data_3ZMH # _entry.id 3ZMH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZMH pdb_00003zmh 10.2210/pdb3zmh/pdb PDBE EBI-55777 ? ? WWPDB D_1290055777 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZMI unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L29' PDB 3ZMJ unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L61' PDB 3ZOT unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L29 (DATA SET 2)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZMH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-02-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vinothkumar, K.R.' 1 ? 'Pierrat, O.A.' 2 ? 'Large, J.M.' 3 ? 'Freeman, M.' 4 ? # _citation.id primary _citation.title ;Structure of rhomboid protease in complex with beta-lactam inhibitors defines the S2' cavity. ; _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1051 _citation.page_last 1058 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 1878-4186 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23665170 _citation.pdbx_database_id_DOI 10.1016/j.str.2013.03.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vinothkumar, K.R.' 1 ? primary 'Pierrat, O.A.' 2 ? primary 'Large, J.M.' 3 ? primary 'Freeman, M.' 4 ? # _cell.entry_id 3ZMH _cell.length_a 110.150 _cell.length_b 110.150 _cell.length_c 128.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZMH _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RHOMBOID PROTEASE GLPG' 20343.133 1 3.4.21.105 ? 'CORE TM DOMAIN, RESIDUES 91-270' 'THE BETA LACTAM RING IS OPENED BY THE NUCLEOPHILIC ATTACK OF S201 ON C2-O1 TO FORM A COVALENT BOND' 2 non-polymer syn 'cyclopentyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' 261.316 1 ? ? ? ? 3 non-polymer syn 'CYCLOPENTYL 2-OXO-4-PHENYLAZETIDINE-1-CARBOXYLATE' 259.300 1 ? ? ? ? 4 non-polymer man 'nonyl beta-D-glucopyranoside' 306.395 6 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 6 water nat water 18.015 38 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GLPG, INTRAMEMBRANE SERINE PROTEASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG SGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMA NGAHIAGLAVGLAMAFVDSL ; _entity_poly.pdbx_seq_one_letter_code_can ;ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG SGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMA NGAHIAGLAVGLAMAFVDSL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 ALA n 1 4 GLY n 1 5 PRO n 1 6 VAL n 1 7 THR n 1 8 TRP n 1 9 VAL n 1 10 MET n 1 11 MET n 1 12 ILE n 1 13 ALA n 1 14 CYS n 1 15 VAL n 1 16 VAL n 1 17 VAL n 1 18 PHE n 1 19 ILE n 1 20 ALA n 1 21 MET n 1 22 GLN n 1 23 ILE n 1 24 LEU n 1 25 GLY n 1 26 ASP n 1 27 GLN n 1 28 GLU n 1 29 VAL n 1 30 MET n 1 31 LEU n 1 32 TRP n 1 33 LEU n 1 34 ALA n 1 35 TRP n 1 36 PRO n 1 37 PHE n 1 38 ASP n 1 39 PRO n 1 40 THR n 1 41 LEU n 1 42 LYS n 1 43 PHE n 1 44 GLU n 1 45 PHE n 1 46 TRP n 1 47 ARG n 1 48 TYR n 1 49 PHE n 1 50 THR n 1 51 HIS n 1 52 ALA n 1 53 LEU n 1 54 MET n 1 55 HIS n 1 56 PHE n 1 57 SER n 1 58 LEU n 1 59 MET n 1 60 HIS n 1 61 ILE n 1 62 LEU n 1 63 PHE n 1 64 ASN n 1 65 LEU n 1 66 LEU n 1 67 TRP n 1 68 TRP n 1 69 TRP n 1 70 TYR n 1 71 LEU n 1 72 GLY n 1 73 GLY n 1 74 ALA n 1 75 VAL n 1 76 GLU n 1 77 LYS n 1 78 ARG n 1 79 LEU n 1 80 GLY n 1 81 SER n 1 82 GLY n 1 83 LYS n 1 84 LEU n 1 85 ILE n 1 86 VAL n 1 87 ILE n 1 88 THR n 1 89 LEU n 1 90 ILE n 1 91 SER n 1 92 ALA n 1 93 LEU n 1 94 LEU n 1 95 SER n 1 96 GLY n 1 97 TYR n 1 98 VAL n 1 99 GLN n 1 100 GLN n 1 101 LYS n 1 102 PHE n 1 103 SER n 1 104 GLY n 1 105 PRO n 1 106 TRP n 1 107 PHE n 1 108 GLY n 1 109 GLY n 1 110 LEU n 1 111 SER n 1 112 GLY n 1 113 VAL n 1 114 VAL n 1 115 TYR n 1 116 ALA n 1 117 LEU n 1 118 MET n 1 119 GLY n 1 120 TYR n 1 121 VAL n 1 122 TRP n 1 123 LEU n 1 124 ARG n 1 125 GLY n 1 126 GLU n 1 127 ARG n 1 128 ASP n 1 129 PRO n 1 130 GLN n 1 131 SER n 1 132 GLY n 1 133 ILE n 1 134 TYR n 1 135 LEU n 1 136 GLN n 1 137 ARG n 1 138 GLY n 1 139 LEU n 1 140 ILE n 1 141 ILE n 1 142 PHE n 1 143 ALA n 1 144 LEU n 1 145 ILE n 1 146 TRP n 1 147 ILE n 1 148 VAL n 1 149 ALA n 1 150 GLY n 1 151 TRP n 1 152 PHE n 1 153 ASP n 1 154 LEU n 1 155 PHE n 1 156 GLY n 1 157 MET n 1 158 SER n 1 159 MET n 1 160 ALA n 1 161 ASN n 1 162 GLY n 1 163 ALA n 1 164 HIS n 1 165 ILE n 1 166 ALA n 1 167 GLY n 1 168 LEU n 1 169 ALA n 1 170 VAL n 1 171 GLY n 1 172 LEU n 1 173 ALA n 1 174 MET n 1 175 ALA n 1 176 PHE n 1 177 VAL n 1 178 ASP n 1 179 SER n 1 180 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLPG_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P09391 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZMH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 180 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P09391 _struct_ref_seq.db_align_beg 91 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 270 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 91 _struct_ref_seq.pdbx_auth_seq_align_end 270 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 78C non-polymer . 'CYCLOPENTYL 2-OXO-4-PHENYLAZETIDINE-1-CARBOXYLATE' ? 'C15 H17 N O3' 259.300 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BNG D-saccharide n 'nonyl beta-D-glucopyranoside' 'Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside' 'C15 H30 O6' 306.395 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 L62 non-polymer . 'cyclopentyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' ? 