data_3ZMJ # _entry.id 3ZMJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZMJ pdb_00003zmj 10.2210/pdb3zmj/pdb PDBE EBI-55776 ? ? WWPDB D_1290055776 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2013-05-29 3 'Structure model' 1 2 2013-08-28 4 'Structure model' 1 3 2019-02-27 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2023-12-20 7 'Structure model' 1 6 2024-10-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Structure summary' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Database references' 13 6 'Structure model' 'Refinement description' 14 6 'Structure model' 'Structure summary' 15 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_biol 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp 7 5 'Structure model' entity 8 5 'Structure model' pdbx_chem_comp_identifier 9 5 'Structure model' pdbx_database_status 10 5 'Structure model' pdbx_entity_nonpoly 11 5 'Structure model' struct_conn 12 5 'Structure model' struct_site 13 5 'Structure model' struct_site_gen 14 6 'Structure model' chem_comp 15 6 'Structure model' chem_comp_atom 16 6 'Structure model' chem_comp_bond 17 6 'Structure model' database_2 18 6 'Structure model' pdbx_initial_refinement_model 19 7 'Structure model' pdbx_entry_details 20 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_exptl_crystal_grow.temp' 3 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_chem_comp.mon_nstd_flag' 6 5 'Structure model' '_chem_comp.name' 7 5 'Structure model' '_chem_comp.type' 8 5 'Structure model' '_entity.pdbx_description' 9 5 'Structure model' '_pdbx_database_status.status_code_sf' 10 5 'Structure model' '_pdbx_entity_nonpoly.name' 11 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 6 'Structure model' '_chem_comp.pdbx_synonyms' 24 6 'Structure model' '_database_2.pdbx_DOI' 25 6 'Structure model' '_database_2.pdbx_database_accession' 26 7 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZMJ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-02-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZMH unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L62' PDB 3ZMI unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L29' PDB 3ZOT unspecified 'STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L29 (DATA SET 2)' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vinothkumar, K.R.' 1 ? 'Pierrat, O.' 2 ? 'Large, J.M.' 3 ? 'Freeman, M.' 4 ? # _citation.id primary _citation.title ;Structure of Rhomboid Protease in Complex with Beta-Lactam Inhibitors Defines the S2' Cavity. ; _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1051 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23665170 _citation.pdbx_database_id_DOI 10.1016/J.STR.2013.03.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vinothkumar, K.R.' 1 ? primary 'Pierrat, O.A.' 2 ? primary 'Large, J.M.' 3 ? primary 'Freeman, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RHOMBOID PROTEASE GLPG' 20214.020 1 3.4.21.105 ? 'CORE TM DOMAIN, RESIDUES 92-270' 'THE BETA LACTAM RING IS OPENED BY THE NUCLEOPHILIC ATTACK OF S201 ON C2-O1 TO FORM A COVALENT BOND' 2 non-polymer syn '2-methylpropyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' 249.306 1 ? ? ? ? 3 non-polymer man 'nonyl beta-D-glucopyranoside' 306.395 5 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 5 water nat water 18.015 27 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GLPG, INTRAMEMBRANE SERINE PROTEASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN GAHIAGLAVGLAMAFVDSL ; _entity_poly.pdbx_seq_one_letter_code_can ;RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN GAHIAGLAVGLAMAFVDSL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-methylpropyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' L61 3 'nonyl beta-D-glucopyranoside' BNG 4 'CHLORIDE ION' CL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ALA n 1 3 GLY n 1 4 PRO n 1 5 VAL n 1 6 THR n 1 7 TRP n 1 8 VAL n 1 9 MET n 1 10 MET n 1 11 ILE n 1 12 ALA n 1 13 CYS n 1 14 VAL n 1 15 VAL n 1 16 VAL n 1 17 PHE n 1 18 ILE n 1 19 ALA n 1 20 MET n 1 21 GLN n 1 22 ILE n 1 23 LEU n 1 24 GLY n 1 25 ASP n 1 26 GLN n 1 27 GLU n 1 28 VAL n 1 29 MET n 1 30 LEU n 1 31 TRP n 1 32 LEU n 1 33 ALA n 1 34 TRP n 1 35 PRO n 1 36 PHE n 1 37 ASP n 1 38 PRO n 1 39 THR n 1 40 LEU n 1 41 LYS n 1 42 PHE n 1 43 GLU n 1 44 PHE n 1 45 TRP n 1 46 ARG n 1 47 TYR n 1 48 PHE n 1 49 THR n 1 50 HIS n 1 51 ALA n 1 52 LEU n 1 53 MET n 1 54 HIS n 1 55 PHE n 1 56 SER n 1 57 LEU n 1 58 MET n 1 59 HIS n 1 60 ILE n 1 61 LEU n 1 62 PHE n 1 63 ASN n 1 64 LEU n 1 65 LEU n 1 66 TRP n 1 67 TRP n 1 68 TRP n 1 69 TYR n 1 70 LEU n 1 71 GLY n 1 72 GLY n 1 73 ALA n 1 74 VAL n 1 75 GLU n 1 76 LYS n 1 77 ARG n 1 78 LEU n 1 79 GLY n 1 80 SER n 1 81 GLY n 1 82 LYS n 1 83 LEU n 1 84 ILE n 1 85 VAL n 1 86 ILE n 1 87 THR n 1 88 LEU n 1 89 ILE n 1 90 