYS LEU ASN PRO PRO THR PRO SER SEQRES 2 B 478 ILE TYR LEU GLU ASN LYS ARG ASP ALA PHE PHE PRO PRO SEQRES 3 B 478 LEU HIS GLN PHE CYS THR ASN PRO LYS ASN PRO VAL THR SEQRES 4 B 478 VAL ILE ARG GLY LEU ALA GLY ALA LEU LYS LEU ASP LEU SEQRES 5 B 478 GLY LEU PHE SER THR LYS THR LEU VAL GLU ALA ASN ASN SEQRES 6 B 478 GLU HIS MET VAL GLU VAL ARG THR GLN LEU LEU GLN PRO SEQRES 7 B 478 ALA ASP GLU ASN TRP ASP PRO THR GLY THR LYS LYS ILE SEQRES 8 B 478 TRP ARG CYS GLU SER ASN ARG SER HIS THR THR ILE ALA SEQRES 9 B 478 LYS TYR ALA GLN TYR GLN ALA SER SER PHE GLN GLU SER SEQRES 10 B 478 LEU ARG GLU GLU ASN GLU LYS ARG THR GLN HIS LYS ASP SEQRES 11 B 478 HIS SER ASP ASN GLU SER THR SER SER GLU ASN SER GLY SEQRES 12 B 478 ARG ARG ARG LYS GLY PRO PHE LYS THR ILE LYS PHE GLY SEQRES 13 B 478 THR ASN ILE ASP LEU SER ASP ASN LYS LYS TRP LYS LEU SEQRES 14 B 478 GLN LEU HIS GLU LEU THR LYS LEU PRO ALA PHE ALA ARG SEQRES 15 B 478 VAL VAL SER ALA GLY ASN LEU LEU THR HIS VAL GLY HIS SEQRES 16 B 478 THR ILE LEU GLY MET ASN THR VAL GLN LEU TYR MET LYS SEQRES 17 B 478 VAL PRO GLY SER ARG THR PRO GLY HIS GLN GLU ASN ASN SEQRES 18 B 478 ASN PHE CYS SER VAL ASN ILE ASN ILE GLY PRO GLY ASP SEQRES 19 B 478 CYS GLU TRP PHE VAL VAL PRO GLU ASP TYR TRP GLY VAL SEQRES 20 B 478 LEU ASN ASP PHE CYS GLU LYS ASN ASN LEU ASN PHE LEU SEQRES 21 B 478 MET SER SER TRP TRP PRO ASN LEU GLU ASP LEU TYR GLU SEQRES 22 B 478 ALA ASN VAL PRO VAL TYR ARG PHE ILE GLN ARG PRO GLY SEQRES 23 B 478 ASP LEU VAL TRP ILE ASN ALA GLY THR VAL HIS TRP VAL SEQRES 24 B 478 GLN ALA VAL GLY TRP CYS ASN ASN ILE ALA TRP ASN VAL SEQRES 25 B 478 GLY PRO LEU THR ALA CYS GLN TYR LYS LEU ALA VAL GLU SEQRES 26 B 478 ARG TYR GLU TRP ASN LYS LEU LYS SER VAL LYS SER PRO SEQRES 27 B 478 VAL PRO MET VAL HIS LEU SER TRP ASN MET ALA ARG ASN SEQRES 28 B 478 ILE LYS VAL SER ASP PRO LYS LEU PHE GLU MET ILE LYS SEQRES 29 B 478 TYR CYS LEU LEU LYS ILE LEU LYS GLN TYR GLN THR LEU SEQRES 30 B 478 ARG GLU ALA LEU VAL ALA ALA GLY LYS GLU VAL ILE TRP SEQRES 31 B 478 HIS GLY ARG THR ASN ASP GLU PRO ALA HIS TYR CYS SER SEQRES 32 B 478 ILE CYS GLU VAL GLU VAL PHE ASN LEU LEU PHE VAL THR SEQRES 33 B 478 ASN GLU SER ASN THR GLN LYS THR TYR ILE VAL HIS CYS SEQRES 34 B 478 HIS ASP CYS ALA ARG LYS THR SER LYS SER LEU GLU ASN SEQRES 35 B 478 PHE VAL VAL LEU GLU GLN TYR LYS MET GLU ASP LEU