HEADER TRANSFERASE 07-FEB-13 3ZMB TITLE NATIVE STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA PA01, WITH BOUND FRAGMENT SPB02696. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLTRANSTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 5 EC: 2.5.1.10; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FRAGMENT COMPLEX WITH SPB02696. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET VECTOR WITH N-TERMINAL HIS KEYWDS TRANSFERASE, MAYBRIDGE FRAGMENT LIBRARY EXPDTA X-RAY DIFFRACTION AUTHOR J.W.SCHMIDBERGER,R.SCHNELL,G.SCHNEIDER REVDAT 4 20-DEC-23 3ZMB 1 REMARK REVDAT 3 25-MAR-15 3ZMB 1 JRNL REVDAT 2 11-MAR-15 3ZMB 1 JRNL REVDAT 1 26-FEB-14 3ZMB 0 JRNL AUTH J.W.SCHMIDBERGER,R.SCHNELL,G.SCHNEIDER JRNL TITL STRUCTURAL CHARACTERIZATION OF SUBSTRATE AND INHIBITOR JRNL TITL 2 BINDING TO FARNESYL PYROPHOSPHATE SYNTHASE FROM PSEUDOMONAS JRNL TITL 3 AERUGINOSA JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 721 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25760619 JRNL DOI 10.1107/S1399004715001121 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 41464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.4440 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.4360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 609 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : -1.11000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.895 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4250 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4127 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5769 ; 1.662 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9400 ; 1.177 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 5.472 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;32.993 ;23.089 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;14.276 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;20.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4909 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1806 ; 0.278 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3562 ; 0.219 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2131 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2244 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 92 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.242 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.325 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 165 TO 166 OF A CHAIN MISSING (DISORDERED). REMARK 3 RESIDUES 229 TO 241 OF BOTH A AND B CHAINS MISSING (DISORDERED REMARK 3 LOOP). REMARK 4 REMARK 4 3ZMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00319 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43864 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 3ZCD REMARK 200 REMARK 200 REMARK: DATA IS A FRAGMENT COMPLEX DATA SET REFINED AGAINST REMARK 200 ORIGINAL FREE R FLAGS OF NATIVE STRUCTURE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 20% PEG6000, 0.1 M