SER n 1 91 ALA n 1 92 LEU n 1 93 LEU n 1 94 SER n 1 95 GLY n 1 96 TYR n 1 97 VAL n 1 98 GLN n 1 99 GLN n 1 100 LYS n 1 101 PHE n 1 102 SER n 1 103 GLY n 1 104 PRO n 1 105 TRP n 1 106 PHE n 1 107 GLY n 1 108 GLY n 1 109 LEU n 1 110 SER n 1 111 GLY n 1 112 VAL n 1 113 VAL n 1 114 TYR n 1 115 ALA n 1 116 LEU n 1 117 MET n 1 118 GLY n 1 119 TYR n 1 120 VAL n 1 121 TRP n 1 122 LEU n 1 123 ARG n 1 124 GLY n 1 125 GLU n 1 126 ARG n 1 127 ASP n 1 128 PRO n 1 129 GLN n 1 130 SER n 1 131 GLY n 1 132 ILE n 1 133 TYR n 1 134 LEU n 1 135 GLN n 1 136 ARG n 1 137 GLY n 1 138 LEU n 1 139 ILE n 1 140 ILE n 1 141 PHE n 1 142 ALA n 1 143 LEU n 1 144 ILE n 1 145 TRP n 1 146 ILE n 1 147 VAL n 1 148 ALA n 1 149 GLY n 1 150 TRP n 1 151 PHE n 1 152 ASP n 1 153 LEU n 1 154 PHE n 1 155 GLY n 1 156 MET n 1 157 SER n 1 158 MET n 1 159 ALA n 1 160 ASN n 1 161 GLY n 1 162 ALA n 1 163 HIS n 1 164 ILE n 1 165 ALA n 1 166 GLY n 1 167 LEU n 1 168 ALA n 1 169 VAL n 1 170 GLY n 1 171 LEU n 1 172 ALA n 1 173 MET n 1 174 ALA n 1 175 PHE n 1 176 VAL n 1 177 ASP n 1 178 SER n 1 179 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BNG D-saccharide n 'nonyl beta-D-glucopyranoside' 'Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside' 'C15 H30 O6' 306.395 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 L61 non-polymer . '2-methylpropyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate' ? 'C14 H19 N O3' 249.306 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-nonylglucoside # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 92 92 ARG ARG A . n A 1 2 ALA 2 93 93 ALA ALA A . n A 1 3 GLY 3 94 94 GLY GLY A . n A 1 4 PRO 4 95 95 PRO PRO A . n A 1 5 VAL 5 96 96 VAL VAL A . n A 1 6 THR 6 97 97 THR THR A . n A 1 7 TRP 7 98 98 TRP TRP A . n A 1 8 VAL 8 99 99 VAL VAL A . n A 1 9 MET 9 100 100 MET MET A . n A 1 10 MET 10 101 101 MET MET A . n A 1 11 ILE 11 102 102 ILE ILE A . n A 1 12 ALA 12 103 103 ALA ALA A . n A 1 13 CYS 13 104 104 CYS CYS A . n A 1 14 VAL 14 105 105 VAL VAL A . n A 1 15 VAL 15 106 106 VAL VAL A . n A 1 16 VAL 16 107 107 VAL VAL A . n A 1 17 PHE 17 108 108 PHE PHE A . n A 1 18 ILE 18 109 109 ILE ILE A . n A 1 19 ALA 19 110 110 ALA ALA A . n A 1 20 MET 20 111 111 MET MET A . n A 1 21 GLN 21 112 112 GLN GLN A . n A 1 22 ILE 22 113 113 ILE ILE A . n A 1 23 LEU 23 114 114 LEU LEU A . n A 1 24 GLY 24 115 115 GLY GLY A . n A 1 25 ASP 25 116 116 ASP ASP A . n A 1 26 GLN 26 117 117 GLN GLN A . n A 1 27 GLU 27 118 118 GLU GLU A . n A 1 28 VAL 28 119 119 VAL VAL A . n A 1 29 MET 29 120 120 MET MET A . n A 1 30 LEU 30 121 121 LEU LEU A . n A 1 31 TRP 31 122 122 TRP TRP A . n A 1 32 LEU 32 123 123 LEU LEU A . n A 1 33 ALA 33 124 124 ALA ALA A . n A 1 34 TRP 34 125 125 TRP TRP A . n A 1 35 PRO 35 126 126 PRO PRO A . n A 1 36 PHE 36 127 127 PHE PHE A . n A 1 37 ASP 37 128 128 ASP ASP A . n A 1 38 PRO 38 129 129 PRO PRO A . n A 1 39 THR 39 130 130 THR THR A . n A 1 40 LEU 40 131 131 LEU LEU A . n A 1 41 LYS 41 132 132 LYS LYS A . n A 1 42 PHE 42 133 133 PHE PHE A . n A 1 43 GLU 43 134 134 GLU GLU A . n A 1 44 PHE 44 135 135 PHE PHE A . n A 1 45 TRP 45 136 136 TRP TRP A . n A 1 46 ARG 46 137 137 ARG ARG A . n A 1 47 TYR 47 138 138 TYR TYR A . n A 1 48 PHE 48 139 139 PHE PHE A . n A 1 49 THR 49 140 140 THR THR A . n A 1 50 HIS 50 141 141 HIS HIS A . n A 1 51 ALA 51 142 142 ALA ALA A . n A 1 52 LEU 52 143 143 LEU LEU A . n A 1 53 MET 53 144 144 MET MET A . n A 1 54 HIS 54 145 145 HIS HIS A . n A 1 55 PHE 55 146 146 PHE PHE A . n A 1 56 SER 56 147 147 SER SER A . n A 1 57 LEU 57 148 148 LEU LEU A . n A 1 58 MET 58 149 149 MET MET A . n A 1 59 HIS 59 150 150 HIS HIS A . n A 1 60 ILE 60 151 151 ILE ILE A . n A 1 61 LEU 61 152 152 LEU LEU A . n A 1 62 PHE 62 153 153 PHE PHE A . n A 1 63 ASN 63 154 154 ASN ASN A . n A 1 64 LEU 64 155 155 LEU LEU A . n A 1 65 LEU 65 156 156 LEU LEU A . n A 1 66 TRP 66 157 157 TRP TRP A . n A 1 67 TRP 67 158 158 TRP TRP A . n A 1 68 TRP 68 159 159 TRP TRP A . n A 1 69 TYR 69 160 160 TYR TYR A . n A 1 70 LEU 70 161 161 LEU LEU A . n A 1 71 GLY 71 162 162 GLY GLY A . n A 1 72 GLY 72 163 163 GLY GLY A . n A 1 73 ALA 73 164 164 ALA ALA A . n A 1 74 VAL 74 165 165 VAL VAL A . n A 1 75 GLU 75 166 166 GLU GLU A . n A 1 76 LYS 76 167 167 LYS LYS A . n A 1 77 ARG 77 168 168 ARG ARG A . n A 1 78 LEU 78 169 169 LEU LEU A . n A 1 79 GLY 79 170 170 GLY GLY A . n A 1 80 SER 80 171 171 SER SER A . n A 1 81 GLY 81 172 172 GLY GLY A . n A 1 82 LYS 82 173 173 LYS LYS A . n A 1 83 LEU 83 174 174 LEU LEU A . n A 1 84 ILE 84 175 175 ILE ILE A . n A 1 85 VAL 85 176 176 VAL VAL A . n A 1 86 ILE 86 177 177 ILE ILE A . n A 1 87 THR 87 178 178 THR THR A . n A 1 88 LEU 88 179 179 LEU LEU A . n A 1 89 ILE 89 180 180 ILE ILE A . n A 1 90 SER 90 181 181 SER SER A . n A 1 91 ALA 91 182 182 ALA ALA A . n A 1 92 LEU 92 183 183 LEU LEU A . n A 