ILE SEQRES 36 B 478 GLN VAL TYR ASP GLN PHE THR LEU ALA LEU SER LEU SER SEQRES 37 B 478 SER SER SER ALA GLU ASN LEU TYR PHE GLN HET EDO A2345 4 HET EDO A2346 4 HET EDO A2347 4 HET EDO A2348 4 HET EDO A2349 4 HET EDO A2350 4 HET EDO A2351 4 HET EDO A2352 4 HET AKG A4000 10 HET FE2 A4001 1 HET ZN A4002 1 HET EDO B2345 4 HET EDO B2346 4 HET EDO B2347 4 HET EDO B2348 4 HET EDO B2349 4 HET EDO B2350 4 HET AKG B4000 10 HET FE2 B4001 1 HET ZN B4002 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM AKG 2-OXOGLUTARIC ACID HETNAM FE2 FE (II) ION HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 14(C2 H6 O2) FORMUL 11 AKG 2(C5 H6 O5) FORMUL 12 FE2 2(FE 2+) FORMUL 13 ZN 2(ZN 2+) FORMUL 23 HOH *549(H2 O) HELIX 1 1 LYS A 880 ASN A 884 5 5 HELIX 2 2 ASN A 894 PHE A 900 1 7 HELIX 3 3 PHE A 900 ASN A 909 1 10 HELIX 4 4 GLY A 919 LYS A 925 1 7 HELIX 5 5 ASP A 927 PHE A 931 5 5 HELIX 6 6 SER A 932 ASN A 940 1 9 HELIX 7 7 ILE A 979 ASN A 998 1 20 HELIX 8 8 TRP A 1043 THR A 1051 1 9 HELIX 9 9 PRO A 1054 ARG A 1058 5 5 HELIX 10 10 ASN A 1064 VAL A 1069 1 6 HELIX 11 11 GLU A 1095 PHE A 1099 5 5 HELIX 12 12 PRO A 1117 ASP A 1119 5 3 HELIX 13 13 TYR A 1120 ASN A 1131 1 12 HELIX 14 14 ASN A 1143 ALA A 1150 1 8 HELIX 15 15 THR A 1192 LYS A 1209 1 18 HELIX 16 16 PRO A 1216 ILE A 1228 1 13 HELIX 17 17 ASP A 1232 ALA A 1260 1 29 HELIX 18 18 ASN A 1293 GLN A 1298 1 6 HELIX 19 19 CYS A 1305 SER A 1313 1 9 HELIX 20 20 LYS A 1326 GLN A 1336 1 11 HELIX 21 21 ASN B 894 PHE B 900 1 7 HELIX 22 22 PHE B 900 ASN B 909 1 10 HELIX 23 23 GLY B 919 LYS B 925 1 7 HELIX 24 24 ASP B 927 PHE B 931 5 5 HELIX 25 25 SER B 932 ASN B 940 1 9 HELIX 26 26 ILE B 979 ASN B 998 1 20 HELIX 27 27 TRP B 1043 THR B 1051 1 9 HELIX 28 28 PRO B 1054 ARG B 1058 5 5 HELIX 29 29 ASN B 1064 VAL B 1069 1 6 HELIX 30 30 GLU B 1095 PHE B 1099 5 5 HELIX 31 31 PRO B 1117 ASP B 1119 5 3 HELIX 32 32 TYR B 1120 ASN B 1131 1 12 HELIX 33 33 ASN B 1143 ALA B 1150 1 8 HELIX 34 34 THR B 1192 LYS B 1209 1 18 HELIX 35 35 PRO B 1216 ILE B 1228 1 13 HELIX 36 36 ASP B 1232 ALA B 1260 1 29 HELIX 37 37 ASN B 1293 GLN B 1298 1 6 HELIX 38 38 CYS B 1305 SER B 1313 1 9 HELIX 39 39 LYS B 1326 PHE B 1337 1 12 SHEET 1 AA 9 SER A 889 TYR A 891 0 SHEET 2 AA 9 VAL A 914 ARG A 918 1 O VAL A 916 N ILE A 890 SHEET 3 AA 9 LEU A1164 ILE A1167 -1 O LEU A1164 N ILE A 917 SHEET 4 AA 