HEADER OXIDOREDUCTASE 15-FEB-13 3ZNN TITLE IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: TITLE 2 REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO-ACID OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAAO, DAMOX, DAO, D-AMINO ACID OXIDASE; COMPND 5 EC: 1.4.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE, FLAVOOXIDASE, NEUROTRANSMISSION EXPDTA X-RAY DIFFRACTION AUTHOR S.C.HOPKINS,M.L.R.HEFFERNAN,L.D.SARASWAT,C.A.BOWEN,L.MELNICK, AUTHOR 2 L.W.HARDY,M.A.ORSINI,M.S.ALLEN,P.KOCH,K.L.SPEAR,R.J.FOGLESONG, AUTHOR 3 M.SOUKRI,M.CHYTIL,Q.K.FANG,S.W.JONES,M.A.VARNEY,A.PANATIER, AUTHOR 4 S.H.R.OLIET,L.POLLEGIONI,L.PIUBELLI,G.MOLLA,M.NARDINI,T.H.LARGE REVDAT 3 20-DEC-23 3ZNN 1 REMARK REVDAT 2 22-MAY-13 3ZNN 1 JRNL REVDAT 1 15-MAY-13 3ZNN 0 JRNL AUTH S.C.HOPKINS,M.L.R.HEFFERNAN,L.D.SARASWAT,C.A.BOWEN, JRNL AUTH 2 L.MELNICK,L.W.HARDY,M.A.ORSINI,M.S.ALLEN,P.KOCH,K.L.SPEAR, JRNL AUTH 3 R.J.FOGLESONG,M.SOUKRI,M.CHYTIL,Q.K.FANG,S.W.JONES, JRNL AUTH 4 M.A.VARNEY,A.PANATIER,S.H.R.OLIET,L.POLLEGIONI,L.PIUBELLI, JRNL AUTH 5 G.MOLLA,M.NARDINI,T.H.LARGE JRNL TITL STRUCTURAL, KINETIC, AND PHARMACODYNAMIC MECHANISMS OF JRNL TITL 2 D-AMINO ACID OXIDASE INHIBITION BY SMALL MOLECULES. JRNL REF J.MED.CHEM. V. 56 3710 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23631755 JRNL DOI 10.1021/JM4002583 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 51587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2602 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.43 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3779 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3007 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3579 REMARK 3 BIN R VALUE (WORKING SET) : 0.2986 REMARK 3 BIN FREE R VALUE : 0.3393 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 200 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 194 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35600 REMARK 3 B22 (A**2) : -0.04130 REMARK 3 B33 (A**2) : -0.31480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15650 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.277 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.195 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.176 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.193 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.177 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5959 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8148 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2019 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 170 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 880 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5959 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 749 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7153 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS WERE MODELED REMARK 3 STEREOCHEMICALLY. POOR DENSITY IS PRESENT FOR RESIDUES A57, A58, REMARK 3 A59, A60, A61, A336, A337, A338, A339, A340, B59, B60, B61, B82, REMARK 3 B83, B338, B339, B340. FINAL