'C15 H19 N O3' 261.316 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZMH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.56 _exptl_crystal.density_percent_sol 65.6 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2M NACL, 0.1M BIS-TRIS PH7.0, 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-08-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9687 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength 0.9687 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZMH _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 76.62 _reflns.d_resolution_high 2.30 _reflns.number_obs 13547 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.90 _reflns.B_iso_Wilson_estimate 34.18 _reflns.pdbx_redundancy 5.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.68 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.60 _reflns_shell.pdbx_redundancy 6.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZMH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13542 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 76.622 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs 99.86 _refine.ls_R_factor_obs 0.1900 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1881 _refine.ls_R_factor_R_free 0.2288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 672 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 34.7 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ;BNG 405 IS IN SPECIAL POSITION. L62 IS COVALENTLY LINKED TO S201. EXTERNAL RESTRAINTS USED BETWEEN C2 OF 401 AND CL 409. A RACEMIC MIXTURE OF L62 WAS USED IN THE SOAKS. NOTE THAT THE EXTERNALLY BOUND BETA LACTAM HAS THE OPPOSITE CHIRALITY OF THE BETA LACTAM BOUND TO S201. ; _refine.pdbx_starting_model 'PDB ENTRY 2XOV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.25 _refine.pdbx_overall_phase_error 21.76 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1425 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 81 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 1544 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 76.622 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1576 'X-RAY DIFFRACTION' ? f_angle_d 1.022 ? ? 2132 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.069 ? ? 541 'X-RAY DIFFRACTION' ? f_chiral_restr 0.075 ? ? 225 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 247 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.3000 2.4776 2551 0.2011 100.00 0.2447 . . 142 . . 'X-RAY DIFFRACTION' . 2.4776 2.7270 2526 0.1755 100.00 0.2173 . . 135 . . 'X-RAY DIFFRACTION' . 2.7270 3.1216 2529 0.1667 100.00 0.2446 . . 145 . . 'X-RAY DIFFRACTION' . 3.1216 3.9328 2602 0.1791 100.00 0.2154 . . 117 . . 'X-RAY DIFFRACTION' . 3.9328 76.6642 2662 0.2024 100.00 0.2290 . . 133 . . # _struct.entry_id 3ZMH _struct.title 'Structure of E.coli rhomboid protease GlpG in complex with monobactam L62' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZMH _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, INTRA-MEMBRANE PROTEASE, ACYL ENZYME, BETA LACTAMS, ANITBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 5 ? L N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? GLY A 25 ? GLY A 94 GLY A 115 1 ? 22 HELX_P HELX_P2 2 GLY A 25 ? ALA A 34 ? GLY A 115 ALA A 124 1 ? 10 HELX_P HELX_P3 3 ASP A 38 ? LYS A 42 ? ASP A 128 LYS A 132 5 ? 5 HELX_P HELX_P4 4 TRP A 46 ? HIS A 51 ? TRP A 136 HIS A 141 1 ? 6 HELX_P HELX_P5 5 ALA A 52 ? MET A 54 ? ALA A 142 MET A 144 5 ? 3 HELX_P HELX_P6 6 SER A 57 ? GLY A 80 ? SER A 147 GLY A 170 1 ? 24 HELX_P HELX_P7 7 GLY A 80 ? GLY A 104 ? GLY A 170 GLY A 194 1 ? 25 HELX_P HELX_P8 8 LEU A 110 ? ASP A 128 ? LEU A 200 ASP A 218 1 ? 19 HELX_P HELX_P9 9 PRO A 129 ? GLY A 132 ? PRO A 219 GLY A 222 5 ? 4 HELX_P HELX_P10 10 GLN A 136 ? PHE A 152 ? GLN A 226 PHE A 242 1 ? 17 HELX_P HELX_P11 11 ALA A 160 ? SER A 179 ? ALA A 250 SER A 269 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id L62 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C2 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id L62 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.394 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3ZMH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZMH _atom_sites.fract_transf_matrix[1][1] 0.009079 _atom_sites.fract_transf_matrix[1][2] 0.005241 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010483 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007774 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 91 91 GLU GLU A . n A 1 2 ARG 2 92 92 ARG ARG A . n A 1 3 ALA 3 93 93 ALA ALA A . n A 1 4 GLY 4 94 94 GLY GLY A . n A 1 5 PRO 5 95 95 PRO PRO A . n A 1 6 VAL 6 96 96 VAL VAL A . n A 1 7 THR 7 97 97 THR THR A . n A 1 8 TRP 8 98 98 TRP TRP A . n A 1 9 VAL 9 99 99 VAL VAL A . n A 1 10 MET 10 100 100 MET MET A . n A 1 11 MET 11 101 101 MET MET A . n A 1 12 ILE 12 102 102 ILE ILE A . n A 1 13 ALA 13 103 103 ALA ALA A . n A 1 14 CYS 14 104 104 CYS CYS A . n A 1 15 VAL 15 105 105 VAL VAL A . n A 1 16 VAL 16 106 106 VAL VAL A . n A 1 17 VAL 17 107 107 VAL VAL A . n A 1 18 PHE 18 108 108 PHE PHE A . n A 1 19 ILE 19 109 109 ILE ILE A . n A 1 20 ALA 20 110 110 ALA ALA A . n A 1 21 MET 21 111 111 MET MET A . n A 1 22 GLN 22 112 112 GLN GLN A . n A 1 23 ILE 23 113 113 ILE ILE A . n A 1 24 LEU 24 114 114 LEU LEU A . n A 1 25 GLY 25 115 115 GLY GLY A . n A 1 26 ASP 26 116 116 ASP ASP A . n A 1 27 GLN 27 117 117 GLN GLN A . n A 1 28 GLU 28 118 118 GLU GLU A . n A 1 29 VAL 29 119 119 VAL VAL A . n A 1 30 MET 30 120 120 MET MET A . n A 1 31 LEU 31 121 121 LEU LEU A . n A 1 32 TRP 32 122 122 TRP TRP A . n A 1 33 LEU 33 123 123 LEU LEU A . n A 1 34 ALA 34 124 124 ALA ALA A . n A 1 35 TRP 35 125 