HEADER VIRAL PROTEIN 13-FEB-13 3ZN4 TITLE VP16, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 (VP16-TYPE-2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP16; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SUBUNIT OF A STRAND-SWAPPED HOMODIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS PHAGE P23-77; SOURCE 3 ORGANISM_TAXID: 668994; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIR2 (ORF16/PET22B) KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.RISSANEN,J.M.GRIMES,A.PAWLOWSKI,S.MANTYNEN,K.HARLOS,J.K.H.BAMFORD, AUTHOR 2 D.I.STUART REVDAT 4 20-DEC-23 3ZN4 1 REMARK REVDAT 3 08-MAY-19 3ZN4 1 REMARK REVDAT 2 22-MAY-13 3ZN4 1 JRNL REVDAT 1 15-MAY-13 3ZN4 0 JRNL AUTH I.RISSANEN,J.M.GRIMES,A.PAWLOWSKI,S.MANTYNEN,K.HARLOS, JRNL AUTH 2 J.K.H.BAMFORD,D.I.STUART JRNL TITL BACTERIOPHAGE P23-77 CAPSID PROTEIN STRUCTURES REVEAL THE JRNL TITL 2 ARCHETYPE OF AN ANCIENT BRANCH FROM A MAJOR VIRUS LINEAGE. JRNL REF STRUCTURE V. 21 718 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23623731 JRNL DOI 10.1016/J.STR.2013.02.026 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 37133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1855 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1228 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2012 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1158 REMARK 3 BIN R VALUE (WORKING SET) : 0.2001 REMARK 3 BIN FREE R VALUE : 0.2191 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 70 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13310 REMARK 3 B22 (A**2) : 0.38850 REMARK 3 B33 (A**2) : 0.74460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.98300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.130 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.049 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.052 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.046 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.049 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1293 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1779 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 434 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 31 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 193 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1293 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 162 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 10 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1727 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.41 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.68 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|19 - A|39 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.3275 -14.9533 4.1585 REMARK 3 T TENSOR REMARK 3 T11: -0.0048 T22: -0.0062 REMARK 3 T33: -0.0128 T12: 0.0014 REMARK 3 T13: 0.0068 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.9814 L22: 0.2263 REMARK 3 L33: 0.5287 L12: 0.1664 REMARK 3 L13: -0.7534 L23: -0.0631 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.1364 S13: 0.1059 REMARK 3 S21: 0.0176 S22: 0.0350 S23: 0.0119 REMARK 3 S31: 0.0119 S32: 0.0248 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|40 - A|69 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.4670 -19.0628 0.8917 REMARK 3 T TENSOR REMARK 3 T11: -0.0013 T22: -0.0083 REMARK 3 T33: -0.0011 T12: -0.0040 REMARK 3 T13: 0.0141 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1446 L22: 0.3005 REMARK 3 L33: 0.4092 L12: 0.1030 REMARK 3 L13: 0.1213 L23: -0.1156 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0003 S13: 0.0221 REMARK 3 S21: 0.0327 S22: -0.0133 S23: -0.0134 REMARK 3 S31: 0.0659 S32: 0.0398 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|70 - A|94 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.4427 -22.1843 0.2896 REMARK 3 T TENSOR REMARK 3 T11: 0.0042 T22: -0.0073 REMARK 3 T33: -0.0195 T12: 0.0009 REMARK 3 T13: 0.0088 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.9257 L22: 1.2238 REMARK 3 L33: 1.4926 L12: 0.6192 REMARK 3 L13: 0.5713 L23: 1.2849 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0293 S13: 0.0053 REMARK 3 S21: 0.0250 S22: -0.0006 S23: 0.0186 REMARK 3 S31: -0.0070 S32: -0.0619 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|95 - A|123 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.9725 -22.3173 11.2609 REMARK 3 T TENSOR REMARK 3 T11: -0.0245 T22: -0.0085 REMARK 3 T33: -0.0315 T12: 0.0085 REMARK 3 T13: 0.0104 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.6515 L22: 1.3241 REMARK 3 L33: 1.6275 L12: 0.1096 REMARK 3 L13: 0.5697 L23: 0.3610 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0326 S13: -0.0245 REMARK 3 S21: 0.0618 S22: 0.0498 S23: -0.0514 REMARK 3 S31: 0.0616 S32: 0.1737 S33: -0.0510 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|124 - A|129 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.9855 -39.1508 7.3228 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: -0.0199 REMARK 3 T33: -0.0005 T12: 0.0201 REMARK 3 T13: 0.0306 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0161 L22: 0.0358 REMARK 3 L33: 0.0361 L12: 0.2652 REMARK 3 L13: -0.0735 