HEADER VIRAL PROTEIN 11-FEB-13 3ZMO TITLE VP16, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 (VP16-TYPE-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP16; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SUBUNIT OF A STRAND-SWAPPED HOMODIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS PHAGE P23-77; SOURCE 3 ORGANISM_TAXID: 668994; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIR2 (ORF16/PET22B) KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.RISSANEN,J.M.GRIMES,A.PAWLOWSKI,S.MANTYNEN,K.HARLOS,J.K.H.BAMFORD, AUTHOR 2 D.I.STUART REVDAT 5 08-MAY-24 3ZMO 1 REMARK LINK REVDAT 4 08-MAY-19 3ZMO 1 REMARK REVDAT 3 28-JUN-17 3ZMO 1 REMARK REVDAT 2 22-MAY-13 3ZMO 1 JRNL REVDAT 1 15-MAY-13 3ZMO 0 JRNL AUTH I.RISSANEN,J.M.GRIMES,A.PAWLOWSKI,S.MANTYNEN,K.HARLOS, JRNL AUTH 2 J.K.H.BAMFORD,D.I.STUART JRNL TITL BACTERIOPHAGE P23-77 CAPSID PROTEIN STRUCTURES REVEAL THE JRNL TITL 2 ARCHETYPE OF AN ANCIENT BRANCH FROM A MAJOR VIRUS LINEAGE. JRNL REF STRUCTURE V. 21 718 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23623731 JRNL DOI 10.1016/J.STR.2013.02.026 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2738 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2071 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2591 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE : 0.2279 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72650 REMARK 3 B22 (A**2) : 0.72650 REMARK 3 B33 (A**2) : -1.45290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.305 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.103 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.100 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.093 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.093 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1433 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1977 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 480 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 36 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 201 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1433 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 178 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : 3 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1706 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.43 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.90 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 2-16 REMARK 3 ORIGIN FOR THE GROUP (A): 81.7602 -15.1206 34.7436 REMARK 3 T TENSOR REMARK 3 T11: -0.0421 T22: 0.1727 REMARK 3 T33: -0.0880 T12: 0.1044 REMARK 3 T13: -0.0015 T23: 0.1746 REMARK 3 L TENSOR REMARK 3 L11: 0.2828 L22: -0.1157 REMARK 3 L33: 0.1534 L12: -0.2046 REMARK 3 L13: 0.6883 L23: -0.8156 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0014 S13: -0.0049 REMARK 3 S21: 0.0323 S22: 0.0097 S23: -0.0205 REMARK 3 S31: 0.0390 S32: 0.0253 S33: 0.0069 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 17-78 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6117 0.7588 16.8908 REMARK 3 T TENSOR REMARK 3 T11: -0.1749 T22: 0.0508 REMARK 3 T33: -0.0565 T12: -0.0192 REMARK 3 T13: -0.0041 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.1875 L22: 0.3118 REMARK 3 L33: 3.2299 L12: -0.4732 REMARK 3 L13: 0.0837 L23: -0.1344 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.0081 S13: -0.0355 REMARK 3 S21: 0.0590 S22: -0.1208 S23: -0.0345 REMARK 3 S31: -0.0144 S32: -0.2826 S33: 0.1501 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 79-105 