HEADER HYDROLASE 04-FEB-13 3ZM0 TITLE CATALYTIC DOMAIN OF HUMAN SHP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 248-527; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE COMPND 6 PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SHP2, SH-PTP3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: SCS1 ROSETTA T1R; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7HT (MODIFIED PET) KEYWDS HYDROLASE, PTP1B EXPDTA X-RAY DIFFRACTION AUTHOR K.BOHM,A.SCHUETZ,Y.ROSKE,U.HEINEMANN REVDAT 4 20-DEC-23 3ZM0 1 REMARK REVDAT 3 13-MAY-15 3ZM0 1 JRNL REVDAT 2 29-APR-15 3ZM0 1 JRNL REVDAT 1 23-APR-14 3ZM0 0 JRNL AUTH S.GROSSKOPF,C.ECKERT,C.ARKONA,S.RADETZKI,K.BOHM,U.HEINEMANN, JRNL AUTH 2 G.WOLBER,J.VON KRIES,W.BIRCHMEIER,J.RADEMANN JRNL TITL SELECTIVE INHIBITORS OF THE PROTEIN TYROSINE PHOSPHATASE JRNL TITL 2 SHP2 BLOCK CELLULAR MOTILITY AND GROWTH OF CANCER CELLS IN JRNL TITL 3 VITRO AND IN VIVO. JRNL REF CHEMMEDCHEM V. 10 815 2015 JRNL REFN ISSN 1860-7179 JRNL PMID 25877780 JRNL DOI 10.1002/CMDC.201500015 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 3 NUMBER OF REFLECTIONS : 40031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2107 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.33000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2207 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2984 ; 1.862 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 6.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;33.885 ;23.860 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;14.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.591 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1678 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1007 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1508 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 1.524 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2129 ; 2.344 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 3.723 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 852 ; 5.370 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7885 24.0961 48.8671 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.0184 REMARK 3 T33: 0.0048 T12: -0.0246 REMARK 3 T13: -0.0164 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 5.7605 L22: 4.9542 REMARK 3 L33: 8.7888 L12: -3.7400 REMARK 3 L13: -5.6997 L23: 3.5247 REMARK 3 S TENSOR REMARK 3 S11: 0.1787 S12: -0.1381 S13: -0.0516 REMARK 3 S21: -0.1481 S22: -0.0082 S23: -0.1019 REMARK 3 S31: -0.1197 S32: 0.1104 S33: -0.1705 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6324 18.0338 20.7183 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: -0.0049 REMARK 3 T33: 0.0115 T12: 0.0758 REMARK 3 T13: -0.0334 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.2011 L22: 2.3030 REMARK 3 L33: 3.9191 L12: 0.1652 REMARK 3 L13: -0.3395 L23: -0.5218 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: 0.0639 S13: -0.0999 REMARK 3 S21: -0.0829 S22: -0.0805 S23: -0.1997 REMARK 3 S31: 0.7113 S32: 0.4018 S33: -0.0301 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 289 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7759 22.9387 8.0009 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.0440 REMARK 3 T33: 0.0252 T12: -0.0049 REMARK 3 T13: -0.0299 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.1512 L22: 0.1000 REMARK 3 L33: 9.9091 L12: 0.1035 REMARK 3 L13: -0.8683 L23: -0.2159 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0020 S13: -0.0120 REMARK 3 S21: 0.0644 S22: -0.0042 S23: -0.0210 REMARK 3 S31: 0.2614 S32: 0.2699 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1325 22.8123 18.