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0094 S13: -0.0058 REMARK 3 S21: -0.0006 S22: 0.0059 S23: 0.0115 REMARK 3 S31: -0.0054 S32: -0.0035 S33: -0.0060 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|130 - A|167 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.4616 -17.4275 -0.5790 REMARK 3 T TENSOR REMARK 3 T11: -0.0085 T22: -0.0101 REMARK 3 T33: -0.0167 T12: 0.0016 REMARK 3 T13: 0.0099 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.6657 L22: 0.8106 REMARK 3 L33: 0.5250 L12: 0.3306 REMARK 3 L13: 0.0001 L23: -0.1044 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: -0.0101 S13: 0.0349 REMARK 3 S21: -0.0450 S22: -0.0121 S23: -0.0062 REMARK 3 S31: -0.0055 S32: 0.0195 S33: 0.0157 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. RESIDUES 1-18 AND REMARK 3 168-173 ARE ALTERNATE CONFORMATIONS WERE MODELLED. REMARK 4 REMARK 4 3ZN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37146 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 34.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZMO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOUR DIFFUSION SYSTEM REMARK 280 IN A 96-WELL PLATE, 200 NL OF PROTEIN (2-3 MG/ML IN 20 MM TRIS- REMARK 280 BUFFER PH 7.4) MIXED WITH 200 NL SOLUTION CONSISTING 20%(W/V) REMARK 280 PEG6000 AND 0.1 M CITRATE PH 4., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.30000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2040 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2054 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2055 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 PHE A 5 REMARK 465 ASN A 6 REMARK 465 ARG A 7 REMARK 465 ILE A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 ARG A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 ASN A 168 REMARK 465 SER A 169 REMARK 465 ASN A 170 REMARK 465 PRO A 171 REMARK 465 THR A 172 REMARK 465 LEU A 173 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 40 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 167 O HOH A 2250 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2003 O HOH A 2250 2555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 123 65.57 74.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2053 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2086 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A2254 DISTANCE = 9.04 ANGSTROMS REMARK 525 HOH A2255 DISTANCE = 8.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZMN RELATED DB: PDB REMARK 900 VP17, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 REMARK 900 RELATED ID: 3ZMO RELATED DB: PDB REMARK 900 VP16, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 (VP16- TYPE-1) REMARK 900 RELATED ID: 3ZN5 RELATED DB: PDB REMARK 900 VP16, A CAPSID PROTEIN OF BACTERIOPHAGE P23-77 (VP16- VIRUS-DERIVED) REMARK 900 RELATED ID: 3ZN6 RELATED DB: PDB REMARK 900 VP16-VP17 COMPLEX, A COMPLEX OF THE TWO MAJOR CAPSID PROTEINS OF REMARK 900 BACTERIOPHAGE P23-77 DBREF 3ZN4 A 1 173 UNP C8CHL4 C8CHL4_9VIRU 1 173 SEQRES 1 A 173 MET GLN GLU ALA PHE ASN ARG ILE LYS ALA LEU ARG PRO SEQRES 2 A 173 GLY ALA ARG PRO ALA THR ILE LEU ARG SER GLY PRO GLU SEQRES 3 A 173 PHE SER VAL TYR SER GLY THR GLN ARG VAL LYS VAL GLY SEQRES 4 A 173 GLU PHE VAL VAL PRO ALA GLY ALA SER TRP VAL LEU PRO SEQRES 5 A 173 ASN PRO VAL PRO VAL ILE LEU LYS LEU TYR ASP THR GLY SEQRES 6 A 173 GLY ASN GLN LEU PRO HIS THR THR ASP VAL PHE LEU ALA SEQRES 7 A 173 LYS ARG THR LYS GLY PHE ASP PHE PRO GLU PHE LEU ALA SEQRES 8 A 173 LYS VAL GLN TYR ALA SER TYR TYR ASP LEU THR GLU ALA SEQRES 9 A 173 GLN LEU ARG ASP ALA LYS PHE TYR GLN ASN ILE LEU GLN SEQRES 10 A 173 THR LEU SER PRO LEU ARG ALA PRO GLN PRO PRO GLN GLY SEQRES 11 A 173 VAL VAL LEU ARG GLU GLY ASP VAL LEU GLU VAL TYR VAL SEQRES 12 A 173 GLU ALA PRO ALA GLY VAL THR VAL ASN LEU ASN ASP PRO SEQRES 13 A 173 ARG THR ARG ILE GLU LEU PRO ILE GLY VAL ASP ASN SER SEQRES 14 A 173 ASN PRO THR LEU HET CIT A1168 13 HET CL A1169 1 HETNAM CIT CITRIC ACID HETNAM CL CHLORIDE ION FORMUL 2 CIT C6 H8 O7 FORMUL 3 CL CL 1- FORMUL 4 HOH *255(H2 O) HELIX 1 1 TYR A 95 LEU A 101 1 7 HELIX 2 2 THR A 102 ARG A 107 1 6 HELIX 3 3 ASP A 108 LYS A 110 5 3 HELIX 4 4 PHE A 111 ILE A 115 1 5 SHEET 1 AA 4 VAL A 36 VAL A 42 0 SHEET 2 AA 4 VAL A 138 GLU A 144 -1 O LEU A 139 N PHE A 41 SHEET 3 AA 4 ASP A 74 ARG A 80 -1 O ASP A 74 N GLU A 144 SHEET 4 AA 4 GLU A 88 GLN A 94 -1 O GLU A 88 N LYS A 79 SHEET 1 AB 2 SER A 48 LEU A 51 0 SHEET 2 AB 2 VAL A 131 ARG A 134 -1 O VAL A 131 N LEU A 51 SHEET 1 AC 2 VAL A 55 PRO A 56 0 SHEET 2 AC 2 LEU A 116 GLN A 117 -1 O GLN A 117 N VAL A 55 SHEET 1 AD 2 ILE A 58 LYS A 60 0 SHEET 2 AD 2 ARG A 159 GLU A 161 -1 O ARG A 159 N LYS A 60 CISPEP 1 ASN A 53 PRO A 54 0 2.24 CISPEP 2 GLN A 126 PRO A 127 0 2.56 SITE 1 AC1 10 LYS A 79 GLU A 88 ARG A 123 VAL A 131 SITE 2 AC1 10 VAL A 132 ARG A 134 PRO A 156 HOH A2162 SITE 3 AC1 10 HOH A2215 HOH A2253 SITE 1 AC2 3 ARG A 35 PHE A 89 HOH A2055 CRYST1 76.600 68.570 31.580 90.00 96.44 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013055 0.000000 0.001474 0.00000 SCALE2 0.000000 0.014584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.031867 0.00000