125 TRP TRP A . n A 1 36 PRO 36 126 126 PRO PRO A . n A 1 37 PHE 37 127 127 PHE PHE A . n A 1 38 ASP 38 128 128 ASP ASP A . n A 1 39 PRO 39 129 129 PRO PRO A . n A 1 40 THR 40 130 130 THR THR A . n A 1 41 LEU 41 131 131 LEU LEU A . n A 1 42 LYS 42 132 132 LYS LYS A . n A 1 43 PHE 43 133 133 PHE PHE A . n A 1 44 GLU 44 134 134 GLU GLU A . n A 1 45 PHE 45 135 135 PHE PHE A . n A 1 46 TRP 46 136 136 TRP TRP A . n A 1 47 ARG 47 137 137 ARG ARG A . n A 1 48 TYR 48 138 138 TYR TYR A . n A 1 49 PHE 49 139 139 PHE PHE A . n A 1 50 THR 50 140 140 THR THR A . n A 1 51 HIS 51 141 141 HIS HIS A . n A 1 52 ALA 52 142 142 ALA ALA A . n A 1 53 LEU 53 143 143 LEU LEU A . n A 1 54 MET 54 144 144 MET MET A . n A 1 55 HIS 55 145 145 HIS HIS A . n A 1 56 PHE 56 146 146 PHE PHE A . n A 1 57 SER 57 147 147 SER SER A . n A 1 58 LEU 58 148 148 LEU LEU A . n A 1 59 MET 59 149 149 MET MET A . n A 1 60 HIS 60 150 150 HIS HIS A . n A 1 61 ILE 61 151 151 ILE ILE A . n A 1 62 LEU 62 152 152 LEU LEU A . n A 1 63 PHE 63 153 153 PHE PHE A . n A 1 64 ASN 64 154 154 ASN ASN A . n A 1 65 LEU 65 155 155 LEU LEU A . n A 1 66 LEU 66 156 156 LEU LEU A . n A 1 67 TRP 67 157 157 TRP TRP A . n A 1 68 TRP 68 158 158 TRP TRP A . n A 1 69 TRP 69 159 159 TRP TRP A . n A 1 70 TYR 70 160 160 TYR TYR A . n A 1 71 LEU 71 161 161 LEU LEU A . n A 1 72 GLY 72 162 162 GLY GLY A . n A 1 73 GLY 73 163 163 GLY GLY A . n A 1 74 ALA 74 164 164 ALA ALA A . n A 1 75 VAL 75 165 165 VAL VAL A . n A 1 76 GLU 76 166 166 GLU GLU A . n A 1 77 LYS 77 167 167 LYS LYS A . n A 1 78 ARG 78 168 168 ARG ARG A . n A 1 79 LEU 79 169 169 LEU LEU A . n A 1 80 GLY 80 170 170 GLY GLY A . n A 1 81 SER 81 171 171 SER SER A . n A 1 82 GLY 82 172 172 GLY GLY A . n A 1 83 LYS 83 173 173 LYS LYS A . n A 1 84 LEU 84 174 174 LEU LEU A . n A 1 85 ILE 85 175 175 ILE ILE A . n A 1 86 VAL 86 176 176 VAL VAL A . n A 1 87 ILE 87 177 177 ILE ILE A . n A 1 88 THR 88 178 178 THR THR A . n A 1 89 LEU 89 179 179 LEU LEU A . n A 1 90 ILE 90 180 180 ILE ILE A . n A 1 91 SER 91 181 181 SER SER A . n A 1 92 ALA 92 182 182 ALA ALA A . n A 1 93 LEU 93 183 183 LEU LEU A . n A 1 94 LEU 94 184 184 LEU LEU A . n A 1 95 SER 95 185 185 SER SER A . n A 1 96 GLY 96 186 186 GLY GLY A . n A 1 97 TYR 97 187 187 TYR TYR A . n A 1 98 VAL 98 188 188 VAL VAL A . n A 1 99 GLN 99 189 189 GLN GLN A . n A 1 100 GLN 100 190 190 GLN GLN A . n A 1 101 LYS 101 191 191 LYS LYS A . n A 1 102 PHE 102 192 192 PHE PHE A . n A 1 103 SER 103 193 193 SER SER A . n A 1 104 GLY 104 194 194 GLY GLY A . n A 1 105 PRO 105 195 195 PRO PRO A . n A 1 106 TRP 106 196 196 TRP TRP A . n A 1 107 PHE 107 197 197 PHE PHE A . n A 1 108 GLY 108 198 198 GLY GLY A . n A 1 109 GLY 109 199 199 GLY GLY A . n A 1 110 LEU 110 200 200 LEU LEU A . n A 1 111 SER 111 201 201 SER SER A . n A 1 112 GLY 112 202 202 GLY GLY A . n A 1 113 VAL 113 203 203 VAL VAL A . n A 1 114 VAL 114 204 204 VAL VAL A . n A 1 115 TYR 115 205 205 TYR TYR A . n A 1 116 ALA 116 206 206 ALA ALA A . n A 1 117 LEU 117 207 207 LEU LEU A . n A 1 118 MET 118 208 208 MET MET A . n A 1 119 GLY 119 209 209 GLY GLY A . n A 1 120 TYR 120 210 210 TYR TYR A . n A 1 121 VAL 121 211 211 VAL VAL A . n A 1 122 TRP 122 212 212 TRP TRP A . n A 1 123 LEU 123 213 213 LEU LEU A . n A 1 124 ARG 124 214 214 ARG ARG A . n A 1 125 GLY 125 215 215 GLY GLY A . n A 1 126 GLU 126 216 216 GLU GLU A . n A 1 127 ARG 127 217 217 ARG ARG A . n A 1 128 ASP 128 218 218 ASP ASP A . n A 1 129 PRO 129 219 219 PRO PRO A . n A 1 130 GLN 130 220 220 GLN GLN A . n A 1 131 SER 131 221 221 SER SER A . n A 1 132 GLY 132 222 222 GLY GLY A . n A 1 133 ILE 133 223 223 ILE ILE A . n A 1 134 TYR 134 224 224 TYR TYR A . n A 1 135 LEU 135 225 225 LEU LEU A . n A 1 136 GLN 136 226 226 GLN GLN A . n A 1 137 ARG 137 227 227 ARG ARG A . n A 1 138 GLY 138 228 228 GLY GLY A . n A 1 139 LEU 139 229 229 LEU LEU A . n A 1 140 ILE 140 230 230 ILE ILE A . n A 1 141 ILE 141 231 231 ILE ILE A . n A 1 142 PHE 142 232 232 PHE PHE A . n A 1 143 ALA 143 233 233 ALA ALA A . n A 1 144 LEU 144 234 234 LEU LEU A . n A 1 145 ILE 145 235 235 ILE ILE A . n A 1 146 TRP 146 236 236 TRP TRP A . n A 1 147 ILE 147 237 237 ILE ILE A . n A 1 148 VAL 148 238 238 VAL VAL A . n A 1 149 ALA 149 239 239 ALA ALA A . n A 1 150 GLY 150 240 240 GLY GLY A . n A 1 151 TRP 151 241 241 TRP TRP A . n A 1 152 PHE 152 242 242 PHE PHE A . n A 1 153 ASP 153 243 243 ASP ASP A . n A 1 154 LEU 154 244 244 LEU LEU A . n A 1 155 PHE 155 245 245 PHE PHE A . n A 1 156 GLY 156 246 246 GLY GLY A . n A 1 157 MET 157 247 247 MET MET A . n A 1 158 SER 158 248 248 SER SER A . n A 1 159 MET 159 249 249 MET MET A . n A 1 160 ALA 160 250 250 ALA ALA A . n A 1 161 ASN 161 251 251 ASN ASN A . n A 1 162 GLY 162 252 252 GLY GLY A . n A 1 163 ALA 163 253 253 ALA ALA A . n A 1 164 HIS 164 254 254 HIS HIS A . n A 1 165 ILE 165 255 255 ILE ILE A . n A 1 166 ALA 166 256 256 ALA ALA A . n A 1 167 GLY 167 257 257 GLY GLY A . n A 1 168 LEU 168 258 258 LEU LEU A . n A 1 169 ALA 169 259 259 ALA ALA A . n A 1 170 VAL 170 260 260 VAL VAL A . n A 1 171 GLY 171 261 261 GLY GLY A . n A 1 172 LEU 172 262 262 LEU LEU A . n A 1 173 ALA 173 263 263 ALA ALA A . n A 1 174 MET 174 264 264 MET MET A . n A 1 175 ALA 175 265 265 ALA ALA A . n A 1 176 PHE 176 266 266 PHE PHE A . n A 1 177 VAL 177 267 267 VAL VAL A . n A 1 178 ASP 178 268 268 ASP ASP A . n A 1 179 SER 179 269 269 SER SER A . n A 1 180 LEU 180 270 270 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L62 1 401 401 L62 L62 A . C 3 78C 1 402 402 78C 78C A . D 4 BNG 