1 93 LEU 93 184 184 LEU LEU A . n A 1 94 SER 94 185 185 SER SER A . n A 1 95 GLY 95 186 186 GLY GLY A . n A 1 96 TYR 96 187 187 TYR TYR A . n A 1 97 VAL 97 188 188 VAL VAL A . n A 1 98 GLN 98 189 189 GLN GLN A . n A 1 99 GLN 99 190 190 GLN GLN A . n A 1 100 LYS 100 191 191 LYS LYS A . n A 1 101 PHE 101 192 192 PHE PHE A . n A 1 102 SER 102 193 193 SER SER A . n A 1 103 GLY 103 194 194 GLY GLY A . n A 1 104 PRO 104 195 195 PRO PRO A . n A 1 105 TRP 105 196 196 TRP TRP A . n A 1 106 PHE 106 197 197 PHE PHE A . n A 1 107 GLY 107 198 198 GLY GLY A . n A 1 108 GLY 108 199 199 GLY GLY A . n A 1 109 LEU 109 200 200 LEU LEU A . n A 1 110 SER 110 201 201 SER SER A . n A 1 111 GLY 111 202 202 GLY GLY A . n A 1 112 VAL 112 203 203 VAL VAL A . n A 1 113 VAL 113 204 204 VAL VAL A . n A 1 114 TYR 114 205 205 TYR TYR A . n A 1 115 ALA 115 206 206 ALA ALA A . n A 1 116 LEU 116 207 207 LEU LEU A . n A 1 117 MET 117 208 208 MET MET A . n A 1 118 GLY 118 209 209 GLY GLY A . n A 1 119 TYR 119 210 210 TYR TYR A . n A 1 120 VAL 120 211 211 VAL VAL A . n A 1 121 TRP 121 212 212 TRP TRP A . n A 1 122 LEU 122 213 213 LEU LEU A . n A 1 123 ARG 123 214 214 ARG ARG A . n A 1 124 GLY 124 215 215 GLY GLY A . n A 1 125 GLU 125 216 216 GLU GLU A . n A 1 126 ARG 126 217 217 ARG ARG A . n A 1 127 ASP 127 218 218 ASP ASP A . n A 1 128 PRO 128 219 219 PRO PRO A . n A 1 129 GLN 129 220 220 GLN GLN A . n A 1 130 SER 130 221 221 SER SER A . n A 1 131 GLY 131 222 222 GLY GLY A . n A 1 132 ILE 132 223 223 ILE ILE A . n A 1 133 TYR 133 224 224 TYR TYR A . n A 1 134 LEU 134 225 225 LEU LEU A . n A 1 135 GLN 135 226 226 GLN GLN A . n A 1 136 ARG 136 227 227 ARG ARG A . n A 1 137 GLY 137 228 228 GLY GLY A . n A 1 138 LEU 138 229 229 LEU LEU A . n A 1 139 ILE 139 230 230 ILE ILE A . n A 1 140 ILE 140 231 231 ILE ILE A . n A 1 141 PHE 141 232 232 PHE PHE A . n A 1 142 ALA 142 233 233 ALA ALA A . n A 1 143 LEU 143 234 234 LEU LEU A . n A 1 144 ILE 144 235 235 ILE ILE A . n A 1 145 TRP 145 236 236 TRP TRP A . n A 1 146 ILE 146 237 237 ILE ILE A . n A 1 147 VAL 147 238 238 VAL VAL A . n A 1 148 ALA 148 239 239 ALA ALA A . n A 1 149 GLY 149 240 240 GLY GLY A . n A 1 150 TRP 150 241 241 TRP TRP A . n A 1 151 PHE 151 242 242 PHE PHE A . n A 1 152 ASP 152 243 243 ASP ASP A . n A 1 153 LEU 153 244 244 LEU LEU A . n A 1 154 PHE 154 245 ? ? ? A . n A 1 155 GLY 155 246 246 GLY GLY A . n A 1 156 MET 156 247 247 MET MET A . n A 1 157 SER 157 248 248 SER SER A . n A 1 158 MET 158 249 249 MET MET A . n A 1 159 ALA 159 250 250 ALA ALA A . n A 1 160 ASN 160 251 251 ASN ASN A . n A 1 161 GLY 161 252 252 GLY GLY A . n A 1 162 ALA 162 253 253 ALA ALA A . n A 1 163 HIS 163 254 254 HIS HIS A . n A 1 164 ILE 164 255 255 ILE ILE A . n A 1 165 ALA 165 256 256 ALA ALA A . n A 1 166 GLY 166 257 257 GLY GLY A . n A 1 167 LEU 167 258 258 LEU LEU A . n A 1 168 ALA 168 259 259 ALA ALA A . n A 1 169 VAL 169 260 260 VAL VAL A . n A 1 170 GLY 170 261 261 GLY GLY A . n A 1 171 LEU 171 262 262 LEU LEU A . n A 1 172 ALA 172 263 263 ALA ALA A . n A 1 173 MET 173 264 264 MET MET A . n A 1 174 ALA 174 265 265 ALA ALA A . n A 1 175 PHE 175 266 266 PHE PHE A . n A 1 176 VAL 176 267 267 VAL VAL A . n A 1 177 ASP 177 268 268 ASP ASP A . n A 1 178 SER 178 269 269 SER SER A . n A 1 179 LEU 179 270 270 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L61 1 401 401 L61 L61 A . C 3 BNG 1 402 402 BNG BNG A . D 3 BNG 1 403 403 BNG BNG A . E 3 BNG 1 404 404 BNG BNG A . F 3 BNG 1 405 405 BNG BNG A . G 3 BNG 1 406 406 BNG BNG A . H 4 CL 1 407 407 CL CL A . I 4 CL 1 408 408 CL CL A . J 4 CL 1 409 409 CL CL A . K 5 HOH 1 2001 2001 HOH HOH A . K 5 HOH 2 2002 2002 HOH HOH A . K 5 HOH 3 2003 2003 HOH HOH A . K 5 HOH 4 2004 2004 HOH HOH A . K 5 HOH 5 2005 2005 HOH HOH A . K 5 HOH 6 2006 2006 HOH HOH A . K 5 HOH 7 2007 2007 HOH HOH A . K 5 HOH 8 2008 2008 HOH HOH A . K 5 HOH 9 2009 2009 HOH HOH A . K 5 HOH 10 2010 2010 HOH HOH A . K 5 HOH 11 2011 2011 HOH HOH A . K 5 HOH 12 2012 2012 HOH HOH A . K 5 HOH 13 2013 2013 HOH HOH A . K 5 HOH 14 2014 2014 HOH HOH A . K 5 HOH 15 2015 2015 HOH HOH A . K 5 HOH 16 2016 2016 HOH HOH A . K 5 HOH 17 2017 2017 HOH HOH A . K 5 HOH 18 2018 2018 HOH HOH A . K 5 HOH 19 2019 2019 HOH HOH A . K 5 HOH 20 2020 2020 HOH HOH A . K 5 HOH 21 2021 2021 HOH HOH A . K 5 HOH 22 2022 2022 HOH HOH A . K 5 HOH 23 2023 2023 HOH HOH A . K 5 HOH 24 2024 2024 HOH HOH A . K 5 HOH 25 2025 2025 HOH HOH A . K 5 HOH 26 2026 2026 HOH HOH A . K 5 HOH 27 2027 2027 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 220 ? CG ? A GLN 129 CG 2 1 Y 1 A GLN 220 ? CD ? A GLN 129 CD 3 1 Y 1 A GLN 220 ? OE1 ? A GLN 129 OE1 4 1 Y 1 A GLN 220 ? NE2 ? A GLN 129 NE2 5 1 N 1 A BNG 402 ? C1 ? C BNG 1 C1 6 1 N 1 A BNG 402 ? C2 ? C BNG 1 C2 7 1 N 1 A BNG 402 ? C3 ? C BNG 1 C3 8 1 N 1 A BNG 402 ? C4 ? C BNG 1 C4 9 1 N 1 A BNG 