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.0058 REMARK 3 T33: 0.0415 T12: -0.0095 REMARK 3 T13: -0.0250 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.3246 L22: 1.9311 REMARK 3 L33: 5.7238 L12: -0.3748 REMARK 3 L13: -0.7177 L23: 0.5968 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: 0.1189 S13: -0.0589 REMARK 3 S21: -0.0124 S22: -0.0581 S23: 0.0891 REMARK 3 S31: 0.3074 S32: -0.1978 S33: -0.0505 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6615 29.6623 22.4517 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.0438 REMARK 3 T33: 0.0796 T12: 0.0003 REMARK 3 T13: -0.0172 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 5.6141 L22: 2.0850 REMARK 3 L33: 5.8381 L12: 0.0020 REMARK 3 L13: -2.5065 L23: -0.4828 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.0390 S13: -0.0406 REMARK 3 S21: -0.0104 S22: 0.0111 S23: 0.1127 REMARK 3 S31: 0.1600 S32: -0.0734 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4522 33.3550 14.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0383 REMARK 3 T33: 0.0388 T12: -0.0025 REMARK 3 T13: -0.0079 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.6921 L22: 1.3066 REMARK 3 L33: 2.5418 L12: -0.2299 REMARK 3 L13: -0.7376 L23: 0.8332 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.1098 S13: -0.0462 REMARK 3 S21: -0.1069 S22: -0.0197 S23: 0.0602 REMARK 3 S31: 0.1009 S32: -0.0704 S33: 0.0434 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 354 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3220 37.7649 26.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0763 REMARK 3 T33: 0.0541 T12: -0.0225 REMARK 3 T13: -0.0116 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 11.5164 L22: 0.7728 REMARK 3 L33: 1.8803 L12: -0.3607 REMARK 3 L13: -1.5486 L23: 0.4594 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.3412 S13: -0.0284 REMARK 3 S21: 0.0453 S22: 0.0265 S23: -0.1508 REMARK 3 S31: -0.0375 S32: 0.3692 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 367 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0762 45.1510 14.7872 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.0519 REMARK 3 T33: 0.0249 T12: -0.0547 REMARK 3 T13: 0.0101 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.1368 L22: 4.3631 REMARK 3 L33: 2.2909 L12: -1.9107 REMARK 3 L13: 1.4571 L23: -2.9404 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.1125 S13: 0.1355 REMARK 3 S21: 0.0046 S22: -0.0132 S23: -0.1101 REMARK 3 S31: -0.3132 S32: 0.2667 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 378 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8468 43.2297 9.1189 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.0189 REMARK 3 T33: 0.0104 T12: -0.0254 REMARK 3 T13: 0.0138 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.5637 L22: 6.2442 REMARK 3 L33: 2.8314 L12: -1.3646 REMARK 3 L13: -0.1506 L23: 2.4082 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: 0.1149 S13: 0.0556 REMARK 3 S21: -0.4240 S22: -0.1437 S23: -0.0966 REMARK 3 S31: -0.2424 S32: 0.0054 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3462 48.7408 25.2778 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: -0.0273 REMARK 3 T33: 0.0301 T12: -0.0282 REMARK 3 T13: -0.0109 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.0316 L22: 3.8460 REMARK 3 L33: 5.8021 L12: 1.2007 REMARK 3 L13: 1.8094 L23: -0.2195 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: 0.0002 S13: 0.1467 REMARK 3 S21: 0.3705 S22: -0.0895 S23: -0.0208 REMARK 3 S31: -0.5437 S32: 0.0787 S33: 0.1529 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 417 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0938 41.2402 12.6317 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.0550 REMARK 3 T33: 0.0484 T12: -0.0024 REMARK 3 T13: -0.0206 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.5180 L22: 2.2094 REMARK 3 L33: 6.3906 L12: -1.0655 REMARK 3 L13: 0.7412 L23: -0.