HEADER SIGNALING PROTEIN 04-FEB-13 3ZLZ TITLE LYS6-LINKED TRI-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH COMPND 7 MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 PLACI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET17B KEYWDS SIGNALING PROTEIN, ATYPICAL CHAIN TYPE, DEUBIQUITINASE, NLEL, KEYWDS 2 BACTERIAL EFFECTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.K.HOSPENTHAL,S.M.V.FREUND,D.KOMANDER REVDAT 5 20-DEC-23 3ZLZ 1 REMARK LINK REVDAT 4 27-SEP-17 3ZLZ 1 REMARK REVDAT 3 22-MAY-13 3ZLZ 1 JRNL REVDAT 2 17-APR-13 3ZLZ 1 JRNL REVDAT 1 10-APR-13 3ZLZ 0 JRNL AUTH M.K.HOSPENTHAL,S.M.V.FREUND,D.KOMANDER JRNL TITL ASSEMBLY, ANALYSIS AND ARCHITECTURE OF ATYPICAL UBIQUITIN JRNL TITL 2 CHAINS JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 555 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23563141 JRNL DOI 10.1038/NSMB.2547 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 4112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.780 REMARK 3 FREE R VALUE TEST SET COUNT : 578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1839 - 4.6007 0.91 1027 135 0.2507 0.2862 REMARK 3 2 4.6007 - 3.6532 0.97 970 167 0.2136 0.2582 REMARK 3 3 3.6532 - 3.1919 0.98 994 137 0.2605 0.3118 REMARK 3 4 3.1919 - 2.9002 0.99 989 139 0.3398 0.3766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1013 REMARK 3 ANGLE : 0.560 1387 REMARK 3 CHIRALITY : 0.034 186 REMARK 3 PLANARITY : 0.002 176 REMARK 3 DIHEDRAL : 11.705 339 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -20.5122 11.2753 29.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.7120 T22: 0.5180 REMARK 3 T33: 0.6846 T12: 0.0726 REMARK 3 T13: -0.0885 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 5.9047 L22: 3.1482 REMARK 3 L33: 6.4969 L12: 3.2374 REMARK 3 L13: 1.0672 L23: 3.5461 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.1472 S13: -0.1950 REMARK 3 S21: -0.1517 S22: -0.1557 S23: 0.2438 REMARK 3 S31: 0.1834 S32: 0.1340 S33: 0.1001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -12.0073 -1.1896 8.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.6437 T22: 0.6369 REMARK 3 T33: 0.4975 T12: -0.0233 REMARK 3 T13: -0.0608 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 6.7357 L22: 2.1540 REMARK 3 L33: 6.0794 L12: -1.4295 REMARK 3 L13: -0.3130 L23: -0.1829 REMARK 3 S TENSOR REMARK 3 S11: -0.6777 S12: 0.0118 S13: 0.2701 REMARK 3 S21: -0.1321 S22: 0.7706 S23: 0.0015 REMARK 3 S31: -0.5230 S32: -0.3697 S33: -0.1249 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SOME LOOPS AND SIDE CHAINS ARE NOT REMARK 3 MODELED DUE TO DISORDER. UBIQUITIN POLYMER, TWO UBIQUITINS IN REMARK 3 ASYMMETRIC UNIT, AND THIRD UBIQUITIN THIRD UBIQUITIN IS PART OF REMARK 3 NEIGHBOURING ASYMMETRIC UNIT. REMARK 4 REMARK 4 3ZLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979192 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 74.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2W9N REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) PEG3350 AND 0.2 M ZINC REMARK 280 ACETATE, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.46500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.46500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.46500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.46500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.46500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.46500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.46500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.46500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.46500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.46500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.46500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.46500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.46500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.46500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 26.23250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 78.69750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 78.69750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 26.23250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 26.23250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 26.23250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 78.69750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 78.69750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 26.23250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 78.69750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 26.23250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 78.69750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 26.23250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 78.69750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 78.69750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 78.69750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 26.23250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 78.69750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 26.23250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 26.23250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 