1 403 403 BNG BNG A . E 4 BNG 1 404 404 BNG BNG A . F 4 BNG 1 405 405 BNG BNG A . G 4 BNG 1 406 406 BNG BNG A . H 4 BNG 1 407 407 BNG BNG A . I 4 BNG 1 408 408 BNG BNG A . J 5 CL 1 409 409 CL CL A . K 5 CL 1 410 410 CL CL A . L 6 HOH 1 2001 2001 HOH HOH A . L 6 HOH 2 2002 2002 HOH HOH A . L 6 HOH 3 2003 2003 HOH HOH A . L 6 HOH 4 2004 2004 HOH HOH A . L 6 HOH 5 2005 2005 HOH HOH A . L 6 HOH 6 2006 2006 HOH HOH A . L 6 HOH 7 2007 2007 HOH HOH A . L 6 HOH 8 2008 2008 HOH HOH A . L 6 HOH 9 2009 2009 HOH HOH A . L 6 HOH 10 2010 2010 HOH HOH A . L 6 HOH 11 2011 2011 HOH HOH A . L 6 HOH 12 2012 2012 HOH HOH A . L 6 HOH 13 2013 2013 HOH HOH A . L 6 HOH 14 2014 2014 HOH HOH A . L 6 HOH 15 2015 2015 HOH HOH A . L 6 HOH 16 2016 2016 HOH HOH A . L 6 HOH 17 2017 2017 HOH HOH A . L 6 HOH 18 2018 2018 HOH HOH A . L 6 HOH 19 2019 2019 HOH HOH A . L 6 HOH 20 2020 2020 HOH HOH A . L 6 HOH 21 2021 2021 HOH HOH A . L 6 HOH 22 2022 2022 HOH HOH A . L 6 HOH 23 2023 2023 HOH HOH A . L 6 HOH 24 2024 2024 HOH HOH A . L 6 HOH 25 2025 2025 HOH HOH A . L 6 HOH 26 2026 2026 HOH HOH A . L 6 HOH 27 2027 2027 HOH HOH A . L 6 HOH 28 2028 2028 HOH HOH A . L 6 HOH 29 2029 2029 HOH HOH A . L 6 HOH 30 2030 2030 HOH HOH A . L 6 HOH 31 2031 2031 HOH HOH A . L 6 HOH 32 2032 2032 HOH HOH A . L 6 HOH 33 2033 2033 HOH HOH A . L 6 HOH 34 2034 2034 HOH HOH A . L 6 HOH 35 2035 2035 HOH HOH A . L 6 HOH 36 2036 2036 HOH HOH A . L 6 HOH 37 2037 2037 HOH HOH A . L 6 HOH 38 2038 2038 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2013-05-29 3 'Structure model' 1 2 2013-08-28 4 'Structure model' 1 3 2019-02-27 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2023-12-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Experimental preparation' 7 4 'Structure model' Other 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' Other 11 5 'Structure model' 'Structure summary' 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Database references' 14 6 'Structure model' 'Refinement description' 15 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' exptl_crystal_grow 3 4 'Structure model' pdbx_database_proc 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' struct_biol 6 4 'Structure model' struct_conn 7 5 'Structure model' chem_comp 8 5 'Structure model' entity 9 5 'Structure model' pdbx_chem_comp_identifier 10 5 'Structure model' pdbx_database_status 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' struct_conn 13 5 'Structure model' struct_site 14 5 'Structure model' struct_site_gen 15 6 'Structure model' chem_comp 16 6 'Structure model' chem_comp_atom 17 6 'Structure model' chem_comp_bond 18 6 'Structure model' database_2 19 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_ISSN' 2 4 'Structure model' '_citation.page_last' 3 4 'Structure model' '_citation.pdbx_database_id_DOI' 4 4 'Structure model' '_citation.title' 5 4 'Structure model' '_exptl_crystal_grow.method' 6 4 'Structure model' '_exptl_crystal_grow.temp' 7 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_chem_comp.mon_nstd_flag' 10 5 'Structure model' '_chem_comp.name' 11 5 'Structure model' '_chem_comp.type' 12 5 'Structure model' '_entity.pdbx_description' 13 5 'Structure model' '_pdbx_database_status.status_code_sf' 14 5 'Structure model' '_pdbx_entity_nonpoly.name' 15 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 6 'Structure model' '_chem_comp.pdbx_synonyms' 28 6 'Structure model' '_database_2.pdbx_DOI' 29 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE)' ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 3ZMH _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;CYCLOPENTYL (1-PHENYLBUT-3-EN-1YL)CARBAMATE (L62): L62 IS COVALENTLY BONDED TO S201 ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 218 ? ? -151.00 68.24 2 1 GLN A 220 ? ? -56.31 -4.70 3 1 GLN A 226 ? ? -46.68 151.22 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 91 ? CG ? A GLU 1 CG 2 1 Y 1 A GLU 91 ? CD ? A GLU 1 CD 3 1 Y 1 A GLU 91 ? OE1 ? A GLU 1 OE1 4 1 Y 1 A GLU 91 ? OE2 ? A GLU 1 OE2 5 1 Y 1 A GLN 220 ? CG ? A GLN 130 CG 6 1 Y 1 A GLN 220 ? CD ? A GLN 130 CD 7 1 Y 1 A GLN 220 ? OE1 ? A GLN 130 OE1 8 1 Y 1 A GLN 220 ? NE2 ? A GLN 130 NE2 9 1 Y 1 A PHE 245 ? CG ? A PHE 155 CG 10 1 Y 1 A PHE 245 ? CD1 ? A PHE 155 CD1 11 1 Y 1 A PHE 245 ? CD2 ? A PHE 155 CD2 12 1 Y 1 A PHE 245 ? CE1 ? A PHE 155 CE1 13 1 Y 1 A PHE 245 ? CE2 ? A PHE 155 CE2 14 1 Y 1 A PHE 245 ? CZ ? A PHE 155 CZ 15 1 N 1 A BNG 403 ? C1 ? D BNG 1 C1 16 1 N 1 A BNG 403 ? C2 ? D BNG 1 C2 17 1 N 1 A BNG 403 ? C3 ? D BNG 1 C3 18 1 N 1 A BNG 403 ? C4 ? D BNG 1 C4 19 1 N 1 A BNG 403 ? C5 ? D BNG 1 C5 20 1 N 1 A BNG 403 ? C6 ? D BNG 1 C6 21 1 N 1 A BNG 403 ? "C7'" ? D BNG 1 "C7'" 22 1 N 1 A BNG 403 ? "C8'" ? D BNG 1 "C8'" 23 1 N 1 A BNG 403 ? "C9'" ? D BNG 1 "C9'" 24 1 N 1 A BNG 403 ? O1 ? D BNG 1 O1 25 1 N 1 A BNG 403 ? O2 ? D BNG 1 O2 26 1 N 1 A BNG 403 ? O3 ? D BNG 1 O3 27 1 N 1 A BNG 403 ? O4 ? D BNG 1 O4 28 1 N 1 A BNG 403 ? O5 ? D BNG 1 O5 29 1 N 1 A BNG 403 ? O6 ? D BNG 1 O6 30 1 N 1 A BNG 404 ? C1 ? E BNG 1 C1 31 1 N 1 A BNG 404 ? C2 ? E BNG 1 C2 32 1 N 1 A BNG 404 ? C3 ? E BNG 1 C3 33 1 N 1 A BNG 404 ? C4 ? E BNG 1 C4 34 1 N 1 A BNG 404 ? C5 ? E BNG 1 C5 35 1 N 1 A BNG 404 ? C6 ? E BNG 1 C6 36 1 N 1 A BNG 404 ? "C7'" ? E BNG 1 "C7'" 37 1 N 1 A BNG 404 ? "C8'" ? E BNG 1 "C8'" 38 1 N 1 A BNG 404 ? "C9'" ? E BNG 1 "C9'" 39 1 N 1 A BNG 404 ? O1 ? E BNG 1 O1 40 1 N 1 A BNG 404 ? O2 ? E BNG 1 O2 41 1 N 1 A BNG 404 ? O3 ? E BNG 1 O3 42 1 N 1 A BNG 404 ? O4 ? E BNG 1 O4 43 1 N 1 A BNG 404 ? O5 ? E BNG 1 