STRUCTURE HAS NO RESIDUES IN THE REMARK 3 DISALLOWED REGION OF THE RAMACHANDRAN PLOT AS DEFINED IN THE REMARK 3 CCP4 PROCHECK PROGRAM. REMARK 4 REMARK 4 3ZNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51647 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 1.730 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.67 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DU8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.34000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 341 REMARK 465 MET A 342 REMARK 465 PRO A 343 REMARK 465 PRO A 344 REMARK 465 SER A 345 REMARK 465 HIS A 346 REMARK 465 LEU A 347 REMARK 465 ARG B 341 REMARK 465 MET B 342 REMARK 465 PRO B 343 REMARK 465 PRO B 344 REMARK 465 SER B 345 REMARK 465 HIS B 346 REMARK 465 LEU B 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 53 108.16 -165.18 REMARK 500 ASP A 58 123.75 -37.07 REMARK 500 SER A 136 -159.48 -123.88 REMARK 500 TYR A 224 15.36 58.90 REMARK 500 ARG A 297 58.56 -107.48 REMARK 500 TYR A 314 26.02 -142.90 REMARK 500 LYS A 337 14.39 -68.93 REMARK 500 LEU A 339 33.53 -141.48 REMARK 500 GLN B 53 105.98 -165.29 REMARK 500 SER B 136 -158.61 -128.36 REMARK 500 TYR B 224 19.77 52.66 REMARK 500 TYR B 314 30.19 -144.62 REMARK 500 LYS B 337 -73.46 -61.54 REMARK 500 LEU B 339 -60.66 -107.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2153 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B2043 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B2102 DISTANCE = 6.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4WL A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4WL B 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1347 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZNO RELATED DB: PDB REMARK 900 IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REMARK 900 REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN REMARK 900 RELATED ID: 3ZNP RELATED DB: PDB REMARK 900 IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REMARK 900 REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN REMARK 900 RELATED ID: 3ZNQ RELATED DB: PDB REMARK 900 IN VITRO AND IN VIVO INHIBITION OF HUMAN D-AMINO ACID OXIDASE: REMARK 900 REGULATION OF D-SERINE CONCENTRATION IN THE BRAIN DBREF 3ZNN A 1 347 UNP P14920 OXDA_HUMAN 1 347 DBREF 3ZNN B 1 347 UNP P14920 OXDA_HUMAN 1 347 SEQRES 1 A 347 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 A 347 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 A 347 LEU GLN PRO LEU ASP ILE LYS VAL TYR ALA ASP ARG PHE SEQRES 4 A 347 THR PRO LEU THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 A 347 GLN PRO TYR LEU SER ASP PRO ASN ASN PRO GLN GLU ALA SEQRES 6 A 347 ASP TRP SER GLN GLN THR PHE ASP TYR LEU LEU SER HIS SEQRES 7 A 347 VAL HIS SER PRO ASN ALA GLU ASN LEU GLY LEU PHE LEU SEQRES 8 A 347 ILE SER GLY TYR ASN LEU PHE HIS GLU ALA ILE PRO ASP SEQRES 9 A 347 PRO SER TRP LYS ASP THR VAL LEU GLY PHE ARG LYS LEU SEQRES 10 A 347 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR GLY TYR SEQRES 11 A 347 GLY TRP PHE HIS