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4038 3.7898 19.6123 REMARK 3 T TENSOR REMARK 3 T11: -0.1524 T22: 0.1247 REMARK 3 T33: -0.0639 T12: 0.0090 REMARK 3 T13: 0.0060 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.1125 L22: 1.5019 REMARK 3 L33: 2.9363 L12: -0.3294 REMARK 3 L13: -1.1811 L23: 0.6952 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: 0.0736 S13: 0.0242 REMARK 3 S21: 0.0953 S22: 0.0041 S23: -0.0069 REMARK 3 S31: -0.1021 S32: -0.3305 S33: 0.0679 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 106-126 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2554 2.5416 26.3701 REMARK 3 T TENSOR REMARK 3 T11: -0.1567 T22: 0.2303 REMARK 3 T33: -0.0718 T12: -0.0312 REMARK 3 T13: -0.0141 T23: -0.1140 REMARK 3 L TENSOR REMARK 3 L11: 2.2249 L22: -0.9835 REMARK 3 L33: 3.2774 L12: -0.8871 REMARK 3 L13: -2.7620 L23: 0.9907 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0233 S13: -0.0470 REMARK 3 S21: 0.0380 S22: -0.0770 S23: -0.0086 REMARK 3 S31: 0.0186 S32: -0.1192 S33: 0.0797 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 127-173 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7120 10.6185 21.3906 REMARK 3 T TENSOR REMARK 3 T11: -0.0797 T22: 0.1216 REMARK 3 T33: -0.0328 T12: 0.0659 REMARK 3 T13: -0.0350 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.3853 L22: 1.3815 REMARK 3 L33: 2.1648 L12: -0.2928 REMARK 3 L13: -0.3710 L23: 1.0420 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0015 S13: 0.0612 REMARK 3 S21: 0.1121 S22: -0.0167 S23: -0.0921 REMARK 3 S31: -0.2792 S32: -0.1729 S33: 0.0372 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUE 1 IS DISORDERED REMARK 4 REMARK 4 3ZMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27581 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 62.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.00 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: XIA2, SHELXD, AUTOSHARP, ARP/WARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOUR DIFFUSION SYSTEM, REMARK 280 MICROLITER DROPS OF PROTEIN (2-3 MG/ML IN 20 MM TRIS-BUFFER PH REMARK 280 7.4) MIXED 1:1 WITH A SOLUTION CONSISTING 5%(W/V) PEG1000 AND 5% REMARK 280 (W/V) PEG8000 (DISSOLVED IN AUTOCLAVED WATER)., VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.48000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.74000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 167.48000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.74000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 167.48000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.74000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 167.48000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 123.70000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 123.70000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A1175 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A1176 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 110 O HOH A 2159 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2060 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2211 DISTANCE = 9.46 ANGSTROMS REMARK 525 HOH A2212 DISTANCE = 7.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1175 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 35 O REMARK 620 2 ARG A 35 O 93.3 REMARK 620 3 HOH A2205 O 136.1 127.7 REMARK 620 4 HOH A2205 O 127.7 136.1 28.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1176 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD2 REMARK 620 2 ASP A 63 OD2 99.8 REMARK 620 3 HOH A2100 O 90.8 156.3 REMARK 620 4 HOH A2100 O 156.3 90.8 87.