O5 44 1 N 1 A BNG 404 ? O6 ? E BNG 1 O6 45 1 N 1 A BNG 405 ? C1 ? F BNG 1 C1 46 1 N 1 A BNG 405 ? C2 ? F BNG 1 C2 47 1 N 1 A BNG 405 ? C3 ? F BNG 1 C3 48 1 N 1 A BNG 405 ? C4 ? F BNG 1 C4 49 1 N 1 A BNG 405 ? C5 ? F BNG 1 C5 50 1 N 1 A BNG 405 ? C6 ? F BNG 1 C6 51 1 N 1 A BNG 405 ? O2 ? F BNG 1 O2 52 1 N 1 A BNG 405 ? O3 ? F BNG 1 O3 53 1 N 1 A BNG 405 ? O4 ? F BNG 1 O4 54 1 N 1 A BNG 405 ? O5 ? F BNG 1 O5 55 1 N 1 A BNG 405 ? O6 ? F BNG 1 O6 56 1 N 1 A BNG 406 ? C1 ? G BNG 1 C1 57 1 N 1 A BNG 406 ? C2 ? G BNG 1 C2 58 1 N 1 A BNG 406 ? C3 ? G BNG 1 C3 59 1 N 1 A BNG 406 ? C4 ? G BNG 1 C4 60 1 N 1 A BNG 406 ? C5 ? G BNG 1 C5 61 1 N 1 A BNG 406 ? C6 ? G BNG 1 C6 62 1 N 1 A BNG 406 ? O1 ? G BNG 1 O1 63 1 N 1 A BNG 406 ? O2 ? G BNG 1 O2 64 1 N 1 A BNG 406 ? O3 ? G BNG 1 O3 65 1 N 1 A BNG 406 ? O4 ? G BNG 1 O4 66 1 N 1 A BNG 406 ? O5 ? G BNG 1 O5 67 1 N 1 A BNG 406 ? O6 ? G BNG 1 O6 68 1 N 1 A BNG 407 ? C1 ? H BNG 1 C1 69 1 N 1 A BNG 407 ? C2 ? H BNG 1 C2 70 1 N 1 A BNG 407 ? C3 ? H BNG 1 C3 71 1 N 1 A BNG 407 ? C4 ? H BNG 1 C4 72 1 N 1 A BNG 407 ? C5 ? H BNG 1 C5 73 1 N 1 A BNG 407 ? C6 ? H BNG 1 C6 74 1 N 1 A BNG 407 ? "C7'" ? H BNG 1 "C7'" 75 1 N 1 A BNG 407 ? "C8'" ? H BNG 1 "C8'" 76 1 N 1 A BNG 407 ? "C9'" ? H BNG 1 "C9'" 77 1 N 1 A BNG 407 ? O1 ? H BNG 1 O1 78 1 N 1 A BNG 407 ? O2 ? H BNG 1 O2 79 1 N 1 A BNG 407 ? O3 ? H BNG 1 O3 80 1 N 1 A BNG 407 ? O4 ? H BNG 1 O4 81 1 N 1 A BNG 407 ? O5 ? H BNG 1 O5 82 1 N 1 A BNG 407 ? O6 ? H BNG 1 O6 83 1 N 1 A BNG 408 ? C1 ? I BNG 1 C1 84 1 N 1 A BNG 408 ? C2 ? I BNG 1 C2 85 1 N 1 A BNG 408 ? C3 ? I BNG 1 C3 86 1 N 1 A BNG 408 ? C4 ? I BNG 1 C4 87 1 N 1 A BNG 408 ? C5 ? I BNG 1 C5 88 1 N 1 A BNG 408 ? C6 ? I BNG 1 C6 89 1 N 1 A BNG 408 ? "C5'" ? I BNG 1 "C5'" 90 1 N 1 A BNG 408 ? "C6'" ? I BNG 1 "C6'" 91 1 N 1 A BNG 408 ? "C7'" ? I BNG 1 "C7'" 92 1 N 1 A BNG 408 ? "C8'" ? I BNG 1 "C8'" 93 1 N 1 A BNG 408 ? "C9'" ? I BNG 1 "C9'" 94 1 N 1 A BNG 408 ? O1 ? I BNG 1 O1 95 1 N 1 A BNG 408 ? O2 ? I BNG 1 O2 96 1 N 1 A BNG 408 ? O3 ? I BNG 1 O3 97 1 N 1 A BNG 408 ? O4 ? I BNG 1 O4 98 1 N 1 A BNG 408 ? O5 ? I BNG 1 O5 99 1 N 1 A BNG 408 ? O6 ? I BNG 1 O6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 78C O1 O N N 1 78C C2 C N N 2 78C C3 C N N 3 78C C4 C N S 4 78C C11 C Y N 5 78C C12 C Y N 6 78C C13 C Y N 7 78C C14 C Y N 8 78C C15 C Y N 9 78C C16 C Y N 10 78C N1 N N N 11 78C C5 C N N 12 78C O2 O N N 13 78C O3 O N N 14 78C C6 C N N 15 78C C7 C N N 16 78C C8 C N N 17 78C C9 C N N 18 78C C10 C N N 19 78C H31C H N N 20 78C H32C H N N 21 78C H4 H N N 22 78C H12 H N N 23 78C H16 H N N 24 78C H13 H N N 25 78C H14 H N N 26 78C H15 H N N 27 78C H6 H N N 28 78C H71C H N N 29 78C H72C H N N 30 78C H101 H N N 31 78C H102 H N N 32 78C H81C H N N 33 78C H82C H N N 34 78C H91C H N N 35 78C H92C H N N 36 ALA N N N N 37 ALA CA C N S 38 ALA C C N N 39 ALA O O N N 40 ALA CB C N N 41 ALA OXT O N N 42 ALA H H N N 43 ALA H2 H N N 44 ALA HA H N N 45 ALA HB1 H N N 46 ALA HB2 H N N 47 ALA HB3 H N N 48 ALA HXT H N N 49 ARG N N N N 50 ARG CA C N S 51 ARG C C N N 52 ARG O O N N 53 ARG CB C N N 54 ARG CG C N N 55 ARG CD C N N 56 ARG NE N N N 57 ARG CZ C N N 58 ARG NH1 N N N 59 ARG NH2 N N N 60 ARG OXT O N N 61 ARG H H N N 62 ARG H2 H N N 63 ARG HA H N N 64 ARG HB2 H N N 65 ARG HB3 H N N 66 ARG HG2 H N N 67 ARG HG3 H N N 68 ARG HD2 H N N 69 ARG HD3 H N N 70 ARG HE H N N 71 ARG HH11 H N N 72 ARG HH12 H N N 73 ARG HH21 H N N 74 ARG HH22 H N N 75 ARG HXT H N N 76 ASN N N N N 77 ASN CA C N S 78 ASN C C N N 79 ASN O O N N 80 ASN CB C N N 81 ASN CG C N N 82 ASN OD1 O N N 83 ASN ND2 N N N 84 ASN OXT O N N 85 ASN H H N N 86 ASN H2 H N N 87 ASN HA H N N 88 ASN HB2 H N N 89 ASN HB3 H N N 90 ASN HD21 H N N 91 ASN HD22 H N N 92 ASN HXT H N N 93 ASP N N N N 94 ASP CA C N S 95 ASP C C N N 96 ASP O O N N 97 ASP CB C N N 98 ASP CG C N N 99 ASP OD1 O N N 100 ASP OD2 O N N 101 ASP OXT O N N 102 ASP H H N N 103 ASP H2 H N N 104 ASP HA H N N 105 ASP HB2 H N N 106 ASP HB3 H N N 107 ASP HD2 H N N 108 ASP HXT H N N 109 BNG C1 C N R 110 BNG C2 C N R 111 BNG C3 C N S 112 BNG C4 C N S 113 BNG C5 C N R 114 BNG C6 C N N 115 BNG "C1'" C N N 116 BNG "C2'" C N N 117 BNG "C3'" C N N 118 BNG "C4'" C N N 119 BNG "C5'" C N N 120 BNG "C6'" C N N 121 BNG "C7'" C N N 122 BNG "C8'" C N N 123 BNG "C9'" C N N 124 BNG O1 O N N 125 BNG O2 O N N 126 BNG O3 O N N 127 BNG O4 O N N 128 BNG O5 O N N 129 BNG O6 O N N 130 BNG H1 H N N 131 BNG H2 H N N 132 BNG H3 H N N 133 BNG H4 H N N 134 BNG H5 H N N 135 BNG H61 H N N 136 BNG H62 H N N 137 BNG "H1'1" H N N 138 BNG "H1'2" H N N 139 BNG "H2'1" H N N 140 BNG "H2'2" H N N 141 BNG "H3'1" H N N 142 BNG "H3'2" H N N 143 BNG "H4'1" H N N 144 BNG "H4'2" H N N 145 BNG "H5'1" H N N 146 BNG "H5'2" H N N 147 BNG "H6'1" H N N 148 BNG "H6'2" H N N 149 BNG "H7'1" H N N 150 BNG "H7'2" H N N 151 BNG "H8'1" H N N 152 BNG "H8'2" H N N 153 BNG "H9'1" H N N 154 BNG "H9'2" H N N 155 BNG "H9'3" H N N 156 BNG HO2 H N N 157 BNG HO3 H N N 158 BNG HO4 H N N 159 BNG HO6 H N N 160 CL CL CL N N 161 CYS N N N N 162 CYS CA C N R 163 CYS C C N N 164 CYS O O N N 165 CYS CB C N N 166 CYS SG S N N 167 CYS OXT O N N 168 CYS H H N N 169 CYS H2 H N N 170 CYS HA H N N 171 CYS HB2 H N N 172 CYS HB3 H N N 173 CYS HG H N N 174 CYS HXT H N N 175 GLN N N N N 176 GLN CA C N S 177 GLN C C N N 178 GLN O O N N 179 GLN CB C N N 180 GLN CG C N N 181 GLN CD C N N 182 GLN OE1 O N N 183 GLN NE2 N N N 184 GLN OXT O N N 185 GLN H H N N 186 GLN H2 H N N 187 GLN HA H N N 188 GLN HB2 H N N 189 GLN HB3 H N N 190 GLN HG2 H N N 191 GLN HG3 H N N 192 GLN