THR SER LEU ILE LEU GLU GLY LYS ASN SEQRES 12 A 347 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 A 347 VAL LYS PHE PHE GLN ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 A 347 VAL ALA ARG GLU GLY ALA ASP VAL ILE VAL ASN CYS THR SEQRES 15 A 347 GLY VAL TRP ALA GLY ALA LEU GLN ARG ASP PRO LEU LEU SEQRES 16 A 347 GLN PRO GLY ARG GLY GLN ILE MET LYS VAL ASP ALA PRO SEQRES 17 A 347 TRP MET LYS HIS PHE ILE LEU THR HIS ASP PRO GLU ARG SEQRES 18 A 347 GLY ILE TYR ASN SER PRO TYR ILE ILE PRO GLY THR GLN SEQRES 19 A 347 THR VAL THR LEU GLY GLY ILE PHE GLN LEU GLY ASN TRP SEQRES 20 A 347 SER GLU LEU ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 A 347 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASN ALA SEQRES 22 A 347 ARG ILE ILE GLY GLU ARG THR GLY PHE ARG PRO VAL ARG SEQRES 23 A 347 PRO GLN ILE ARG LEU GLU ARG GLU GLN LEU ARG THR GLY SEQRES 24 A 347 PRO SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 A 347 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 A 347 ALA ALA LYS LEU PHE GLY ARG ILE LEU GLU GLU LYS LYS SEQRES 27 A 347 LEU SER ARG MET PRO PRO SER HIS LEU SEQRES 1 B 347 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 B 347 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 B 347 LEU GLN PRO LEU ASP ILE LYS VAL TYR ALA ASP ARG PHE SEQRES 4 B 347 THR PRO LEU THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 B 347 GLN PRO TYR LEU SER ASP PRO ASN ASN PRO GLN GLU ALA SEQRES 6 B 347 ASP TRP SER GLN GLN THR PHE ASP TYR LEU LEU SER HIS SEQRES 7 B 347 VAL HIS SER PRO ASN ALA GLU ASN LEU GLY LEU PHE LEU SEQRES 8 B 347 ILE SER GLY TYR ASN LEU PHE HIS GLU ALA ILE PRO ASP SEQRES 9 B 347 PRO SER TRP LYS ASP THR VAL LEU GLY PHE ARG LYS LEU SEQRES 10 B 347 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR GLY TYR SEQRES 11 B 347 GLY TRP PHE HIS THR SER LEU ILE LEU GLU GLY LYS ASN SEQRES 12 B 347 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 B 347 VAL LYS PHE PHE GLN ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 B 347 VAL ALA ARG GLU GLY ALA ASP VAL ILE VAL ASN CYS THR SEQRES 15 B 347 GLY VAL TRP ALA GLY ALA LEU GLN ARG ASP PRO LEU LEU SEQRES 16 B 347 GLN PRO GLY ARG GLY GLN ILE MET LYS VAL ASP ALA PRO SEQRES 17 B 347 TRP MET LYS HIS PHE ILE LEU THR HIS ASP PRO GLU ARG SEQRES 18 B 347 GLY ILE TYR ASN SER PRO TYR ILE ILE PRO GLY THR GLN SEQRES 19 B 347 THR VAL THR LEU GLY GLY ILE PHE GLN LEU GLY ASN TRP SEQRES 20 B 347 SER GLU LEU ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 B 347 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASN ALA SEQRES 22 B 347 ARG ILE ILE GLY GLU ARG THR GLY PHE ARG PRO VAL ARG SEQRES 23 B 347 PRO GLN ILE ARG LEU GLU ARG GLU GLN LEU ARG THR GLY SEQRES 24 B 347 PRO SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 B 347 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 B 347 ALA ALA LYS LEU PHE GLY ARG ILE LEU GLU GLU LYS LYS SEQRES 27 B 347 LEU SER ARG MET PRO PRO SER HIS LEU HET FAD A 350 53 HET 4WL A 360 11 HET GOL A1341 6 HET GOL A1342 6 HET GOL A1343 6 HET GOL A1344 6 HET GOL