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1179 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZMN RELATED DB: PDB REMARK 900 VP17, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 REMARK 900 RELATED ID: 3ZN4 RELATED DB: PDB REMARK 900 VP16, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 (VP16- TYPE-2) REMARK 900 RELATED ID: 3ZN5 RELATED DB: PDB REMARK 900 VP16, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 (VP16- VIRUS-DERIVED) REMARK 900 RELATED ID: 3ZN6 RELATED DB: PDB REMARK 900 VP16-VP17 COMPLEX, A COMPLEX OF THE TWO MAJOR CAPSID PROTEINS OF REMARK 900 BACTERIOPHAGE P23-77 DBREF 3ZMO A 1 173 UNP C8CHL4 C8CHL4_9VIRU 1 173 SEQRES 1 A 173 MET GLN GLU ALA PHE ASN ARG ILE LYS ALA LEU ARG PRO SEQRES 2 A 173 GLY ALA ARG PRO ALA THR ILE LEU ARG SER GLY PRO GLU SEQRES 3 A 173 PHE SER VAL TYR SER GLY THR GLN ARG VAL LYS VAL GLY SEQRES 4 A 173 GLU PHE VAL VAL PRO ALA GLY ALA SER TRP VAL LEU PRO SEQRES 5 A 173 ASN PRO VAL PRO VAL ILE LEU LYS LEU TYR ASP THR GLY SEQRES 6 A 173 GLY ASN GLN LEU PRO HIS THR THR ASP VAL PHE LEU ALA SEQRES 7 A 173 LYS ARG THR LYS GLY PHE ASP PHE PRO GLU PHE LEU ALA SEQRES 8 A 173 LYS VAL GLN TYR ALA SER TYR TYR ASP LEU THR GLU ALA SEQRES 9 A 173 GLN LEU ARG ASP ALA LYS PHE TYR GLN ASN ILE LEU GLN SEQRES 10 A 173 THR LEU SER PRO LEU ARG ALA PRO GLN PRO PRO GLN GLY SEQRES 11 A 173 VAL VAL LEU ARG GLU GLY ASP VAL LEU GLU VAL TYR VAL SEQRES 12 A 173 GLU ALA PRO ALA GLY VAL THR VAL ASN LEU ASN ASP PRO SEQRES 13 A 173 ARG THR ARG ILE GLU LEU PRO ILE GLY VAL ASP ASN SER SEQRES 14 A 173 ASN PRO THR LEU HET CL A1174 1 HET NA A1175 1 HET NA A1176 1 HET PEG A1177 17 HET PEG A1178 17 HET PEG A1179 17 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 CL CL 1- FORMUL 3 NA 2(NA 1+) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 HOH *212(H2 O) HELIX 1 1 GLN A 2 ARG A 12 1 11 HELIX 2 2 TYR A 95 ASP A 100 1 6 HELIX 3 3 THR A 102 ASP A 108 1 7 HELIX 4 4 PHE A 111 ILE A 115 1 5 SHEET 1 AA 4 ARG A 35 VAL A 42 0 SHEET 2 AA 4 VAL A 138 GLU A 144 -1 O LEU A 139 N PHE A 41 SHEET 3 AA 4 ASP A 74 ARG A 80 -1 O ASP A 74 N GLU A 144 SHEET 4 AA 4 GLU A 88 GLN A 94 -1 O GLU A 88 N LYS A 79 SHEET 1 AB 3 GLY A 130 ARG A 134 0 SHEET 2 AB 3 SER A 48 PRO A 52 -1 O TRP A 49 N LEU A 133 SHEET 3 AB 3 GLY A 165 ASP A 167 -1 O GLY A 165 N VAL A 50 SHEET 1 AC 2 VAL A 55 PRO A 56 0 SHEET 2 AC 2 LEU A 116 GLN A 117 -1 O GLN A 117 N VAL A 55 SHEET 1 AD 2 ILE A 58 LYS A 60 0 SHEET 2 AD 2 ARG A 159 GLU A 161 -1 O ARG A 159 N LYS A 60 LINK O ARG A 35 NA NA A1175 1555 1555 2.73 LINK O ARG A 35 NA NA A1175 4755 1555 2.73 LINK OD2 ASP A 63 NA NA A1176 8555 1555 2.68 LINK OD2 ASP A 63 NA NA A1176 1555 1555 2.68 LINK NA NA A1175 O HOH A2205 1555 1555 2.88 LINK NA NA A1175 O HOH A2205 1555 4755 2.88 LINK NA NA A1176 O HOH A2100 1555 8555 2.88 LINK NA NA A1176 O HOH A2100 1555 1555 2.88 CISPEP 1 ASN A 53 PRO A 54 0 -0.70 SITE 1 AC1 2 ARG A 35 HOH A2056 SITE 1 AC2 2 ARG A 35 HOH A2205 SITE 1 AC3 2 ASP A 63 HOH A2100 SITE 1 AC4 5 ARG A 12 PRO A 171 LEU A 173 HOH A2202 SITE 2 AC4 5 HOH A2204 SITE 1 AC5 7 LYS A 79 GLU A 88 PRO A 121 ARG A 123 SITE 2 AC5 7 PRO A 128 VAL A 131 HOH A2174 SITE 1 AC6 7 ALA A 147 GLY A 148 VAL A 149 THR A 150 SITE 2 AC6 7 HOH A2187 HOH A2207 HOH A2208 CRYST1 61.850 61.850 251.220 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016168 0.009335 0.000000 0.00000 SCALE2 0.000000 0.018669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003981 0.00000