HE21 H N N 193 GLN HE22 H N N 194 GLN HXT H N N 195 GLU N N N N 196 GLU CA C N S 197 GLU C C N N 198 GLU O O N N 199 GLU CB C N N 200 GLU CG C N N 201 GLU CD C N N 202 GLU OE1 O N N 203 GLU OE2 O N N 204 GLU OXT O N N 205 GLU H H N N 206 GLU H2 H N N 207 GLU HA H N N 208 GLU HB2 H N N 209 GLU HB3 H N N 210 GLU HG2 H N N 211 GLU HG3 H N N 212 GLU HE2 H N N 213 GLU HXT H N N 214 GLY N N N N 215 GLY CA C N N 216 GLY C C N N 217 GLY O O N N 218 GLY OXT O N N 219 GLY H H N N 220 GLY H2 H N N 221 GLY HA2 H N N 222 GLY HA3 H N N 223 GLY HXT H N N 224 HIS N N N N 225 HIS CA C N S 226 HIS C C N N 227 HIS O O N N 228 HIS CB C N N 229 HIS CG C Y N 230 HIS ND1 N Y N 231 HIS CD2 C Y N 232 HIS CE1 C Y N 233 HIS NE2 N Y N 234 HIS OXT O N N 235 HIS H H N N 236 HIS H2 H N N 237 HIS HA H N N 238 HIS HB2 H N N 239 HIS HB3 H N N 240 HIS HD1 H N N 241 HIS HD2 H N N 242 HIS HE1 H N N 243 HIS HE2 H N N 244 HIS HXT H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 ILE N N N N 249 ILE CA C N S 250 ILE C C N N 251 ILE O O N N 252 ILE CB C N S 253 ILE CG1 C N N 254 ILE CG2 C N N 255 ILE CD1 C N N 256 ILE OXT O N N 257 ILE H H N N 258 ILE H2 H N N 259 ILE HA H N N 260 ILE HB H N N 261 ILE HG12 H N N 262 ILE HG13 H N N 263 ILE HG21 H N N 264 ILE HG22 H N N 265 ILE HG23 H N N 266 ILE HD11 H N N 267 ILE HD12 H N N 268 ILE HD13 H N N 269 ILE HXT H N N 270 L62 O2 O N N 271 L62 C5 C N N 272 L62 O3 O N N 273 L62 C6 C N N 274 L62 C7 C N N 275 L62 C8 C N N 276 L62 C9 C N N 277 L62 C10 C N N 278 L62 N1 N N N 279 L62 C4 C N R 280 L62 C3 C N N 281 L62 C2 C N N 282 L62 O1 O N N 283 L62 C11 C Y N 284 L62 C12 C Y N 285 L62 C13 C Y N 286 L62 C14 C Y N 287 L62 C15 C Y N 288 L62 C16 C Y N 289 L62 H1 H N N 290 L62 H6 H N N 291 L62 H71C H N N 292 L62 H72C H N N 293 L62 H101 H N N 294 L62 H102 H N N 295 L62 H81C H N N 296 L62 H82C H N N 297 L62 H91C H N N 298 L62 H92C H N N 299 L62 H4 H N N 300 L62 H31C H N N 301 L62 H32C H N N 302 L62 HXT H N N 303 L62 H12 H N N 304 L62 H16 H N N 305 L62 H13 H N N 306 L62 H14 H N N 307 L62 H15 H N N 308 LEU N N N N 309 LEU CA C N S 310 LEU C C N N 311 LEU O O N N 312 LEU CB C N N 313 LEU CG C N N 314 LEU CD1 C N N 315 LEU CD2 C N N 316 LEU OXT O N N 317 LEU H H N N 318 LEU H2 H N N 319 LEU HA H N N 320 LEU HB2 H N N 321 LEU HB3 H N N 322 LEU HG H N N 323 LEU HD11 H N N 324 LEU HD12 H N N 325 LEU HD13 H N N 326 LEU HD21 H N N 327 LEU HD22 H N N 328 LEU HD23 H N N 329 LEU HXT H N N 330 LYS N N N N 331 LYS CA C N S 332 LYS C C N N 333 LYS O O N N 334 LYS CB C N N 335 LYS CG C N N 336 LYS CD C N N 337 LYS CE C N N 338 LYS NZ N N N 339 LYS OXT O N N 340 LYS H H N N 341 LYS H2 H N N 342 LYS HA H N N 343 LYS HB2 H N N 344 LYS HB3 H N N 345 LYS HG2 H N N 346 LYS HG3 H N N 347 LYS HD2 H N N 348 LYS HD3 H N N 349 LYS HE2 H N N 350 LYS HE3 H N N 351 LYS HZ1 H N N 352 LYS HZ2 H N N 353 LYS HZ3 H N N 354 LYS HXT H N N 355 MET N N N N 356 MET CA C N S 357 MET C C N N 358 MET O O N N 359 MET CB C N N 360 MET CG C N N 361 MET SD S N N 362 MET CE C N N 363 MET OXT O N N 364 MET H H N N 365 MET H2 H N N 366 MET HA H N N 367 MET HB2 H N N 368 MET HB3 H N N 369 MET HG2 H N N 370 MET HG3 H N N 371 MET HE1 H N N 372 MET HE2 H N N 373 MET HE3 H N N 374 MET HXT H N N 375 PHE N N N N 376 PHE CA C N S 377 PHE C C N N 378 PHE O O N N 379 PHE CB C N N 380 PHE CG C Y N 381 PHE CD1 C Y N 382 PHE CD2 C Y N 383 PHE CE1 C Y N 384 PHE CE2 C Y N 385 PHE CZ C Y N 386 PHE OXT O N N 387 PHE H H N N 388 PHE H2 H N N 389 PHE HA H N N 390 PHE HB2 H N N 391 PHE HB3 H N N 392 PHE HD1 H N N 393 PHE HD2 H N N 394 PHE HE1 H N N 395 PHE HE2 H N N 396 PHE HZ H N N 397 PHE HXT H N N 398 PRO N N N N 399 PRO CA C N S 400 PRO C C N N 401 PRO O O N N 402 PRO CB C N N 403 PRO CG C N N 404 PRO CD C N N 405 PRO OXT O N N 406 PRO H H N N 407 PRO HA H N N 408 PRO HB2 H N N 409 PRO HB3 H N N 410 PRO HG2 H N N 411 PRO HG3 H N N 412 PRO HD2 H N N 413 PRO HD3 H N N 414 PRO HXT H N N 415 SER N N N N 416 SER CA C N S 417 SER C C N N 418 SER O O N N 419 SER CB C N N 420 SER OG O N N 421 SER OXT O N N 422 SER H H N N 423 SER H2 H N N 424 SER HA H N N 425 SER HB2 H N N 426 SER HB3 H N N 427 SER HG H N N 428 SER HXT H N N 429 THR N N N N 430 THR CA C N S 431 THR C C N N 432 THR O O N N 433 THR CB C N R 434 THR OG1 O N N 435 THR CG2 C N N 436 THR OXT O N N 437 THR H H N N 438 THR H2 H N N 439 THR HA H N N 440 THR HB H N N 441 THR HG1 H N N 442 THR HG21 H N N 443 THR HG22 H N N 444 THR HG23 H N N 445 THR HXT H N N 446 TRP N N N N 447 TRP CA C N S 448 TRP C C N N 449 TRP O O N N 450 TRP CB C N N 451 TRP CG C Y N 452 TRP CD1 C Y N 453 TRP CD2 C Y N 454 TRP NE1 N Y N 455 TRP CE2 C Y N 456 TRP CE3 C Y N 457 TRP CZ2 C Y N 458 TRP CZ3 C Y N 459 TRP CH2 C Y N 460 TRP OXT O N N 461 TRP H H N N 462 TRP H2 H N N 463 TRP HA H N N 464 TRP HB2 H N N 465 TRP HB3 H N N 466 TRP HD1 H N N 467 TRP HE1 H N N 468 TRP HE3 H N N 469 TRP HZ2 H N N 470 TRP HZ3 H N N 471 TRP HH2 H N N 472 TRP HXT H N N 473 TYR N N N N 474 TYR CA C N S 475 TYR C C N N 476 TYR O O N N 477 TYR CB C N N 478 TYR CG C Y N 479 TYR CD1 C Y N 480 TYR CD2 C Y N 481 TYR CE1 C Y N 482 TYR CE2 C Y N 483 TYR CZ C Y N 484 TYR OH O N N 485 TYR OXT O N N 486 TYR H H N N 487 TYR H2 H N N 488 TYR HA H N N 489 TYR HB2 H N N 490 TYR HB3 H N N 491 TYR HD1 H N N 492 TYR HD2 H N N 493 TYR HE1 H N N 494 TYR HE2 H N N 495 TYR HH H N N 496 TYR HXT H N N 497 VAL N N N N 498 VAL CA C N S 499 VAL C C N N 500 VAL O O N N 501 VAL CB C N N 502 VAL CG1 C N N 503 VAL CG2 C N N 504 VAL OXT O N N 505 VAL H H N N 506 VAL H2 H N N 507 VAL HA H N N 508 VAL HB