402 ? C5 ? C BNG 1 C5 10 1 N 1 A BNG 402 ? C6 ? C BNG 1 C6 11 1 N 1 A BNG 402 ? "C7'" ? C BNG 1 "C7'" 12 1 N 1 A BNG 402 ? "C8'" ? C BNG 1 "C8'" 13 1 N 1 A BNG 402 ? "C9'" ? C BNG 1 "C9'" 14 1 N 1 A BNG 402 ? O1 ? C BNG 1 O1 15 1 N 1 A BNG 402 ? O2 ? C BNG 1 O2 16 1 N 1 A BNG 402 ? O3 ? C BNG 1 O3 17 1 N 1 A BNG 402 ? O4 ? C BNG 1 O4 18 1 N 1 A BNG 402 ? O5 ? C BNG 1 O5 19 1 N 1 A BNG 402 ? O6 ? C BNG 1 O6 20 1 N 1 A BNG 403 ? C1 ? D BNG 1 C1 21 1 N 1 A BNG 403 ? C2 ? D BNG 1 C2 22 1 N 1 A BNG 403 ? C3 ? D BNG 1 C3 23 1 N 1 A BNG 403 ? C4 ? D BNG 1 C4 24 1 N 1 A BNG 403 ? C5 ? D BNG 1 C5 25 1 N 1 A BNG 403 ? C6 ? D BNG 1 C6 26 1 N 1 A BNG 403 ? "C8'" ? D BNG 1 "C8'" 27 1 N 1 A BNG 403 ? "C9'" ? D BNG 1 "C9'" 28 1 N 1 A BNG 403 ? O1 ? D BNG 1 O1 29 1 N 1 A BNG 403 ? O2 ? D BNG 1 O2 30 1 N 1 A BNG 403 ? O3 ? D BNG 1 O3 31 1 N 1 A BNG 403 ? O4 ? D BNG 1 O4 32 1 N 1 A BNG 403 ? O5 ? D BNG 1 O5 33 1 N 1 A BNG 403 ? O6 ? D BNG 1 O6 34 1 N 1 A BNG 404 ? C1 ? E BNG 1 C1 35 1 N 1 A BNG 404 ? C2 ? E BNG 1 C2 36 1 N 1 A BNG 404 ? C3 ? E BNG 1 C3 37 1 N 1 A BNG 404 ? C4 ? E BNG 1 C4 38 1 N 1 A BNG 404 ? C5 ? E BNG 1 C5 39 1 N 1 A BNG 404 ? C6 ? E BNG 1 C6 40 1 N 1 A BNG 404 ? O2 ? E BNG 1 O2 41 1 N 1 A BNG 404 ? O3 ? E BNG 1 O3 42 1 N 1 A BNG 404 ? O4 ? E BNG 1 O4 43 1 N 1 A BNG 404 ? O5 ? E BNG 1 O5 44 1 N 1 A BNG 404 ? O6 ? E BNG 1 O6 45 1 N 1 A BNG 405 ? C1 ? F BNG 1 C1 46 1 N 1 A BNG 405 ? C2 ? F BNG 1 C2 47 1 N 1 A BNG 405 ? C3 ? F BNG 1 C3 48 1 N 1 A BNG 405 ? C4 ? F BNG 1 C4 49 1 N 1 A BNG 405 ? C5 ? F BNG 1 C5 50 1 N 1 A BNG 405 ? C6 ? F BNG 1 C6 51 1 N 1 A BNG 405 ? "C8'" ? F BNG 1 "C8'" 52 1 N 1 A BNG 405 ? "C9'" ? F BNG 1 "C9'" 53 1 N 1 A BNG 405 ? O1 ? F BNG 1 O1 54 1 N 1 A BNG 405 ? O2 ? F BNG 1 O2 55 1 N 1 A BNG 405 ? O3 ? F BNG 1 O3 56 1 N 1 A BNG 405 ? O4 ? F BNG 1 O4 57 1 N 1 A BNG 405 ? O5 ? F BNG 1 O5 58 1 N 1 A BNG 405 ? O6 ? F BNG 1 O6 59 1 N 1 A BNG 406 ? C1 ? G BNG 1 C1 60 1 N 1 A BNG 406 ? C2 ? G BNG 1 C2 61 1 N 1 A BNG 406 ? C3 ? G BNG 1 C3 62 1 N 1 A BNG 406 ? C4 ? G BNG 1 C4 63 1 N 1 A BNG 406 ? C5 ? G BNG 1 C5 64 1 N 1 A BNG 406 ? C6 ? G BNG 1 C6 65 1 N 1 A BNG 406 ? "C5'" ? G BNG 1 "C5'" 66 1 N 1 A BNG 406 ? "C6'" ? G BNG 1 "C6'" 67 1 N 1 A BNG 406 ? "C7'" ? G BNG 1 "C7'" 68 1 N 1 A BNG 406 ? "C8'" ? G BNG 1 "C8'" 69 1 N 1 A BNG 406 ? "C9'" ? G BNG 1 "C9'" 70 1 N 1 A BNG 406 ? O1 ? G BNG 1 O1 71 1 N 1 A BNG 406 ? O2 ? G BNG 1 O2 72 1 N 1 A BNG 406 ? O3 ? G BNG 1 O3 73 1 N 1 A BNG 406 ? O4 ? G BNG 1 O4 74 1 N 1 A BNG 406 ? O5 ? G BNG 1 O5 75 1 N 1 A BNG 406 ? O6 ? G BNG 1 O6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE: DEV_1284)' ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # _cell.entry_id 3ZMJ _cell.length_a 110.280 _cell.length_b 110.280 _cell.length_c 128.240 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZMJ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 3ZMJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.5 _exptl_crystal.density_percent_sol 65.6 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.75 M AMMONIUM CHLORIDE, 0.1M BIS-TRIS, PH 7.0, 298 K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2011-08-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZMJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 53.24 _reflns.d_resolution_high 2.30 _reflns.number_obs 13419 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.40 _reflns.B_iso_Wilson_estimate 40.9 _reflns.pdbx_redundancy 5.2 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.59 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.00 _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZMJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13416 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 53.235 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.03 _refine.ls_R_factor_obs 0.1981 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1965 _refine.ls_R_factor_R_free 0.2306 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 669 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 42 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2XOV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 23.18 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1415 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 1497 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 53.235 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1532 'X-RAY DIFFRACTION' ? f_angle_d 1.036 ? ? 2070 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.558 ? ? 521 'X-RAY DIFFRACTION' ? f_chiral_restr 0.070 ? ? 219 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 242 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.3000 2.4776 2535 0.2199 100.00 0.2607 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.4776 2.7269 2521 0.1897 99.00 0.2324 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.7269 3.1215 2513 0.1752 99.00 0.2325 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.1215 3.9326 2572 0.1903 99.00 0.2214 . . 