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.3105 S13: -0.0558 REMARK 3 S21: -0.4632 S22: -0.0865 S23: 0.1282 REMARK 3 S31: -0.1279 S32: -0.3512 S33: 0.0454 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 418 A 431 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2296 41.3308 34.5037 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0277 REMARK 3 T33: 0.0368 T12: -0.0381 REMARK 3 T13: -0.0132 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.8280 L22: 0.4972 REMARK 3 L33: 6.6105 L12: -0.3990 REMARK 3 L13: 2.9107 L23: -1.6732 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.0865 S13: 0.1345 REMARK 3 S21: 0.1035 S22: -0.1133 S23: -0.1126 REMARK 3 S31: -0.2040 S32: 0.5364 S33: 0.1546 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 448 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4234 42.3465 32.7587 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0376 REMARK 3 T33: 0.0329 T12: 0.0012 REMARK 3 T13: 0.0013 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 4.8162 L22: 0.6336 REMARK 3 L33: 5.7838 L12: -0.2617 REMARK 3 L13: 4.6554 L23: 0.6315 REMARK 3 S TENSOR REMARK 3 S11: -0.1160 S12: -0.2311 S13: 0.1672 REMARK 3 S21: 0.0762 S22: -0.0444 S23: 0.0786 REMARK 3 S31: -0.2209 S32: -0.4162 S33: 0.1603 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 449 A 480 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3604 33.2057 31.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0328 REMARK 3 T33: 0.0478 T12: -0.0171 REMARK 3 T13: 0.0024 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.9081 L22: 0.7879 REMARK 3 L33: 1.9535 L12: -0.1154 REMARK 3 L13: 0.4758 L23: -0.2376 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0584 S13: 0.0042 REMARK 3 S21: 0.0873 S22: 0.0117 S23: 0.0779 REMARK 3 S31: 0.0006 S32: -0.1789 S33: -0.0200 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 481 A 488 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5653 30.9194 45.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1852 REMARK 3 T33: 0.1733 T12: 0.0228 REMARK 3 T13: -0.0322 T23: 0.1365 REMARK 3 L TENSOR REMARK 3 L11: 0.1206 L22: 6.5709 REMARK 3 L33: 55.9768 L12: -0.4458 REMARK 3 L13: 1.7114 L23: 6.1600 REMARK 3 S TENSOR REMARK 3 S11: 0.1760 S12: -0.4354 S13: -0.3929 REMARK 3 S21: -0.6028 S22: 0.6640 S23: 0.0571 REMARK 3 S31: 2.3662 S32: -0.9001 S33: -0.8400 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 489 A 505 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0027 22.1231 36.1322 REMARK 3 T TENSOR REMARK 3 T11: 0.1063 T22: 0.0108 REMARK 3 T33: 0.0272 T12: -0.0336 REMARK 3 T13: -0.0225 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.3322 L22: 1.5713 REMARK 3 L33: 4.5103 L12: -0.0942 REMARK 3 L13: 0.5168 L23: 0.7456 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.0549 S13: -0.0114 REMARK 3 S21: 0.1400 S22: 0.0679 S23: 0.0613 REMARK 3 S31: 0.3520 S32: -0.2377 S33: -0.1032 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 506 A 520 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3909 32.3189 43.7345 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0484 REMARK 3 T33: 0.0349 T12: -0.0222 REMARK 3 T13: -0.0047 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.8167 L22: 4.2411 REMARK 3 L33: 3.5830 L12: -1.5674 REMARK 3 L13: -0.0237 L23: 1.0222 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.1796 S13: 0.0076 REMARK 3 S21: 0.2227 S22: 0.0770 S23: -0.0310 REMARK 3 S31: 0.1027 S32: 0.0241 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 521 A 525 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1921 41.0810 46.1748 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0661 REMARK 3 T33: 0.0130 T12: 0.1126 REMARK 3 T13: 0.0496 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 17.2668 L22: 11.0456 REMARK 3 L33: 9.7138 L12: -8.3811 REMARK 3 L13: 1.7055 L23: -7.4300 REMARK 3 S TENSOR REMARK 3 S11: -0.3622 S12: -0.8747 S13: 1.0768 REMARK 3 S21: 0.8289 S22: 0.3034 S23: 0.0552 REMARK 3 S31: -0.6793 S32: -0.6990 S33: 0.0588 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 256-262, 314-323 AND 407-410 ARE DISORDERED. REMARK 4 REMARK 4 3ZM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40770 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B7O REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-22 % (W/V) PEG3350, 0.1-0.2 M REMARK 280 SODIUM CITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 256 REMARK 465 GLN A 257 REMARK 465 GLU A 258 REMARK 465 CYS A 259 REMARK 465 LYS A 