9 CYS A1100 PRO A1108 -1 O SER A1101 N ILE A1167 SHEET 5 AA 9 CYS A1181 VAL A1188 -1 O ASN A1182 N ILE A1106 SHEET 6 AA 9 GLN A1080 LYS A1084 -1 O GLN A1080 N ALA A1185 SHEET 7 AA 9 THR A1028 ASP A1036 -1 O GLY A1032 N MET A1083 SHEET 8 AA 9 MET A 944 LEU A 951 -1 O GLU A 946 N THR A1033 SHEET 9 AA 9 SER A 972 THR A 978 -1 O ASN A 973 N THR A 949 SHEET 1 AB 4 ARG A1089 HIS A1093 0 SHEET 2 AB 4 VAL A1172 ALA A1177 -1 O HIS A1173 N HIS A1093 SHEET 3 AB 4 CYS A1111 VAL A1116 -1 O GLU A1112 N GLN A1176 SHEET 4 AB 4 TYR A1155 GLN A1159 -1 O TYR A1155 N VAL A1115 SHEET 1 AC 3 VAL A1264 TRP A1266 0 SHEET 2 AC 3 PHE A1319 GLU A1323 1 O VAL A1321 N ILE A1265 SHEET 3 AC 3 LEU A1288 THR A1292 -1 O LEU A1289 N LEU A1322 SHEET 1 AD 2 HIS A1276 TYR A1277 0 SHEET 2 AD 2 GLU A1284 VAL A1285 -1 O VAL A1285 N HIS A1276 SHEET 1 BA 9 SER B 889 TYR B 891 0 SHEET 2 BA 9 VAL B 914 ARG B 918 1 O VAL B 916 N ILE B 890 SHEET 3 BA 9 LEU B1164 ILE B1167 -1 O LEU B1164 N ILE B 917 SHEET 4 BA 9 CYS B1100 PRO B1108 -1 O SER B1101 N ILE B1167 SHEET 5 BA 9 CYS B1181 VAL B1188 -1 O ASN B1182 N ILE B1106 SHEET 6 BA 9 GLN B1080 LYS B1084 -1 O GLN B1080 N ALA B1185 SHEET 7 BA 9 THR B1028 ASP B1036 -1 O GLY B1032 N MET B1083 SHEET 8 BA 9 MET B 944 LEU B 951 -1 O GLU B 946 N THR B1033 SHEET 9 BA 9 ASN B 973 THR B 978 -1 O ASN B 973 N THR B 949 SHEET 1 BB 4 ARG B1089 HIS B1093 0 SHEET 2 BB 4 VAL B1172 ALA B1177 -1 O HIS B1173 N HIS B1093 SHEET 3 BB 4 CYS B1111 VAL B1116 -1 O GLU B1112 N GLN B1176 SHEET 4 BB 4 TYR B1155 GLN B1159 -1 O TYR B1155 N VAL B1115 SHEET 1 BC 3 VAL B1264 TRP B1266 0 SHEET 2 BC 3 PHE B1319 GLU B1323 1 O VAL B1321 N ILE B1265 SHEET 3 BC 3 LEU B1288 THR B1292 -1 O LEU B1289 N LEU B1322 SHEET 1 BD 2 HIS B1276 TYR B1277 0 SHEET 2 BD 2 GLU B1284 VAL B1285 -1 O VAL B1285 N HIS B1276 LINK NE2 HIS A1093 FE FE2 A4001 1555 1555 2.20 LINK OE2 GLU A1095 FE FE2 A4001 1555 1555 2.03 LINK NE2 HIS A1173 FE FE2 A4001 1555 1555 2.10 LINK SG CYS A1278 ZN ZN A4002 1555 1555 2.28 LINK SG CYS A1281 ZN ZN A4002 1555 1555 2.36 LINK SG CYS A1305 ZN ZN A4002 1555 1555 2.32 LINK SG CYS A1308 ZN ZN A4002 1555 1555 2.40 LINK O HOH A2140 FE FE2 A4001 1555 1555 2.06 LINK O1 AKG A4000 FE FE2 A4001 1555 1555 2.13 LINK O5 AKG A4000 FE FE2 A4001 1555 1555 2.17 LINK NE2 HIS B1093 FE FE2 B4001 1555 1555 2.20 LINK OE2 GLU B1095 FE FE2 B4001 