118 . . . . 'X-RAY DIFFRACTION' . 3.9326 53.2493 2606 0.2047 98.00 0.2281 . . 130 . . . . # _database_PDB_matrix.entry_id 3ZMJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3ZMJ _struct.title 'Structure of E.coli rhomboid protease GlpG in complex with monobactam L61' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZMJ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, INTRA-MEMBRANE PROTEASE, ACYL ENZYME, BETA LACTAMS, ANITBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLPG_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P09391 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZMJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P09391 _struct_ref_seq.db_align_beg 92 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 270 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 92 _struct_ref_seq.pdbx_auth_seq_align_end 270 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 3 ? GLY A 24 ? GLY A 94 GLY A 115 1 ? 22 HELX_P HELX_P2 2 GLY A 24 ? ALA A 33 ? GLY A 115 ALA A 124 1 ? 10 HELX_P HELX_P3 3 ASP A 37 ? LYS A 41 ? ASP A 128 LYS A 132 5 ? 5 HELX_P HELX_P4 4 TRP A 45 ? HIS A 50 ? TRP A 136 HIS A 141 1 ? 6 HELX_P HELX_P5 5 ALA A 51 ? MET A 53 ? ALA A 142 MET A 144 5 ? 3 HELX_P HELX_P6 6 SER A 56 ? GLY A 79 ? SER A 147 GLY A 170 1 ? 24 HELX_P HELX_P7 7 GLY A 79 ? GLY A 103 ? GLY A 170 GLY A 194 1 ? 25 HELX_P HELX_P8 8 LEU A 109 ? ASP A 127 ? LEU A 200 ASP A 218 1 ? 19 HELX_P HELX_P9 9 PRO A 128 ? GLY A 131 ? PRO A 219 GLY A 222 5 ? 4 HELX_P HELX_P10 10 GLN A 135 ? PHE A 151 ? GLN A 226 PHE A 242 1 ? 17 HELX_P HELX_P11 11 ALA A 159 ? SER A 178 ? ALA A 250 SER A 269 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id L61 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C2 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id L61 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.397 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id L61 _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id SER _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 110 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id L61 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 401 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id SER _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 201 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C2 _pdbx_modification_feature.modified_residue_id_linking_atom OG _pdbx_modification_feature.modified_residue_id SER _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id L61 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # _pdbx_entry_details.entry_id 3ZMJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;ISOBUTYL(1-PHENYLBUT-3-EN-1-YL)CARBAMATE (L61): L61 IS COVALENTLY BONDED TO S201. BNG 404 IS IN SPECIAL POSITION. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 218 ? ? -161.31 70.26 2 1 GLN A 220 ? ? -54.33 -7.67 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id PHE _pdbx_unobs_or_zero_occ_residues.auth_seq_id 245 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id PHE _pdbx_unobs_or_zero_occ_residues.label_seq_id 154 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BNG C1 C N R 74 BNG C2 C N R 75 BNG C3 C N S 76 BNG C4 C N S 77 BNG C5 C N R 78 BNG C6 C N N 79 BNG "C1'" C N N 80 BNG "C2'" C N N 81 BNG "C3'" C N N 82 BNG "C4'" C N N 83 BNG "C5'" C N N 84 BNG "C6'" C N N 85 BNG "C7'" C N N 86 BNG "C8'" C N N 87 BNG "C9'" C N N 88 BNG O1 O N N 89 BNG O2 O N N 90 BNG O3 O N N 91 BNG O4 O N N 92 BNG O5 O N N 93 BNG O6 O N N 94 BNG H1 H N N 95 BNG H2 H N N 96 BNG H3 H N N 97 BNG H4 H N N 98 BNG H5 H N N 99 BNG H61 H N N 100 BNG H62 H N N 101 BNG "H1'1" H N N 102 BNG "H1'2" H N N 103 BNG "H2'1" H N N 104 BNG "H2'2" H N N 105 BNG "H3'1" H N N 106 BNG "H3'2" H N N 107 BNG "H4'1" H N N 108 BNG "H4'2" H N N 109 BNG "H5'1" H N N 110 BNG "H5'2" H N N 111 BNG "H6'1" H N N 112 BNG "H6'2" H N N 113 BNG "H7'1" H N N 114 BNG "H7'2" H N N 115 BNG "H8'1" H N N 116 BNG "H8'2" H N N 117 BNG "H9'1" H N N 118 BNG "H9'2" H N N 119 BNG "H9'3" H N N 120 BNG HO2 H N N 121 BNG HO3 H N N 122 BNG HO4 H N N 123 BNG HO6 H N N 124 CL CL CL N N 125 CYS N N N N 126 CYS CA C N R 127 CYS C C N N 128 CYS O O N N 129 CYS CB C N N 130 CYS SG S N N 131 CYS OXT O N N 132 CYS H H N N 133 CYS H2 H N N 134 CYS HA H N N 135 CYS HB2 H N N 136 CYS HB3 H N N 137 CYS HG H N N 138 CYS HXT H N N 139 GLN N N N N 140 GLN CA C N S 141 GLN C C N N 142 GLN O O N N 143 GLN CB C N N 144 GLN CG C N N 145 GLN CD C N N 146 GLN OE1 O N N 147 GLN NE2 N N N 148 GLN OXT O N N 149 GLN H H N N 150 GLN H2 H N N 151 GLN HA H N N 152 GLN HB2 H N N 153 GLN HB3 H N N 154 GLN HG2 H N N 155 GLN HG3 H N N 156 GLN HE21 H N N 157 GLN HE22 H N