260 REMARK 465 LEU A 261 REMARK 465 LEU A 262 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 GLY A 407 REMARK 465 GLN A 408 REMARK 465 GLY A 409 REMARK 465 ASN A 410 REMARK 465 GLN A 526 REMARK 465 ARG A 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU A 439 CE2 PHE A 469 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 343 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 480 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 480 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 504 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 245 35.00 -95.44 REMARK 500 LYS A 389 139.35 -171.57 REMARK 500 CYS A 486 -147.35 -41.12 REMARK 500 VAL A 505 99.82 69.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZM1 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN SHP2 REMARK 900 RELATED ID: 3ZM2 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN SHP2 REMARK 900 RELATED ID: 3ZM3 RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN SHP2 DBREF 3ZM0 A 248 527 UNP Q06124 PTN11_HUMAN 248 527 SEQADV 3ZM0 GLY A 244 UNP Q06124 EXPRESSION TAG SEQADV 3ZM0 ALA A 245 UNP Q06124 EXPRESSION TAG SEQADV 3ZM0 HIS A 246 UNP Q06124 EXPRESSION TAG SEQADV 3ZM0 MET A 247 UNP Q06124 EXPRESSION TAG SEQRES 1 A 284 GLY ALA HIS MET TRP GLU GLU PHE GLU THR LEU GLN GLN SEQRES 2 A 284 GLN GLU CYS LYS LEU LEU TYR SER ARG LYS GLU GLY GLN SEQRES 3 A 284 ARG GLN GLU ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE SEQRES 4 A 284 LEU PRO PHE ASP HIS THR ARG VAL VAL LEU HIS ASP GLY SEQRES 5 A 284 ASP PRO ASN GLU PRO VAL SER ASP TYR ILE ASN ALA ASN SEQRES 6 A 284 ILE ILE MET PRO GLU PHE GLU THR LYS CYS ASN ASN SER SEQRES 7 A 284 LYS PRO LYS LYS SER TYR ILE ALA THR GLN GLY CYS LEU SEQRES 8 A 284 GLN ASN THR VAL ASN ASP PHE TRP ARG MET VAL PHE GLN SEQRES 9 A 284 GLU ASN SER ARG VAL ILE VAL MET THR THR LYS GLU VAL SEQRES 10 A 284 GLU ARG GLY LYS SER LYS CYS VAL LYS TYR TRP PRO ASP SEQRES 11 A 284 GLU TYR ALA LEU LYS GLU TYR GLY VAL MET ARG VAL ARG SEQRES 12 A 284 ASN VAL LYS GLU SER ALA ALA HIS ASP TYR THR LEU ARG SEQRES 13 A 284 GLU LEU LYS LEU SER LYS VAL GLY GLN GLY ASN THR GLU SEQRES 14 A 284 ARG THR VAL TRP GLN TYR HIS PHE ARG THR TRP PRO ASP SEQRES 15 A 284 HIS GLY VAL PRO SER ASP PRO GLY GLY VAL LEU ASP PHE SEQRES 16 A 284 LEU GLU GLU VAL HIS HIS LYS GLN GLU SER ILE MET ASP SEQRES 17 A 284 ALA GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY SEQRES 18 A 284 ARG THR GLY THR PHE ILE VAL ILE ASP ILE LEU ILE ASP SEQRES 19 A 284 ILE ILE ARG GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL SEQRES 20 A 284 PRO LYS THR ILE GLN MET VAL ARG SER GLN ARG SER GLY SEQRES 21 A 284 MET VAL GLN THR GLU ALA GLN TYR ARG PHE ILE TYR MET SEQRES 22 A 284 ALA VAL GLN HIS TYR ILE GLU THR LEU GLN ARG FORMUL 2 HOH *206(H2 O) HELIX 1 1 GLU A 250 GLN A 255 5 6 HELIX 2 2 ARG A 265 ARG A 270 1 6 HELIX 3 3 GLN A 271 ASN A 277 5 7 HELIX 4 4 PHE A 285 HIS A 287 5 3 HELIX 5 5 LEU A 334 ASN A 336 5 3 HELIX 6 6 THR A 337 ASN A 349 1 13 HELIX 7 7 PRO A 432 SER A 448 1 17 HELIX 8 8 ILE A 463 GLY A 483 1 21 HELIX 9 9 ASP A 489 SER A 499 1 11 HELIX 10 10 THR A 507 LEU A 525 1 19 SHEET 1 AA 9 ARG A 289 VAL A 291 0 SHEET 2 AA 9 TYR A 304 ILE A 310 -1 N ILE A 305 O VAL A 290 SHEET 3 AA 9 TYR A 327 GLN A 331 -1 O TYR A 327 N ILE A 310 SHEET 4 AA 9 VAL A 455 CYS A 459 1 O VAL A 455 N ILE A 328 SHEET 5 AA 9 VAL A 352 MET A 355 1 O VAL A 352 N VAL A 456 SHEET 6 AA 9 ARG A 413 PHE A 420 1 O TRP A 416 N ILE A 353 SHEET 7 AA 9 TYR A 396 LYS A 405 -1 O THR A 397 N HIS A 419 SHEET 8 AA 9 MET A 383 ALA A 392 -1 O ARG A 384 N SER A 404 SHEET 9 AA 9 ALA A 376 TYR A 380 -1 O ALA A 376 N ASN A 387 SHEET 1 AB 2 VAL A 360 GLU A 361 0 SHEET 2 AB 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 CISPEP 1 CYS A 486 ASP A 487 0 -19.35 CRYST1 40.216 42.257 49.197 72.52 81.63 74.73 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024866 -0.006789 -0.001866 0.00000 SCALE2 0.000000 0.024531 -0.007004 0.00000 SCALE3 0.000000 0.000000 0.021366 0.00000