26.23250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 78.69750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 78.69750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 26.23250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 26.23250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 78.69750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 78.69750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 78.69750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 78.69750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 26.23250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 78.69750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 26.23250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 78.69750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 26.23250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 26.23250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 26.23250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 0.000000 1.000000 0.000000 -52.46500 REMARK 350 BIOMT2 1 0.000000 0.000000 -1.000000 52.46500 REMARK 350 BIOMT3 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -52.46500 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 52.46500 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 52.46500 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 52.46500 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -285.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 THR B 9 REMARK 465 GLY B 10 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 SER A 20 OG REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 ASP A 39 CG OD1 OD2 REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 ARG A 42 CZ NH1 NH2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 60 CG OD1 ND2 REMARK 470 GLN A 62 CG CD OE1 NE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 THR A 66 OG1 CG2 REMARK 470 HIS A 68 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 73 CG CD1 CD2 REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 60 CG OD1 ND2 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 73 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 109.47 -58.00 REMARK 500 LYS A 33 -52.18 -130.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1074 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 GLU A 16 OE1 49.8 REMARK 620 3 ASP A 32 OD2 84.2 133.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1075 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASP A 21 OD2 57.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1076 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 16 OE2 REMARK 620 2 GLU B 16 OE1 54.3 REMARK 620 3 ASP B 32 OD2 87.2 129.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1074 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 21 OD2 REMARK 620 2 ASP B 21 OD1 55.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1075 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 64 OE1 REMARK 620 2 HIS B 68 NE2 110.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1074 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1075 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1074 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1075 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1076 DBREF 3ZLZ A 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 3ZLZ B 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 3ZLZ ARG A 48 UNP P0CG47 LYS 48 ENGINEERED MUTATION SEQADV 3ZLZ ARG B 48 UNP P0CG47 LYS 48 ENGINEERED MUTATION SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ZN A1074 1 HET ZN A1075 1 HET ZN B1074 1 HET ZN B1075 1 HET ZN B1076 1 HETNAM ZN ZINC ION FORMUL 3 ZN 5(ZN 2+) HELIX 1 1 THR A 22 ASP A 32 1 11 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 THR B 22 GLY B 35 1 14 HELIX 4 4 PRO B 37 ASP B 39 5 3 HELIX 5 5 LEU B 56 ASN B 60 5 5 SHEET 1 AA 5 THR A 12 GLU A 16 0 SHEET 2 AA 5 GLN A 2 LYS A 6 -1 O ILE A 3 N LEU A 15 SHEET 3 AA 5 THR A 66 LEU A 71 1 O LEU A 67 N LYS A 6 SHEET 4 AA 5 GLN A 41 PHE A 45 -1 O ARG A 42 N VAL A 70 SHEET 5 AA 5 ARG A 48 GLN A 49 -1 O ARG A 48 N PHE A 45 SHEET 1 BA 5 THR B 12 GLU B 16 0 SHEET 2 BA 5 GLN B 2 LYS B 6 -1 O ILE B 3 N LEU B 15 SHEET 3 BA 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 BA 5 GLN B 41 PHE B 45 -1 O ARG B 42 N VAL B 70 SHEET 5 BA 5 ARG B 48 GLN B 49 -1 O ARG B 48 N PHE B 45 LINK OE2 GLU A 16 ZN ZN A1074 11455 1555 2.53 LINK OE1 GLU A 16 ZN ZN A1074 11455 1555 2.68 LINK OD1 ASP A 21 ZN ZN A1075 11455 1555 2.41 LINK OD2 ASP A 21 ZN ZN A1075 11455 1555 2.11 LINK OD2 ASP A 32 ZN ZN A1074 1555 1555 2.55 LINK OE2 GLU B 16 ZN ZN B1076 1555 1555 2.12 LINK OE1 GLU B 16 ZN ZN B1076 1555 1555 2.61 LINK OD2 ASP B 21 ZN ZN B1074 1555 1555 2.55 LINK OD1 ASP B 21 ZN ZN B1074 1555 1555 2.09 LINK OD2 ASP B 32 ZN ZN B1076 5555 1555 2.08 LINK OE1 GLU B 64 ZN ZN B1075 22445 1555 2.23 LINK NE2 HIS B 68 ZN ZN B1075 1555 1555 2.34 SITE 1 AC1 3 MET A 1 GLU A 16 ASP A 32 SITE 1 AC2 1 ASP A 21 SITE 1 AC3 2 ASP B 21 LYS B 29 SITE 1 AC4 2 GLU B 64 HIS B 68 SITE 1 AC5 4 MET B 1 GLU B 16 VAL B 17 ASP B 32 CRYST1 104.930 104.930 104.930 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009530 0.00000