HEADER MEMBRANE PROTEIN 21-FEB-13 3ZOJ TITLE HIGH-RESOLUTION STRUCTURE OF PICHIA PASTORIS AQUAPORIN AQY1 AT 0.88 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AQUAPORIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AQUAPORIN PIP2-7 7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KOMAGATAELLA PASTORIS; SOURCE 3 ORGANISM_TAXID: 4922; SOURCE 4 STRAIN: X33; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPICZB KEYWDS CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.KOSINSKA-ERIKSSON,G.FISCHER,R.FRIEMANN,G.ENKAVI,E.TAJKHORSHID, AUTHOR 2 R.NEUTZE REVDAT 4 20-DEC-23 3ZOJ 1 HETSYN REVDAT 3 29-JUL-20 3ZOJ 1 COMPND REMARK HETNAM SITE REVDAT 3 2 1 ATOM REVDAT 2 03-JUL-13 3ZOJ 1 REMARK CONECT REVDAT 1 26-JUN-13 3ZOJ 0 JRNL AUTH U.KOSINSKA-ERIKSSON,G.FISCHER,R.FRIEMANN,G.ENKAVI, JRNL AUTH 2 E.TAJKHORSHID,R.NEUTZE JRNL TITL SUBANGSTROM RESOLUTION X-RAY STRUCTURE DETAILS JRNL TITL 2 AQUAPORIN-WATER INTERACTIONS JRNL REF SCIENCE V. 340 1346 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23766328 JRNL DOI 10.1126/SCIENCE.1234306 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.FISCHER,U.KOSINSKA-ERIKSSON,C.APONTE-SANTAMARIA, REMARK 1 AUTH 2 M.PALMGREN,C.GEIJER,K.HEDFALK,S.HOHMANN,B.L.DE GROOT, REMARK 1 AUTH 3 R.NEUTZE,K.LINDKVIST-PETERSSON REMARK 1 TITL CRYSTAL STRUCTURE OF A YEAST AQUAPORIN AT 1.15 ANGSTROM REMARK 1 TITL 2 REVEALS A NOVEL GATING MECHANISM. REMARK 1 REF PLOS BIOL. V. 7 130 2009 REMARK 1 REFN ISSN 1544-9173 REMARK 1 PMID 19529756 REMARK 1 DOI 10.1371/JOURNAL.PBIO.1000130 REMARK 2 REMARK 2 RESOLUTION. 0.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 249442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.103 REMARK 3 R VALUE (WORKING SET) : 0.103 REMARK 3 FREE R VALUE : 0.107 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2381 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 18437 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.009 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.009 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.006 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2243 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2150 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3073 ; 1.691 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4902 ; 0.872 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 4.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;35.080 ;21.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;11.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2560 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1105 ; 0.901 ; 0.866 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1104 ; 0.873 ; 0.864 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1398 ; 1.055 ; 1.303 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1138 ; 1.692 ; 1.121 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4393 ; 5.423 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 52 ;16.265 ; 0.500 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4475 ; 8.006 ; 0.500 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. POLAR HYDROGENS WERE SET TO OCCUPANCY 0 UNLESS THEY REMARK 3 WERE OBSERVED IN THE DIFFERENCE DENSITY. HYDROGEN ATOMS FOR REMARK 3 WATERS IN THE CHANNEL CAN BE OBSERVED THROUGH THE DIFFERENCE REMARK 3 DENSITY BUT HAVE NOT BEEN MODELLED. REMARK 4 REMARK 4 3ZOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 252057 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.880 REMARK 200 RESOLUTION RANGE LOW (A) : 64.