N 158 GLN HXT H N N 159 GLU N N N N 160 GLU CA C N S 161 GLU C C N N 162 GLU O O N N 163 GLU CB C N N 164 GLU CG C N N 165 GLU CD C N N 166 GLU OE1 O N N 167 GLU OE2 O N N 168 GLU OXT O N N 169 GLU H H N N 170 GLU H2 H N N 171 GLU HA H N N 172 GLU HB2 H N N 173 GLU HB3 H N N 174 GLU HG2 H N N 175 GLU HG3 H N N 176 GLU HE2 H N N 177 GLU HXT H N N 178 GLY N N N N 179 GLY CA C N N 180 GLY C C N N 181 GLY O O N N 182 GLY OXT O N N 183 GLY H H N N 184 GLY H2 H N N 185 GLY HA2 H N N 186 GLY HA3 H N N 187 GLY HXT H N N 188 HIS N N N N 189 HIS CA C N S 190 HIS C C N N 191 HIS O O N N 192 HIS CB C N N 193 HIS CG C Y N 194 HIS ND1 N Y N 195 HIS CD2 C Y N 196 HIS CE1 C Y N 197 HIS NE2 N Y N 198 HIS OXT O N N 199 HIS H H N N 200 HIS H2 H N N 201 HIS HA H N N 202 HIS HB2 H N N 203 HIS HB3 H N N 204 HIS HD1 H N N 205 HIS HD2 H N N 206 HIS HE1 H N N 207 HIS HE2 H N N 208 HIS HXT H N N 209 HOH O O N N 210 HOH H1 H N N 211 HOH H2 H N N 212 ILE N N N N 213 ILE CA C N S 214 ILE C C N N 215 ILE O O N N 216 ILE CB C N S 217 ILE CG1 C N N 218 ILE CG2 C N N 219 ILE CD1 C N N 220 ILE OXT O N N 221 ILE H H N N 222 ILE H2 H N N 223 ILE HA H N N 224 ILE HB H N N 225 ILE HG12 H N N 226 ILE HG13 H N N 227 ILE HG21 H N N 228 ILE HG22 H N N 229 ILE HG23 H N N 230 ILE HD11 H N N 231 ILE HD12 H N N 232 ILE HD13 H N N 233 ILE HXT H N N 234 L61 O1 O N N 235 L61 C2 C N N 236 L61 C3 C N N 237 L61 C4 C N R 238 L61 N1 N N N 239 L61 C5 C N N 240 L61 O3 O N N 241 L61 C6 C N N 242 L61 O2 O N N 243 L61 C10 C Y N 244 L61 C15 C Y N 245 L61 C14 C Y N 246 L61 C13 C Y N 247 L61 C12 C Y N 248 L61 C11 C Y N 249 L61 C7 C N N 250 L61 C8 C N N 251 L61 C9 C N N 252 L61 HC2 H N N 253 L61 H31C H N N 254 L61 H32C H N N 255 L61 H4 H N N 256 L61 H1 H N N 257 L61 H61C H N N 258 L61 H62C H N N 259 L61 H7 H N N 260 L61 H15 H N N 261 L61 H11 H N N 262 L61 H14 H N N 263 L61 H13 H N N 264 L61 H12 H N N 265 L61 H81C H N N 266 L61 H82C H N N 267 L61 H83C H N N 268 L61 H91C H N N 269 L61 H92C H N N 270 L61 H93C H N N 271 LEU N N N N 272 LEU CA C N S 273 LEU C C N N 274 LEU O O N N 275 LEU CB C N N 276 LEU CG C N N 277 LEU CD1 C N N 278 LEU CD2 C N N 279 LEU OXT O N N 280 LEU H H N N 281 LEU H2 H N N 282 LEU HA H N N 283 LEU HB2 H N N 284 LEU HB3 H N N 285 LEU HG H N N 286 LEU HD11 H N N 287 LEU HD12 H N N 288 LEU HD13 H N N 289 LEU HD21 H N N 290 LEU HD22 H N N 291 LEU HD23 H N N 292 LEU HXT H N N 293 LYS N N N N 294 LYS CA C N S 295 LYS C C N N 296 LYS O O N N 297 LYS CB C N N 298 LYS CG C N N 299 LYS CD C N N 300 LYS CE C N N 301 LYS NZ N N N 302 LYS OXT O N N 303 LYS H H N N 304 LYS H2 H N N 305 LYS HA H N N 306 LYS HB2 H N N 307 LYS HB3 H N N 308 LYS HG2 H N N 309 LYS HG3 H N N 310 LYS HD2 H N N 311 LYS HD3 H N N 312 LYS HE2 H N N 313 LYS HE3 H N N 314 LYS HZ1 H N N 315 LYS HZ2 H N N 316 LYS HZ3 H N N 317 LYS HXT H N N 318 MET N N N N 319 MET CA C N S 320 MET C C N N 321 MET O O N N 322 MET CB C N N 323 MET CG C N N 324 MET SD S N N 325 MET CE C N N 326 MET OXT O N N 327 MET H H N N 328 MET H2 H N N 329 MET HA H N N 330 MET HB2 H N N 331 MET HB3 H N N 332 MET HG2 H N N 333 MET HG3 H N N 334 MET HE1 H N N 335 MET HE2 H N N 336 MET HE3 H N N 337 MET HXT H N N 338 PHE N N N N 339 PHE CA C N S 340 PHE C C N N 341 PHE O O N N 342 PHE CB C N N 343 PHE CG C Y N 344 PHE CD1 C Y N 345 PHE CD2 C Y N 346 PHE CE1 C Y N 347 PHE CE2 C Y N 348 PHE CZ C Y N 349 PHE OXT O N N 350 PHE H H N N 351 PHE H2 H N N 352 PHE HA H N N 353 PHE HB2 H N N 354 PHE HB3 H N N 355 PHE HD1 H N N 356 PHE HD2 H N N 357 PHE HE1 H N N 358 PHE HE2 H N N 359 PHE HZ H N N 360 PHE HXT H N N 361 PRO N N N N 362 PRO CA C N S 363 PRO C C N N 364 PRO O O N N 365 PRO CB C N N 366 PRO CG C N N 367 PRO CD C N N 368 PRO OXT O N N 369 PRO H H N N 370 PRO HA H N N 371 PRO HB2 H N N 372 PRO HB3 H N N 373 PRO HG2 H N N 374 PRO HG3 H N N 375 PRO HD2 H N N 376 PRO HD3 H N N 377 PRO HXT H N N 378 SER N N N N 379 SER CA C N S 380 SER C C N N 381 SER O O N N 382 SER CB C N N 383 SER OG O N N 384 SER OXT O N N 385 SER H H N N 386 SER H2 H N N 387 SER HA H N N 388 SER HB2 H N N 389 SER HB3 H N N 390 SER HG H N N 391 SER HXT H N N 392 THR N N N N 393 THR CA C N S 394 THR C C N N 395 THR O O N N 396 THR CB C N R 397 THR OG1 O N N 398 THR CG2 C N N 399 THR OXT O N N 400 THR H H N N 401 THR H2 H N N 402 THR HA H N N 403 THR HB H N N 404 THR HG1 H N N 405 THR HG21 H N N 406 THR HG22 H N N 407 THR HG23 H N N 408 THR HXT H N N 409 TRP N N N N 410 TRP CA C N S 411 TRP C C N N 412 TRP O O N N 413 TRP CB C N N 414 TRP CG C Y N 415 TRP CD1 C Y N 416 TRP CD2 C Y N 417 TRP NE1 N Y N 418 TRP CE2 C Y N 419 TRP CE3 C Y N 420 TRP CZ2 C Y N 421 TRP CZ3 C Y N 422 TRP CH2 C Y N 423 TRP OXT O N N 424 TRP H H N N 425 TRP H2 H N N 426 TRP HA H N N 427 TRP HB2 H N N 428 TRP HB3 H N N 429 TRP HD1 H N N 430 TRP HE1 H N N 431 TRP HE3 H N N 432 TRP HZ2 H N N 433 TRP