TRIS REMARK 280 PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.78000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.42000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.78000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.42000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.75000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.78000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.42000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.75000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.78000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.42000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 165 REMARK 465 VAL A 166 REMARK 465 SER A 229 REMARK 465 ASP A 230 REMARK 465 THR A 231 REMARK 465 ALA A 232 REMARK 465 THR A 233 REMARK 465 LEU A 234 REMARK 465 GLY A 235 REMARK 465 LYS A 236 REMARK 465 THR A 237 REMARK 465 GLN A 238 REMARK 465 GLY A 239 REMARK 465 LYS A 240 REMARK 465 ASP A 241 REMARK 465 GLN A 242 REMARK 465 ALA A 243 REMARK 465 HIS A 244 REMARK 465 ASN A 245 REMARK 465 LYS A 246 REMARK 465 ASN A 295 REMARK 465 SER B 229 REMARK 465 ASP B 230 REMARK 465 THR B 231 REMARK 465 ALA B 232 REMARK 465 THR B 233 REMARK 465 LEU B 234 REMARK 465 GLY B 235 REMARK 465 LYS B 236 REMARK 465 THR B 237 REMARK 465 GLN B 238 REMARK 465 GLY B 239 REMARK 465 LYS B 240 REMARK 465 ASP B 241 REMARK 465 GLN B 242 REMARK 465 ALA B 243 REMARK 465 HIS B 244 REMARK 465 ASN B 245 REMARK 465 LYS B 246 REMARK 465 GLU B 292 REMARK 465 ARG B 293 REMARK 465 ARG B 294 REMARK 465 ASN B 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT 6H6 A 1296 O HOH A 2080 2.09 REMARK 500 OE1 GLU A 200 O HOH A 2240 2.11 REMARK 500 OE1 GLU A 186 O HOH A 2230 2.11 REMARK 500 OE1 GLU A 212 O HOH A 2251 2.15 REMARK 500 O HOH A 2255 O HOH A 2261 2.15 REMARK 500 OD1 ASP A 18 NH1 ARG A 36 2.16 REMARK 500 OE1 GLU B 106 O HOH B 2170 2.16 REMARK 500 NE ARG B 129 O HOH B 2183 2.16 REMARK 500 O HOH B 2127 O HOH B 2134 2.17 REMARK 500 O HOH B 2185 O HOH B 2190 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2019 O HOH A 2019 3554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 30.51 -99.21 REMARK 500 MET A 88 -110.73 -109.31 REMARK 500 PHE A 104 -100.50 -119.08 REMARK 500 MET B 88 -108.79 -108.27 REMARK 500 PHE B 104 -96.53 -111.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2005 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A2007 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B2292 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH B2293 DISTANCE = 7.37 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 3-(2-OXO-1,3-BENZOXAZOL-3(2H)-YL)PROPANOIC ACID (6H6): REMARK 600 SPB02696 IS A FRAGMENT FROM THE MAYBRIDGE FRAGMENT REMARK 600 LIBRARY. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6H6 A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6H6 A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6H6 B 1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1293 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZMC RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE FROM REMARK 900 PSEUDOMONAS AERUGINOSA PA01, WITH BOUND SUBSTRATE MOLECULE GERANYL REMARK 900 PYROPHOSPHATE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS AN N-TERMINAL ADDITIONAL SERINE RESULTING FROM REMARK 999 CLONING AND CLEAVAGE OF HIS TAG. DBREF 3ZMB A 1 295 UNP Q9HWY4 Q9HWY4_PSEAE 1 295 DBREF 3ZMB B 1 295 UNP Q9HWY4 Q9HWY4_PSEAE 1 295 SEQADV 3ZMB SER A 0 UNP Q9HWY4 EXPRESSION TAG SEQADV 3ZMB SER B 0 UNP Q9HWY4 EXPRESSION TAG SEQRES 1 A 296 SER MET ILE ALA ALA TYR GLN ALA ARG CYS GLN ALA ARG SEQRES 2 A 296 VAL ASP ALA ALA LEU ASP ALA LEU PHE VAL ALA PRO ARG SEQRES 3 A 296 GLU GLU LEU GLN ARG LEU TYR GLU ALA MET ARG TYR SER SEQRES 4 A 296 VAL MET ASN GLY GLY LYS ARG VAL ARG PRO LEU LEU ALA SEQRES 5 A 296 TYR ALA ALA CYS GLU ALA LEU GLY GLY ALA PRO GLN ARG SEQRES 6 A 296 ALA ASP ALA ALA ALA CYS ALA VAL GLU LEU ILE HIS ALA SEQRES 7 A 296 TYR SER LEU VAL HIS ASP ASP LEU PRO ALA MET ASP ASP SEQRES 8 A 296 ASP ASP LEU ARG ARG GLY GLN PRO THR THR HIS ARG ALA SEQRES 9 A 296 PHE ASP GLU ALA THR ALA ILE LEU ALA ALA ASP GLY LEU SEQRES 10 A 296 GLN ALA LEU ALA PHE GLU VAL LEU ALA ASP THR ARG ARG SEQRES 11 A 296 ASN PRO GLN GLU HIS ALA VAL CYS LEU GLU MET LEU THR SEQRES 12 A 296 ARG LEU ALA ARG ALA ALA GLY SER ALA GLY MET VAL GLY SEQRES 13 A 296 GLY GLN ALA ILE ASP LEU GLY SER VAL GLY VAL ALA LEU SEQRES 14 A 296 ASP GLN ALA ALA LEU GLU VAL MET HIS ARG HIS LYS THR SEQRES 15 A 296 GLY ALA LEU ILE GLU ALA SER VAL ARG LEU GLY ALA LEU SEQRES 16 A 296 ALA SER GLY ARG ALA GLU PRO ALA SER LEU ALA ALA LEU SEQRES 17 A 296 GLU ARG TYR ALA GLU ALA ILE GLY LEU ALA PHE GLN VAL SEQRES 18 A 296 GLN ASP ASP ILE LEU ASP VAL GLU SER ASP THR ALA THR SEQRES 19 A 296 LEU GLY LYS THR GLN GLY LYS ASP GLN ALA HIS ASN LYS SEQRES 20 A 296 PRO THR TYR PRO ALA LEU LEU GLY LEU GLU ALA ALA LYS SEQRES 21 A 296 GLY TYR ALA LEU GLU LEU ARG ASP LEU ALA LEU ALA ALA SEQRES 22 A 296 LEU ASP GLY PHE PRO PRO SER ALA ASP PRO LEU ARG GLN SEQRES 23 A 296 LEU ALA ARG TYR ILE VAL GLU ARG ARG ASN SEQRES 1 B 296 SER MET ILE ALA ALA TYR GLN ALA ARG CYS GLN ALA ARG SEQRES 2 B 296 VAL ASP ALA ALA LEU ASP ALA LEU PHE VAL ALA PRO ARG SEQRES 3 B 296 GLU GLU LEU GLN ARG LEU TYR GLU ALA MET ARG TYR SER SEQRES 4 B 296 VAL MET ASN GLY GLY LYS ARG VAL ARG PRO LEU LEU ALA SEQRES 5 B 296 TYR ALA ALA CYS GLU ALA LEU GLY GLY ALA PRO GLN ARG SEQRES 6 B 296 ALA ASP ALA ALA ALA CYS ALA VAL GLU LEU ILE HIS ALA SEQRES 7 B 296 TYR SER LEU VAL HIS ASP ASP LEU PRO ALA MET ASP ASP SEQRES 8 B 296 ASP ASP LEU ARG ARG GLY GLN PRO THR THR HIS ARG ALA SEQRES 9 B 296 PHE ASP GLU ALA THR ALA ILE LEU ALA ALA ASP GLY LEU SEQRES 10 B 296 GLN ALA LEU ALA PHE GLU VAL LEU ALA ASP THR ARG ARG SEQRES 11 B 296 ASN PRO GLN GLU HIS ALA VAL CYS LEU GLU MET LEU THR SEQRES 12 B 296 ARG LEU ALA ARG ALA ALA GLY SER ALA GLY MET VAL GLY SEQRES 13 B 296 GLY GLN ALA ILE ASP LEU GLY SER