A1345 6 HET GOL A1346 6 HET GOL A1347 6 HET FAD B 350 53 HET 4WL B 360 11 HET GOL B1341 6 HET GOL B1342 6 HET GOL B1343 6 HET GOL B1344 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 4WL 4H-THIENO[3,2-B]PYROLE-5-CARBOXYLIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 4WL 2(C7 H5 N O2 S) FORMUL 5 GOL 11(C3 H8 O3) FORMUL 18 HOH *387(H2 O) HELIX 1 1 GLY A 9 HIS A 24 1 16 HELIX 2 2 THR A 43 ALA A 48 1 6 HELIX 3 3 PRO A 62 HIS A 78 1 17 HELIX 4 4 ASN A 83 GLY A 88 1 6 HELIX 5 5 THR A 118 ASP A 123 1 6 HELIX 6 6 GLU A 140 ARG A 155 1 16 HELIX 7 7 SER A 166 GLU A 173 1 8 HELIX 8 8 THR A 182 LEU A 189 5 8 HELIX 9 9 ASN A 252 GLU A 267 1 16 HELIX 10 10 PRO A 268 ALA A 273 5 6 HELIX 11 11 TYR A 314 LYS A 337 1 24 HELIX 12 12 GLY B 9 HIS B 24 1 16 HELIX 13 13 THR B 43 VAL B 47 5 5 HELIX 14 14 PRO B 62 VAL B 79 1 18 HELIX 15 15 ASN B 83 GLY B 88 1 6 HELIX 16 16 THR B 118 ASP B 123 1 6 HELIX 17 17 GLU B 140 GLU B 154 1 15 HELIX 18 18 SER B 166 GLU B 173 1 8 HELIX 19 19 THR B 182 LEU B 189 5 8 HELIX 20 20 ASN B 252 GLU B 267 1 16 HELIX 21 21 PRO B 268 ALA B 273 5 6 HELIX 22 22 HIS B 311 GLY B 313 5 3 HELIX 23 23 TYR B 314 LYS B 338 1 25 SHEET 1 AA 6 LYS A 158 GLN A 161 0 SHEET 2 AA 6 ASP A 31 ALA A 36 1 O ILE A 32 N LYS A 158 SHEET 3 AA 6 ARG A 2 ILE A 6 1 O VAL A 3 N LYS A 33 SHEET 4 AA 6 VAL A 177 ASN A 180 1 O VAL A 177 N VAL A 4 SHEET 5 AA 6 THR A 303 TYR A 309 1 O GLU A 304 N ILE A 178 SHEET 6 AA 6 ARG A 290 LEU A 296 -1 O ARG A 290 N TYR A 309 SHEET 1 AB 8 LEU A 112 LYS A 116 0 SHEET 2 AB 8 TYR A 130 LEU A 139 -1 O PHE A 133 N ARG A 115 SHEET 3 AB 8 LEU A 89 PHE A 98 -1 O PHE A 90 N ILE A 138 SHEET 4 AB 8 PHE A 213 THR A 216 1 O PHE A 213 N TYR A 95 SHEET 5 AB 8 TYR A 228 PRO A 231 -1 O ILE A 229 N ILE A 214 SHEET 6 AB 8 VAL A 236 GLY A 239 -1 O THR A 237 N ILE A 230 SHEET 7 AB 8 GLN A 196 ASP A 206 -1 O MET A 203 N LEU A 238 SHEET 8 AB 8 GLN A 243 LEU A 244 1 O GLN A 243 N ARG A 199 SHEET 1 AC 8 LEU A 112 LYS A 116 0 SHEET 2 AC 8 TYR A 130 LEU A 139 -1 O PHE A 133 N ARG A 115 SHEET 3 AC 8 LEU A 89 PHE A 98 -1 O PHE A 90 N ILE A 138 SHEET 4 AC 8 PHE A 213 THR A 216 1 O PHE A 213 N TYR A 95 SHEET 5 AC 8 TYR A 228 PRO A 231 -1 O ILE A 229 N ILE A 214 SHEET 6 AC 8 VAL A 236 GLY A 239 -1 O THR A 237 N ILE A 230 SHEET 7 AC 8 GLN A 196 ASP A 206 -1 O MET A 203 N LEU A 238 SHEET 8 AC 8 ARG A 274 VAL A 285 -1 O ARG A 274 N ASP A 206 SHEET 1 AD 2 GLN A 243 LEU A 244 0 SHEET 2 AD 2 GLN A 196 ASP A 206 1 O ARG A 199 N GLN A 243 SHEET 1 BA 6 LYS B 158 GLN B 161 0 SHEET 2 BA 6 ASP B 31 ALA B 36 1 O ILE B 32 N LYS B 158 SHEET 3 BA 6 ARG B 2 ILE B 6 1 O VAL B 3 N LYS B 33 SHEET 4 BA 6 VAL B 177 ASN B 180 1 O VAL B 177 N VAL B 4 SHEET 5 BA 6 GLU B 304 TYR B 309 1 O GLU B 304 N ILE B 178 SHEET 6 BA 6 ARG B 290 GLN B 295 -1 O ARG B 290 N TYR B 309 SHEET 1 BB 8 LEU B 112 LYS B 116 0 SHEET 2 BB 8 TYR B 130 LEU B 139 -1 O PHE B 133 N ARG B 115 SHEET 3 BB 8 LEU B 89 PHE B 98 -1 O PHE B 90 N ILE B 138 SHEET 4 BB 8 PHE B 213 THR B 216 1 O PHE B 213 N TYR B 95 SHEET 5 BB 8 TYR B 228 PRO B 231 -1 O ILE