HZ3 H N N 434 TRP HH2 H N N 435 TRP HXT H N N 436 TYR N N N N 437 TYR CA C N S 438 TYR C C N N 439 TYR O O N N 440 TYR CB C N N 441 TYR CG C Y N 442 TYR CD1 C Y N 443 TYR CD2 C Y N 444 TYR CE1 C Y N 445 TYR CE2 C Y N 446 TYR CZ C Y N 447 TYR OH O N N 448 TYR OXT O N N 449 TYR H H N N 450 TYR H2 H N N 451 TYR HA H N N 452 TYR HB2 H N N 453 TYR HB3 H N N 454 TYR HD1 H N N 455 TYR HD2 H N N 456 TYR HE1 H N N 457 TYR HE2 H N N 458 TYR HH H N N 459 TYR HXT H N N 460 VAL N N N N 461 VAL CA C N S 462 VAL C C N N 463 VAL O O N N 464 VAL CB C N N 465 VAL CG1 C N N 466 VAL CG2 C N N 467 VAL OXT O N N 468 VAL H H N N 469 VAL H2 H N N 470 VAL HA H N N 471 VAL HB H N N 472 VAL HG11 H N N 473 VAL HG12 H N N 474 VAL HG13 H N N 475 VAL HG21 H N N 476 VAL HG22 H N N 477 VAL HG23 H N N 478 VAL HXT H N N 479 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BNG C1 C2 sing N N 70 BNG C1 O1 sing N N 71 BNG C1 O5 sing N N 72 BNG C1 H1 sing N N 73 BNG C2 C3 sing N N 74 BNG C2 O2 sing N N 75 BNG C2 H2 sing N N 76 BNG C3 C4 sing N N 77 BNG C3 O3 sing N N 78 BNG C3 H3 sing N N 79 BNG C4 C5 sing N N 80 BNG C4 O4 sing N N 81 BNG C4 H4 sing N N 82 BNG C5 C6 sing N N 83 BNG C5 O5 sing N N 84 BNG C5 H5 sing N N 85 BNG C6 O6 sing N N 86 BNG C6 H61 sing N N 87 BNG C6 H62 sing N N 88 BNG "C1'" "C2'" sing N N 89 BNG "C1'" O1 sing N N 90 BNG "C1'" "H1'1" sing N N 91 BNG "C1'" "H1'2" sing N N 92 BNG "C2'" "C3'" sing N N 93 BNG "C2'" "H2'1" sing N N 94 BNG "C2'" "H2'2" sing N N 95 BNG "C3'" "C4'" sing N N 96 BNG "C3'" "H3'1" sing N N 97 BNG "C3'" "H3'2" sing N N 98 BNG "C4'" "C5'" sing N N 99 BNG "C4'" "H4'1" sing N N 100 BNG "C4'" "H4'2" sing N N 101 BNG "C5'" "C6'" sing N N 102 BNG "C5'" "H5'1" sing N N 103 BNG "C5'" "H5'2" sing N N 104 BNG "C6'" "C7'" sing N N 105 BNG "C6'" "H6'1" sing N N 106 BNG "C6'" "H6'2" sing N N 107 BNG "C7'" "C8'" sing N N 108 BNG "C7'" "H7'1" sing N N 109 BNG "C7'" "H7'2" sing N N 110 BNG "C8'" "C9'" sing N N 111 BNG "C8'" "H8'1" sing N N 112 BNG "C8'" "H8'2" sing N N 113 BNG "C9'" "H9'1" sing N N 114 BNG "C9'" "H9'2" sing N N 115 BNG "C9'" "H9'3" sing N N 116 BNG O2 HO2 sing N N 117 BNG O3 HO3 sing N N 118 BNG O4 HO4 sing N N 119 BNG O6 HO6 sing N N 120 CYS N CA sing N N 121 CYS N H sing N N 122 CYS N H2 sing N N 123 CYS CA C sing N N 124 CYS CA CB sing N N 125 CYS CA HA sing N N 126 CYS C O doub N N 127 CYS C OXT sing N N 128 CYS CB SG sing N N 129 CYS CB HB2 sing N N 130 CYS CB HB3 sing N N 131 CYS SG HG sing N N 132 CYS OXT HXT sing N N 133 GLN N CA sing N N 134 GLN N H sing N N 135 GLN N H2 sing N N 136 GLN CA C sing N N 137 GLN CA CB sing N N 138 GLN CA HA sing N N 139 GLN C O doub N N 140 GLN C OXT sing N N 141 GLN CB CG sing N N 142 GLN CB HB2 sing N N 143 GLN CB HB3 sing N N 144 GLN CG CD sing N N 145 GLN CG HG2 sing N N 146 GLN CG HG3 sing N N 147 GLN CD OE1 doub N N 148 GLN CD NE2 sing N N 149 GLN NE2 HE21 sing N N 150 GLN NE2 HE22 sing N N 151 GLN OXT HXT sing N N 152 GLU N CA sing N N 153 GLU N H sing N N 154 GLU N H2 sing N N 155 GLU CA C sing N N 156 GLU CA CB sing N N 157 GLU CA HA sing N N 158 GLU C O doub N N 159 GLU C OXT sing N N 160 GLU CB CG sing N N 161 GLU CB HB2 sing N N 162 GLU CB HB3 sing N N 163 GLU CG CD sing N N 164 GLU CG HG2 sing N N 165 GLU CG HG3 sing N N 166 GLU CD OE1 doub N N 167 GLU CD OE2 sing N N 168 GLU OE2 HE2 sing N N 169 GLU OXT HXT sing N N 170 GLY N CA sing N N 171 GLY N H sing N N 172 GLY N H2 sing N N 173 GLY CA C sing N N 174 GLY CA HA2 sing N N 175 GLY CA HA3 sing N N 176 GLY C O doub N N 177 GLY C OXT sing N N 178 GLY OXT HXT sing N N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 L61 O1 C2 doub N N 224 L61 C2 C3 sing N N 225 L61 C2 HC2 sing N N 226 L61 C3 C4 sing N N 227 L61 C4 N1 sing N N 228 L61 C4 C10 sing N N 229 L61 N1 C5 sing N N 230 L61 C5 O3 sing N N 231 L61 C5 O2 doub N N 232 L61 O3 C6 sing N N 233 L61 C6 C7 sing N N 234 L61 C10 C15 sing Y N 235 L61 C10 C11 doub Y N 236 L61 C15 C14 doub Y N 237 L61 C14 C13 sing Y N 238 L61 C13 C12 doub Y N 239 L61 C12 C11 sing Y N 240 L61 C7 C8 sing N N 241 L61 C7 C9 sing N N 242 L61 C3 H31C sing N N 243 L61 C3 H32C sing N N 244 L61 C4 H4 sing N N 245 L61 N1 H1 sing N N 246 L61 C6 H61C sing N N 247 L61 C6 H62C sing N N 248 L61 C7 H7 sing N N 249 L61 C15 H15 sing N N 250 L61 C11 H11 sing N N 251 L61 C14 H14 sing N N 252 L61 C13 H13 sing N N 253 L61 C12 H12 sing N N 254 L61 C8 H81C sing N N 255 L61 C8 H82C sing N N 256 L61 C8 H83C sing N N 257 L61 C9 H91C sing N N 258 L61 C9 H92C sing N N 259 L61 C9 H93C sing N N 260 LEU N CA sing N N 261 LEU N H sing N N 262 LEU N H2 sing N N 263 LEU CA C sing N N 264 LEU CA CB sing N N 265 LEU CA HA sing N N 266 LEU C O doub N N 267 LEU C OXT sing N N 268 LEU CB CG sing N N 269 LEU CB HB2 sing N N 270 LEU CB HB3 sing N N 271 LEU CG CD1 sing N N 272 LEU CG CD2 sing N N 273 LEU CG HG sing N