H N N 509 VAL HG11 H N N 510 VAL HG12 H N N 511 VAL HG13 H N N 512 VAL HG21 H N N 513 VAL HG22 H N N 514 VAL HG23 H N N 515 VAL HXT H N N 516 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 78C O1 C2 doub N N 1 78C C2 C3 sing N N 2 78C C2 N1 sing N N 3 78C C3 C4 sing N N 4 78C C4 C11 sing N N 5 78C C4 N1 sing N N 6 78C C11 C12 sing Y N 7 78C C11 C16 doub Y N 8 78C C12 C13 doub Y N 9 78C C13 C14 sing Y N 10 78C C14 C15 doub Y N 11 78C C15 C16 sing Y N 12 78C N1 C5 sing N N 13 78C C5 O2 doub N N 14 78C C5 O3 sing N N 15 78C O3 C6 sing N N 16 78C C6 C7 sing N N 17 78C C6 C10 sing N N 18 78C C7 C8 sing N N 19 78C C8 C9 sing N N 20 78C C9 C10 sing N N 21 78C C3 H31C sing N N 22 78C C3 H32C sing N N 23 78C C4 H4 sing N N 24 78C C12 H12 sing N N 25 78C C16 H16 sing N N 26 78C C13 H13 sing N N 27 78C C14 H14 sing N N 28 78C C15 H15 sing N N 29 78C C6 H6 sing N N 30 78C C7 H71C sing N N 31 78C C7 H72C sing N N 32 78C C10 H101 sing N N 33 78C C10 H102 sing N N 34 78C C8 H81C sing N N 35 78C C8 H82C sing N N 36 78C C9 H91C sing N N 37 78C C9 H92C sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 BNG C1 C2 sing N N 108 BNG C1 O1 sing N N 109 BNG C1 O5 sing N N 110 BNG C1 H1 sing N N 111 BNG C2 C3 sing N N 112 BNG C2 O2 sing N N 113 BNG C2 H2 sing N N 114 BNG C3 C4 sing N N 115 BNG C3 O3 sing N N 116 BNG C3 H3 sing N N 117 BNG C4 C5 sing N N 118 BNG C4 O4 sing N N 119 BNG C4 H4 sing N N 120 BNG C5 C6 sing N N 121 BNG C5 O5 sing N N 122 BNG C5 H5 sing N N 123 BNG C6 O6 sing N N 124 BNG C6 H61 sing N N 125 BNG C6 H62 sing N N 126 BNG "C1'" "C2'" sing N N 127 BNG "C1'" O1 sing N N 128 BNG "C1'" "H1'1" sing N N 129 BNG "C1'" "H1'2" sing N N 130 BNG "C2'" "C3'" sing N N 131 BNG "C2'" "H2'1" sing N N 132 BNG "C2'" "H2'2" sing N N 133 BNG "C3'" "C4'" sing N N 134 BNG "C3'" "H3'1" sing N N 135 BNG "C3'" "H3'2" sing N N 136 BNG "C4'" "C5'" sing N N 137 BNG "C4'" "H4'1" sing N N 138 BNG "C4'" "H4'2" sing N N 139 BNG "C5'" "C6'" sing N N 140 BNG "C5'" "H5'1" sing N N 141 BNG "C5'" "H5'2" sing N N 142 BNG "C6'" "C7'" sing N N 143 BNG "C6'" "H6'1" sing N N 144 BNG "C6'" "H6'2" sing N N 145 BNG "C7'" "C8'" sing N N 146 BNG "C7'" "H7'1" sing N N 147 BNG "C7'" "H7'2" sing N N 148 BNG "C8'" "C9'" sing N N 149 BNG "C8'" "H8'1" sing N N 150 BNG "C8'" "H8'2" sing N N 151 BNG "C9'" "H9'1" sing N N 152 BNG "C9'" "H9'2" sing N N 153 BNG "C9'" "H9'3" sing N N 154 BNG O2 HO2 sing N N 155 BNG O3 HO3 sing N N 156 BNG O4 HO4 sing N N 157 BNG O6 HO6 sing N N 158 CYS N CA sing N N 159 CYS N H sing N N 160 CYS N H2 sing N N 161 CYS CA C sing N N 162 CYS CA CB sing N N 163 CYS CA HA sing N N 164 CYS C O doub N N 165 CYS C OXT sing N N 166 CYS CB SG sing N N 167 CYS CB HB2 sing N N 168 CYS CB HB3 sing N N 169 CYS SG HG sing N N 170 CYS OXT HXT sing N N 171 GLN N CA sing N N 172 GLN N H sing N N 173 GLN N H2 sing N N 174 GLN CA C sing N N 175 GLN CA CB sing N N 176 GLN CA HA sing N N 177 GLN C O doub N N 178 GLN C OXT sing N N 179 GLN CB CG sing N N 180 GLN CB HB2 sing N N 181 GLN CB HB3 sing N N 182 GLN CG CD sing N N 183 GLN CG HG2 sing N N 184 GLN CG HG3 sing N N 185 GLN CD OE1 doub N N 186 GLN CD NE2 sing N N 187 GLN NE2 HE21 sing N N 188 GLN NE2 HE22 sing N N 189 GLN OXT HXT sing N N 190 GLU N CA sing N N 191 GLU N H sing N N 192 GLU N H2 sing N N 193 GLU CA C sing N N 194 GLU CA CB sing N N 195 GLU CA HA sing N N 196 GLU C O doub N N 197 GLU C OXT sing N N 198 GLU CB CG sing N N 199 GLU CB HB2 sing N N 200 GLU CB HB3 sing N N 201 GLU CG CD sing N N 202 GLU CG HG2 sing N N 203 GLU CG HG3 sing N N 204 GLU CD OE1 doub N N 205 GLU CD OE2 sing N N 206 GLU OE2 HE2 sing N N 207 GLU OXT HXT sing N N 208 GLY N CA sing N N 209 GLY N H sing N N 210 GLY N H2 sing N N 211 GLY CA C sing N N 212 GLY CA HA2 sing N N 213 GLY CA HA3 sing N N 214 GLY C O doub N N 215 GLY C OXT sing N N 216 GLY OXT HXT sing N N 217 HIS N CA sing N N 218 HIS N H sing N N 219 HIS N H2 sing N N 220 HIS CA C sing N N 221 HIS CA CB sing N N 222 HIS CA HA sing N N 223 HIS C O doub N N 224 HIS C OXT sing N N 225 HIS CB CG sing N N 226 HIS CB HB2 sing N N 227 HIS CB HB3 sing N N 228 HIS CG ND1 sing Y N 229 HIS CG CD2 doub Y N 230 HIS ND1 CE1 doub Y N 231 HIS ND1 HD1 sing N N 232 HIS CD2 NE2 sing Y N 233 HIS CD2 HD2 sing N N 234 HIS CE1 NE2 sing Y N 235 HIS CE1 HE1 sing N N 236 HIS NE2 HE2 sing N N 237 HIS OXT HXT sing N N 238 HOH O H1 sing N N 239 HOH O H2 sing N N 240 ILE N CA sing N N 241 ILE N H sing N N 242 ILE N H2 sing N N 243 ILE CA C sing N N 244 ILE CA CB sing N N 245 ILE CA HA sing N N 246 ILE C O doub N N 247 ILE C OXT sing N N 248 ILE CB CG1 sing N N 249 ILE CB CG2 sing N N 250 ILE CB HB sing N N 251 ILE CG1 CD1 sing N N 252 ILE CG1 HG12 sing N N 253 ILE CG1 HG13 sing N N 254 ILE CG2 HG21 sing N N 255 ILE CG2 HG22 sing N N 256 ILE CG2 HG23 sing N N 257 ILE CD1 HD11 sing N N 258 ILE CD1 HD12 sing N N 259 ILE CD1 HD13 sing N N 260 ILE OXT HXT sing N N 261 L62 O2 C5 doub N N 262 L62 C5 O3 sing N N 263 L62 C5 N1 sing N N 264 L62 O3 C6 sing N N 265 L62 C6 C7 sing N N 266 L62 C6 C10 sing N N 267 L62 C7 C8 sing N N 268 L62 C8 C9 sing N N 269 L62 C9 C10 sing N N 270 L62 N1 C4 sing N N 271 L62 C4 C3 sing N N 272 L62 C4 C11 sing N N 273 L62 C3 C2 sing N N 274 L62 C2 O1 doub N N 275 L62 C2 HXT sing N N 276 L62 C11 C12 sing Y N 277 L62 C11 C16 doub Y N 278 L62 C12 C13 doub Y N 279 L62 C13 C14 sing Y N 280 L62 C14 C15 doub Y N 281 L62 C15 C16 sing Y N 282 L62 N1 H1 sing N N 283 L62 C6 H6 sing N N 284 L62 C7 H71C sing N N 285 L62 C7 H72C sing N N 286 L62 C10 H101 sing N N 287 