B 229 N ILE B 214 SHEET 6 BB 8 VAL B 236 GLY B 239 -1 O THR B 237 N ILE B 230 SHEET 7 BB 8 GLN B 196 ASP B 206 -1 O MET B 203 N LEU B 238 SHEET 8 BB 8 GLN B 243 LEU B 244 1 O GLN B 243 N ARG B 199 SHEET 1 BC 8 LEU B 112 LYS B 116 0 SHEET 2 BC 8 TYR B 130 LEU B 139 -1 O PHE B 133 N ARG B 115 SHEET 3 BC 8 LEU B 89 PHE B 98 -1 O PHE B 90 N ILE B 138 SHEET 4 BC 8 PHE B 213 THR B 216 1 O PHE B 213 N TYR B 95 SHEET 5 BC 8 TYR B 228 PRO B 231 -1 O ILE B 229 N ILE B 214 SHEET 6 BC 8 VAL B 236 GLY B 239 -1 O THR B 237 N ILE B 230 SHEET 7 BC 8 GLN B 196 ASP B 206 -1 O MET B 203 N LEU B 238 SHEET 8 BC 8 ARG B 274 VAL B 285 -1 O ARG B 274 N ASP B 206 SHEET 1 BD 2 GLN B 243 LEU B 244 0 SHEET 2 BD 2 GLN B 196 ASP B 206 1 O ARG B 199 N GLN B 243 CISPEP 1 THR A 40 PRO A 41 0 12.03 CISPEP 2 THR B 40 PRO B 41 0 8.90 SITE 1 AC1 38 GLY A 7 ALA A 8 GLY A 9 VAL A 10 SITE 2 AC1 38 ILE A 11 ALA A 36 ASP A 37 ARG A 38 SITE 3 AC1 38 THR A 43 THR A 44 THR A 45 ALA A 48 SITE 4 AC1 38 ALA A 49 GLY A 50 LEU A 51 ARG A 162 SITE 5 AC1 38 LYS A 163 VAL A 164 CYS A 181 THR A 182 SITE 6 AC1 38 GLY A 183 TRP A 185 ILE A 202 TYR A 228 SITE 7 AC1 38 ARG A 283 HIS A 311 GLY A 312 GLY A 313 SITE 8 AC1 38 TYR A 314 GLY A 315 LEU A 316 THR A 317 SITE 9 AC1 38 4WL A 360 GOL A1343 HOH A2011 HOH A2016 SITE 10 AC1 38 HOH A2048 HOH A2094 SITE 1 AC2 8 LEU A 51 TYR A 224 TYR A 228 ILE A 230 SITE 2 AC2 8 ARG A 283 GLY A 313 FAD A 350 GOL A1345 SITE 1 AC3 36 GLY B 7 ALA B 8 GLY B 9 VAL B 10 SITE 2 AC3 36 ILE B 11 ALA B 36 ASP B 37 ARG B 38 SITE 3 AC3 36 THR B 43 THR B 44 THR B 45 ALA B 48 SITE 4 AC3 36 ALA B 49 GLY B 50 LEU B 51 ARG B 162 SITE 5 AC3 36 VAL B 164 CYS B 181 THR B 182 GLY B 183 SITE 6 AC3 36 TRP B 185 ILE B 202 TYR B 228 ARG B 283 SITE 7 AC3 36 GLY B 312 GLY B 313 TYR B 314 GLY B 315 SITE 8 AC3 36 LEU B 316 THR B 317 4WL B 360 HOH B2029 SITE 9 AC3 36 HOH B2058 HOH B2060 HOH B2062 HOH B2078 SITE 1 AC4 8 LEU B 51 GLN B 53 TYR B 224 TYR B 228 SITE 2 AC4 8 ILE B 230 ARG B 283 GLY B 313 FAD B 350 SITE 1 AC5 3 LYS A 158 PHE A 159 PHE A 160 SITE 1 AC6 5 PRO B 193 LEU B 194 GLN B 196 PRO B 287 SITE 2 AC6 5 HOH B2145 SITE 1 AC7 7 PHE A 98 HIS A 99 GLU A 100 ILE A 102 SITE 2 AC7 7 HIS A 217 PRO A 219 HOH A2073 SITE 1 AC8 6 PRO A 300 GLY B 187 ARG B 191 ASP B 192 SITE 2 AC8 6 PRO B 193 LEU B 339 SITE 1 AC9 7 ASP A 37 ARG A 38 LYS A 163 TRP A 185 SITE 2 AC9 7 FAD A 350 GOL A1346 HOH A2085 SITE 1 BC1 8 THR A 45 ASP A 46 ALA A 48 ALA A 49 SITE 2 BC1 8 GLU A 140 GLY A 141 LYS A 142 LYS A 204 SITE 1 BC2 7 GLN A 53 PRO A 54 LEU A 56 HIS A 217 SITE 2 BC2 7 4WL A 360 HOH A2068 HOH A2123 SITE 1 BC3 5 TRP A 185 TRP A 247 GLU A 249 PHE A 282 SITE 2 BC3 5 GOL A1343 SITE 1 BC4 6 HIS B 99 ASP B 127 TYR B 128 GLY B 129 SITE 2 BC4 6 HOH B2031 HOH B2081 SITE 1 BC5 4 HIS A 80 ASP B 123 MET B 124 PRO B 126 SITE 1 BC6 2 GLU A 294 GLN A 295 CRYST1 44.830 78.680 99.960 90.00 92.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022306 0.000000 0.001107 0.00000 SCALE2 0.000000 0.012710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010016 0.00000