N 274 LEU CD1 HD11 sing N N 275 LEU CD1 HD12 sing N N 276 LEU CD1 HD13 sing N N 277 LEU CD2 HD21 sing N N 278 LEU CD2 HD22 sing N N 279 LEU CD2 HD23 sing N N 280 LEU OXT HXT sing N N 281 LYS N CA sing N N 282 LYS N H sing N N 283 LYS N H2 sing N N 284 LYS CA C sing N N 285 LYS CA CB sing N N 286 LYS CA HA sing N N 287 LYS C O doub N N 288 LYS C OXT sing N N 289 LYS CB CG sing N N 290 LYS CB HB2 sing N N 291 LYS CB HB3 sing N N 292 LYS CG CD sing N N 293 LYS CG HG2 sing N N 294 LYS CG HG3 sing N N 295 LYS CD CE sing N N 296 LYS CD HD2 sing N N 297 LYS CD HD3 sing N N 298 LYS CE NZ sing N N 299 LYS CE HE2 sing N N 300 LYS CE HE3 sing N N 301 LYS NZ HZ1 sing N N 302 LYS NZ HZ2 sing N N 303 LYS NZ HZ3 sing N N 304 LYS OXT HXT sing N N 305 MET N CA sing N N 306 MET N H sing N N 307 MET N H2 sing N N 308 MET CA C sing N N 309 MET CA CB sing N N 310 MET CA HA sing N N 311 MET C O doub N N 312 MET C OXT sing N N 313 MET CB CG sing N N 314 MET CB HB2 sing N N 315 MET CB HB3 sing N N 316 MET CG SD sing N N 317 MET CG HG2 sing N N 318 MET CG HG3 sing N N 319 MET SD CE sing N N 320 MET CE HE1 sing N N 321 MET CE HE2 sing N N 322 MET CE HE3 sing N N 323 MET OXT HXT sing N N 324 PHE N CA sing N N 325 PHE N H sing N N 326 PHE N H2 sing N N 327 PHE CA C sing N N 328 PHE CA CB sing N N 329 PHE CA HA sing N N 330 PHE C O doub N N 331 PHE C OXT sing N N 332 PHE CB CG sing N N 333 PHE CB HB2 sing N N 334 PHE CB HB3 sing N N 335 PHE CG CD1 doub Y N 336 PHE CG CD2 sing Y N 337 PHE CD1 CE1 sing Y N 338 PHE CD1 HD1 sing N N 339 PHE CD2 CE2 doub Y N 340 PHE CD2 HD2 sing N N 341 PHE CE1 CZ doub Y N 342 PHE CE1 HE1 sing N N 343 PHE CE2 CZ sing Y N 344 PHE CE2 HE2 sing N N 345 PHE CZ HZ sing N N 346 PHE OXT HXT sing N N 347 PRO N CA sing N N 348 PRO N CD sing N N 349 PRO N H sing N N 350 PRO CA C sing N N 351 PRO CA CB sing N N 352 PRO CA HA sing N N 353 PRO C O doub N N 354 PRO C OXT sing N N 355 PRO CB CG sing N N 356 PRO CB HB2 sing N N 357 PRO CB HB3 sing N N 358 PRO CG CD sing N N 359 PRO CG HG2 sing N N 360 PRO CG HG3 sing N N 361 PRO CD HD2 sing N N 362 PRO CD HD3 sing N N 363 PRO OXT HXT sing N N 364 SER N CA sing N N 365 SER N H sing N N 366 SER N H2 sing N N 367 SER CA C sing N N 368 SER CA CB sing N N 369 SER CA HA sing N N 370 SER C O doub N N 371 SER C OXT sing N N 372 SER CB OG sing N N 373 SER CB HB2 sing N N 374 SER CB HB3 sing N N 375 SER OG HG sing N N 376 SER OXT HXT sing N N 377 THR N CA sing N N 378 THR N H sing N N 379 THR N H2 sing N N 380 THR CA C sing N N 381 THR CA CB sing N N 382 THR CA HA sing N N 383 THR C O doub N N 384 THR C OXT sing N N 385 THR CB OG1 sing N N 386 THR CB CG2 sing N N 387 THR CB HB sing N N 388 THR OG1 HG1 sing N N 389 THR CG2 HG21 sing N N 390 THR CG2 HG22 sing N N 391 THR CG2 HG23 sing N N 392 THR OXT HXT sing N N 393 TRP N CA sing N N 394 TRP N H sing N N 395 TRP N H2 sing N N 396 TRP CA C sing N N 397 TRP CA CB sing N N 398 TRP CA HA sing N N 399 TRP C O doub N N 400 TRP C OXT sing N N 401 TRP CB CG sing N N 402 TRP CB HB2 sing N N 403 TRP CB HB3 sing N N 404 TRP CG CD1 doub Y N 405 TRP CG CD2 sing Y N 406 TRP CD1 NE1 sing Y N 407 TRP CD1 HD1 sing N N 408 TRP CD2 CE2 doub Y N 409 TRP CD2 CE3 sing Y N 410 TRP NE1 CE2 sing Y N 411 TRP NE1 HE1 sing N N 412 TRP CE2 CZ2 sing Y N 413 TRP CE3 CZ3 doub Y N 414 TRP CE3 HE3 sing N N 415 TRP CZ2 CH2 doub Y N 416 TRP CZ2 HZ2 sing N N 417 TRP CZ3 CH2 sing Y N 418 TRP CZ3 HZ3 sing N N 419 TRP CH2 HH2 sing N N 420 TRP OXT HXT sing N N 421 TYR N CA sing N N 422 TYR N H sing N N 423 TYR N H2 sing N N 424 TYR CA C sing N N 425 TYR CA CB sing N N 426 TYR CA HA sing N N 427 TYR C O doub N N 428 TYR C OXT sing N N 429 TYR CB CG sing N N 430 TYR CB HB2 sing N N 431 TYR CB HB3 sing N N 432 TYR CG CD1 doub Y N 433 TYR CG CD2 sing Y N 434 TYR CD1 CE1 sing Y N 435 TYR CD1 HD1 sing N N 436 TYR CD2 CE2 doub Y N 437 TYR CD2 HD2 sing N N 438 TYR CE1 CZ doub Y N 439 TYR CE1 HE1 sing N N 440 TYR CE2 CZ sing Y N 441 TYR CE2 HE2 sing N N 442 TYR CZ OH sing N N 443 TYR OH HH sing N N 444 TYR OXT HXT sing N N 445 VAL N CA sing N N 446 VAL N H sing N N 447 VAL N H2 sing N N 448 VAL CA C sing N N 449 VAL CA CB sing N N 450 VAL CA HA sing N N 451 VAL C O doub N N 452 VAL C OXT sing N N 453 VAL CB CG1 sing N N 454 VAL CB CG2 sing N N 455 VAL CB HB sing N N 456 VAL CG1 HG11 sing N N 457 VAL CG1 HG12 sing N N 458 VAL CG1 HG13 sing N N 459 VAL CG2 HG21 sing N N 460 VAL CG2 HG22 sing N N 461 VAL CG2 HG23 sing N N 462 VAL OXT HXT sing N N 463 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2XOV _pdbx_initial_refinement_model.details 'PDB ENTRY 2XOV' # _atom_sites.entry_id 3ZMJ _atom_sites.fract_transf_matrix[1][1] 0.009068 _atom_sites.fract_transf_matrix[1][2] 0.005235 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010471 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_