VAL GLY VAL ALA LEU SEQRES 14 B 296 ASP GLN ALA ALA LEU GLU VAL MET HIS ARG HIS LYS THR SEQRES 15 B 296 GLY ALA LEU ILE GLU ALA SER VAL ARG LEU GLY ALA LEU SEQRES 16 B 296 ALA SER GLY ARG ALA GLU PRO ALA SER LEU ALA ALA LEU SEQRES 17 B 296 GLU ARG TYR ALA GLU ALA ILE GLY LEU ALA PHE GLN VAL SEQRES 18 B 296 GLN ASP ASP ILE LEU ASP VAL GLU SER ASP THR ALA THR SEQRES 19 B 296 LEU GLY LYS THR GLN GLY LYS ASP GLN ALA HIS ASN LYS SEQRES 20 B 296 PRO THR TYR PRO ALA LEU LEU GLY LEU GLU ALA ALA LYS SEQRES 21 B 296 GLY TYR ALA LEU GLU LEU ARG ASP LEU ALA LEU ALA ALA SEQRES 22 B 296 LEU ASP GLY PHE PRO PRO SER ALA ASP PRO LEU ARG GLN SEQRES 23 B 296 LEU ALA ARG TYR ILE VAL GLU ARG ARG ASN HET 6H6 A1295 15 HET 6H6 A1296 15 HET DMS A1297 4 HET 6H6 B1292 15 HET CL B1293 1 HETNAM 6H6 3-(2-OXO-1,3-BENZOXAZOL-3(2H)-YL)PROPANOIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION FORMUL 3 6H6 3(C10 H9 N O4) FORMUL 5 DMS C2 H6 O S FORMUL 7 CL CL 1- FORMUL 8 HOH *609(H2 O) HELIX 1 1 MET A 1 ALA A 19 1 19 HELIX 2 2 ARG A 25 GLU A 27 5 3 HELIX 3 3 LEU A 28 MET A 40 1 13 HELIX 4 4 ARG A 45 LEU A 58 1 14 HELIX 5 5 ALA A 61 ARG A 64 5 4 HELIX 6 6 ALA A 65 ASP A 84 1 20 HELIX 7 7 THR A 99 PHE A 104 1 6 HELIX 8 8 ASP A 105 ASP A 126 1 22 HELIX 9 9 GLU A 133 GLY A 149 1 17 HELIX 10 10 GLY A 152 SER A 163 1 12 HELIX 11 11 ASP A 169 THR A 181 1 13 HELIX 12 12 THR A 181 SER A 196 1 16 HELIX 13 13 GLU A 200 VAL A 227 1 28 HELIX 14 14 THR A 248 GLY A 254 1 7 HELIX 15 15 GLY A 254 LEU A 273 1 20 HELIX 16 16 PRO A 277 SER A 279 5 3 HELIX 17 17 ALA A 280 ARG A 293 1 14 HELIX 18 18 SER B 0 ALA B 19 1 20 HELIX 19 19 ARG B 25 GLU B 27 5 3 HELIX 20 20 LEU B 28 MET B 40 1 13 HELIX 21 21 ARG B 45 LEU B 58 1 14 HELIX 22 22 ALA B 61 ARG B 64 5 4 HELIX 23 23 ALA B 65 LEU B 85 1 21 HELIX 24 24 THR B 99 PHE B 104 1 6 HELIX 25 25 ASP B 105 ASP B 126 1 22 HELIX 26 26 GLU B 133 GLY B 149 1 17 HELIX 27 27 GLY B 152 GLY B 162 1 11 HELIX 28 28 ASP B 169 THR B 181 1 13 HELIX 29 29 THR B 181 SER B 196 1 16 HELIX 30 30 GLU B 200 GLU B 228 1 29 HELIX 31 31 THR B 248 GLY B 254 1 7 HELIX 32 32 GLY B 254 LEU B 273 1 20 HELIX 33 33 PRO B 277 SER B 279 5 3 HELIX 34 34 ALA B 280 VAL B 291 1 12 SHEET 1 AA 2 LEU A 93 ARG A 94 0 SHEET 2 AA 2 GLN A 97 PRO A 98 -1 O GLN A 97 N ARG A 94 SHEET 1 BA 2 LEU B 93 ARG B 94 0 SHEET 2 BA 2 GLN B 97 PRO B 98 -1 O GLN B 97 N ARG B 94 CISPEP 1 VAL A 227 GLU A 228 0 -25.33 SITE 1 AC1 5 ALA A 3 GLN A 6 LYS A 44 TYR A 289 SITE 2 AC1 5 HOH A2009 SITE 1 AC2 7 VAL A 46 ARG A 47 ILE A 185 PHE A 218 SITE 2 AC2 7 ILE A 290 HOH A2080 HOH A2084 SITE 1 AC3 5 SER A 79 MET A 153 GLN A 157 LYS A 180 SITE 2 AC3 5 HOH A2316 SITE 1 AC4 4 ALA B 3 LYS B 44 TYR B 289 HOH B2015 SITE 1 AC5 2 ARG B 266 ARG B 288 CRYST1 85.560 98.840 131.500 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007605 0.00000 MTRIX1 1 -0.213800 -0.964500 -0.154900 52.62000 1 MTRIX2 1 -0.965100 0.184000 0.186100 48.90000 1 MTRIX3 1 -0.151000 0.189300 -0.970200 -37.57000 1