L62 C10 H102 sing N N 288 L62 C8 H81C sing N N 289 L62 C8 H82C sing N N 290 L62 C9 H91C sing N N 291 L62 C9 H92C sing N N 292 L62 C4 H4 sing N N 293 L62 C3 H31C sing N N 294 L62 C3 H32C sing N N 295 L62 C12 H12 sing N N 296 L62 C16 H16 sing N N 297 L62 C13 H13 sing N N 298 L62 C14 H14 sing N N 299 L62 C15 H15 sing N N 300 LEU N CA sing N N 301 LEU N H sing N N 302 LEU N H2 sing N N 303 LEU CA C sing N N 304 LEU CA CB sing N N 305 LEU CA HA sing N N 306 LEU C O doub N N 307 LEU C OXT sing N N 308 LEU CB CG sing N N 309 LEU CB HB2 sing N N 310 LEU CB HB3 sing N N 311 LEU CG CD1 sing N N 312 LEU CG CD2 sing N N 313 LEU CG HG sing N N 314 LEU CD1 HD11 sing N N 315 LEU CD1 HD12 sing N N 316 LEU CD1 HD13 sing N N 317 LEU CD2 HD21 sing N N 318 LEU CD2 HD22 sing N N 319 LEU CD2 HD23 sing N N 320 LEU OXT HXT sing N N 321 LYS N CA sing N N 322 LYS N H sing N N 323 LYS N H2 sing N N 324 LYS CA C sing N N 325 LYS CA CB sing N N 326 LYS CA HA sing N N 327 LYS C O doub N N 328 LYS C OXT sing N N 329 LYS CB CG sing N N 330 LYS CB HB2 sing N N 331 LYS CB HB3 sing N N 332 LYS CG CD sing N N 333 LYS CG HG2 sing N N 334 LYS CG HG3 sing N N 335 LYS CD CE sing N N 336 LYS CD HD2 sing N N 337 LYS CD HD3 sing N N 338 LYS CE NZ sing N N 339 LYS CE HE2 sing N N 340 LYS CE HE3 sing N N 341 LYS NZ HZ1 sing N N 342 LYS NZ HZ2 sing N N 343 LYS NZ HZ3 sing N N 344 LYS OXT HXT sing N N 345 MET N CA sing N N 346 MET N H sing N N 347 MET N H2 sing N N 348 MET CA C sing N N 349 MET CA CB sing N N 350 MET CA HA sing N N 351 MET C O doub N N 352 MET C OXT sing N N 353 MET CB CG sing N N 354 MET CB HB2 sing N N 355 MET CB HB3 sing N N 356 MET CG SD sing N N 357 MET CG HG2 sing N N 358 MET CG HG3 sing N N 359 MET SD CE sing N N 360 MET CE HE1 sing N N 361 MET CE HE2 sing N N 362 MET CE HE3 sing N N 363 MET OXT HXT sing N N 364 PHE N CA sing N N 365 PHE N H sing N N 366 PHE N H2 sing N N 367 PHE CA C sing N N 368 PHE CA CB sing N N 369 PHE CA HA sing N N 370 PHE C O doub N N 371 PHE C OXT sing N N 372 PHE CB CG sing N N 373 PHE CB HB2 sing N N 374 PHE CB HB3 sing N N 375 PHE CG CD1 doub Y N 376 PHE CG CD2 sing Y N 377 PHE CD1 CE1 sing Y N 378 PHE CD1 HD1 sing N N 379 PHE CD2 CE2 doub Y N 380 PHE CD2 HD2 sing N N 381 PHE CE1 CZ doub Y N 382 PHE CE1 HE1 sing N N 383 PHE CE2 CZ sing Y N 384 PHE CE2 HE2 sing N N 385 PHE CZ HZ sing N N 386 PHE OXT HXT sing N N 387 PRO N CA sing N N 388 PRO N CD sing N N 389 PRO N H sing N N 390 PRO CA C sing N N 391 PRO CA CB sing N N 392 PRO CA HA sing N N 393 PRO C O doub N N 394 PRO C OXT sing N N 395 PRO CB CG sing N N 396 PRO CB HB2 sing N N 397 PRO CB HB3 sing N N 398 PRO CG CD sing N N 399 PRO CG HG2 sing N N 400 PRO CG HG3 sing N N 401 PRO CD HD2 sing N N 402 PRO CD HD3 sing N N 403 PRO OXT HXT sing N N 404 SER N CA sing N N 405 SER N H sing N N 406 SER N H2 sing N N 407 SER CA C sing N N 408 SER CA CB sing N N 409 SER CA HA sing N N 410 SER C O doub N N 411 SER C OXT sing N N 412 SER CB OG sing N N 413 SER CB HB2 sing N N 414 SER CB HB3 sing N N 415 SER OG HG sing N N 416 SER OXT HXT sing N N 417 THR N CA sing N N 418 THR N H sing N N 419 THR N H2 sing N N 420 THR CA C sing N N 421 THR CA CB sing N N 422 THR CA HA sing N N 423 THR C O doub N N 424 THR C OXT sing N N 425 THR CB OG1 sing N N 426 THR CB CG2 sing N N 427 THR CB HB sing N N 428 THR OG1 HG1 sing N N 429 THR CG2 HG21 sing N N 430 THR CG2 HG22 sing N N 431 THR CG2 HG23 sing N N 432 THR OXT HXT sing N N 433 TRP N CA sing N N 434 TRP N H sing N N 435 TRP N H2 sing N N 436 TRP CA C sing N N 437 TRP CA CB sing N N 438 TRP CA HA sing N N 439 TRP C O doub N N 440 TRP C OXT sing N N 441 TRP CB CG sing N N 442 TRP CB HB2 sing N N 443 TRP CB HB3 sing N N 444 TRP CG CD1 doub Y N 445 TRP CG CD2 sing Y N 446 TRP CD1 NE1 sing Y N 447 TRP CD1 HD1 sing N N 448 TRP CD2 CE2 doub Y N 449 TRP CD2 CE3 sing Y N 450 TRP NE1 CE2 sing Y N 451 TRP NE1 HE1 sing N N 452 TRP CE2 CZ2 sing Y N 453 TRP CE3 CZ3 doub Y N 454 TRP CE3 HE3 sing N N 455 TRP CZ2 CH2 doub Y N 456 TRP CZ2 HZ2 sing N N 457 TRP CZ3 CH2 sing Y N 458 TRP CZ3 HZ3 sing N N 459 TRP CH2 HH2 sing N N 460 TRP OXT HXT sing N N 461 TYR N CA sing N N 462 TYR N H sing N N 463 TYR N H2 sing N N 464 TYR CA C sing N N 465 TYR CA CB sing N N 466 TYR CA HA sing N N 467 TYR C O doub N N 468 TYR C OXT sing N N 469 TYR CB CG sing N N 470 TYR CB HB2 sing N N 471 TYR CB HB3 sing N N 472 TYR CG CD1 doub Y N 473 TYR CG CD2 sing Y N 474 TYR CD1 CE1 sing Y N 475 TYR CD1 HD1 sing N N 476 TYR CD2 CE2 doub Y N 477 TYR CD2 HD2 sing N N 478 TYR CE1 CZ doub Y N 479 TYR CE1 HE1 sing N N 480 TYR CE2 CZ sing Y N 481 TYR CE2 HE2 sing N N 482 TYR CZ OH sing N N 483 TYR OH HH sing N N 484 TYR OXT HXT sing N N 485 VAL N CA sing N N 486 VAL N H sing N N 487 VAL N H2 sing N N 488 VAL CA C sing N N 489 VAL CA CB sing N N 490 VAL CA HA sing N N 491 VAL C O doub N N 492 VAL C OXT sing N N 493 VAL CB CG1 sing N N 494 VAL CB CG2 sing N N 495 VAL CB HB sing N N 496 VAL CG1 HG11 sing N N 497 VAL CG1 HG12 sing N N 498 VAL CG1 HG13 sing N N 499 VAL CG2 HG21 sing N N 500 VAL CG2 HG22 sing N N 501 VAL CG2 HG23 sing N N 502 VAL OXT HXT sing N N 503 # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-nonylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'cyclopentyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' L62 3 'CYCLOPENTYL 2-OXO-4-PHENYLAZETIDINE-1-CARBOXYLATE' 78C 4 'nonyl beta-D-glucopyranoside' BNG 5 'CHLORIDE ION' CL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2XOV _pdbx_initial_refinement_model.details 'PDB ENTRY 2XOV' #