1555 1555 2.01 LINK NE2 HIS B1173 FE FE2 B4001 1555 1555 2.16 LINK SG CYS B1278 ZN ZN B4002 1555 1555 2.31 LINK SG CYS B1281 ZN ZN B4002 1555 1555 2.39 LINK SG CYS B1305 ZN ZN B4002 1555 1555 2.26 LINK SG CYS B1308 ZN ZN B4002 1555 1555 2.38 LINK O HOH B2121 FE FE2 B4001 1555 1555 2.09 LINK O5 AKG B4000 FE FE2 B4001 1555 1555 2.10 LINK O1 AKG B4000 FE FE2 B4001 1555 1555 2.22 CISPEP 1 GLY A 1024 PRO A 1025 0 1.24 CISPEP 2 GLY A 1107 PRO A 1108 0 10.42 CISPEP 3 GLY B 1107 PRO B 1108 0 4.30 SITE 1 AC1 12 LYS A1084 THR A1090 HIS A1093 GLU A1095 SITE 2 AC1 12 SER A1101 ASN A1103 HIS A1173 ALA A1185 SITE 3 AC1 12 HOH A2135 HOH A2140 EDO A2351 FE2 A4001 SITE 1 AC2 5 HIS A1093 GLU A1095 HIS A1173 HOH A2140 SITE 2 AC2 5 AKG A4000 SITE 1 AC3 4 CYS A1278 CYS A1281 CYS A1305 CYS A1308 SITE 1 AC4 13 LYS B1084 THR B1090 HIS B1093 GLU B1095 SITE 2 AC4 13 SER B1101 ASN B1103 TRP B1113 HIS B1173 SITE 3 AC4 13 ALA B1185 HOH B2115 HOH B2121 EDO B2350 SITE 4 AC4 13 FE2 B4001 SITE 1 AC5 5 HIS B1093 GLU B1095 HIS B1173 HOH B2121 SITE 2 AC5 5 AKG B4000 SITE 1 AC6 4 CYS B1278 CYS B1281 CYS B1305 CYS B1308 SITE 1 AC7 4 ILE A 967 TRP A 968 ARG A 969 ASN A1131 SITE 1 AC8 5 ILE B 967 TRP B 968 ARG B 969 LEU B1133 SITE 2 AC8 5 HOH B2261 SITE 1 AC9 6 THR A 908 CYS A1100 ASN A1168 PRO A1190 SITE 2 AC9 6 THR A1192 CYS A1194 SITE 1 BC1 7 SER A 932 THR A 933 GLN A 986 PRO A1108 SITE 2 BC1 7 HOH A2040 EDO A2348 EDO A2349 SITE 1 BC2 4 GLN B 986 PHE B 990 HOH B2068 EDO B2347 SITE 1 BC3 6 THR B 933 GLN B 986 GLY B1107 PRO B1108 SITE 2 BC3 6 ASN B1182 EDO B2346 SITE 1 BC4 5 GLN A 986 PHE A 990 PRO A1108 HOH A2076 SITE 2 BC4 5 EDO A2347 SITE 1 BC5 4 LYS A 895 VAL B1123 ASP B1126 ALA B1150 SITE 1 BC6 5 LEU A 928 GLY A 929 SER A 932 ILE A1106 SITE 2 BC6 5 EDO A2347 SITE 1 BC7 3 HIS A1267 HIS A1276 TYR A1301 SITE 1 BC8 5 HIS B1267 GLU B1273 HIS B1276 TYR B1301 SITE 2 BC8 5 VAL B1303 SITE 1 BC9 10 GLY A1075 GLN A1080 TYR A1082 GLU A1095 SITE 2 BC9 10 SER A1101 TRP A1186 ASN A1187 HOH A2133 SITE 3 BC9 10 HOH A2140 AKG A4000 SITE 1 CC1 10 GLY B1075 GLN B1080 TYR B1082 GLU B1095 SITE 2 CC1 10 SER B1101 ALA B1185 ASN B1187 HOH B2114 SITE 3 CC1 10 HOH B2121 AKG B4000 SITE 1 CC2 5 TYR A 891 LEU A 892 GLU A 893 ARG A 918 SITE 2 CC2 5 GLN B 991 CRYST1 90.585 110.249 118.242 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008457 0.00000