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2W2E REMARK 200 REMARK 200 REMARK: 2 LOW-, 2 MEDIUM- AND 3 HIGH-RESOLUTION DATASETS WERE REMARK 200 COLLECTED FROM A SINGLE CRYSTAL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG600, 100 MM TRIS (PH=8.0), 200 REMARK 280 MM CACL2, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.38150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.38150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.15550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.38150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.38150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.15550 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.38150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 45.38150 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.15550 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 45.38150 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.38150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.15550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 90.76300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 90.76300 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 90.76300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 90.76300 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1277 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ASP A 10 REMARK 465 GLY A 274 REMARK 465 GLN A 275 REMARK 465 ASP A 276 REMARK 465 SER A 277 REMARK 465 ASP A 278 REMARK 465 ALA A 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 195 O HOH A 2177 1.57 REMARK 500 O HOH A 2039 O HOH A 2040 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 151 SD MET A 151 CE -0.487 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 MET A 142 CG - SD - CE ANGL. DEV. = -11.2 DEGREES REMARK 500 MET A 151 CG - SD - CE ANGL. DEV. = -18.3 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 112 116.68 -173.45 REMARK 500 ALA A 221 90.58 68.42 REMARK 500 ASN A 224 99.62 174.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 168 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 CHLORIDE ION (CL): ASSIGNED BASED ON DIFFERENCE DENSITY AND REMARK 600 CHEMICAL SANITY REMARK 600 B-OCTYLGLUCOSIDE (BOG): ONLY ASSIGNED WHEN HEADGROUP WAS REMARK 600 UNAMBIGUOUSLY VISIBLE IN THE DENSITY. DBREF 3ZOJ A 1 279 UNP F2QVG4 F2QVG4_PICP7 1 279 SEQRES 1 A 279 MET PRO ASP ILE GLU ASN GLN ALA ALA ASP GLY GLN ALA SEQRES 2 A 279 GLU ILE LYS PRO GLU ASP ALA PRO TYR ILE THR ASN ALA SEQRES 3 A 279 TYR LYS PRO ALA TYR ALA ARG TRP GLY PHE GLY SER ASP SEQRES 4 A 279 SER VAL ARG ASN HIS PHE ILE ALA MET SER GLY GLU PHE SEQRES 5 A 279 VAL GLY THR PHE LEU PHE LEU TRP SER ALA PHE VAL ILE SEQRES 6 A 279 ALA GLN ILE ALA ASN GLN ALA PRO GLU THR PRO ASP GLY SEQRES 7 A 279 GLY SER ASN PRO ALA GLN LEU ILE MET ILE SER PHE GLY SEQRES 8 A 279 PHE GLY PHE GLY VAL MET VAL GLY VAL PHE ILE THR TYR SEQRES 9 A 279 ARG VAL SER GLY GLY ASN LEU ASN PRO ALA VAL THR LEU SEQRES 10 A 279 ALA LEU VAL LEU ALA ARG ALA ILE PRO PRO PHE ARG GLY SEQRES 11 A 279 ILE LEU MET ALA PHE THR GLN ILE VAL ALA GLY MET ALA SEQRES 12 A 279 ALA ALA GLY ALA ALA SER ALA MET THR PRO GLY GLU ILE SEQRES 13 A 279 ALA PHE ALA ASN ALA LEU GLY GLY GLY ALA SER ARG THR SEQRES 14 A 279 ARG GLY LEU PHE LEU GLU ALA PHE GLY THR ALA ILE LEU SEQRES 15 A 279 CYS LEU THR VAL LEU MET LEU ALA VAL GLU LYS HIS ARG SEQRES 16 A 279 ALA THR TRP PHE ALA PRO PHE VAL ILE GLY ILE ALA LEU SEQRES 17 A 279 LEU ILE ALA HIS LEU ILE CYS ILE TYR TYR THR GLY ALA SEQRES 18 A 279 GLY LEU ASN PRO ALA ARG SER PHE GLY PRO ALA VAL ALA SEQRES 19 A 279 ALA ARG SER PHE PRO ASN TYR HIS TRP ILE TYR TRP LEU SEQRES 20 A 279 GLY PRO ILE LEU GLY ALA PHE LEU ALA TYR SER ILE TRP SEQRES 21 A 279 GLN MET TRP LYS TRP LEU ASN TYR GLN THR THR ASN PRO SEQRES 22 A 279 GLY GLN ASP SER ASP ALA HET BOG A1274 48 HET BOG A1275 48 HET BOG A1276 48 HET CL A1277 1 HET CL A1278 1 HET CL A1279 1 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM CL CHLORIDE ION HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 2 BOG 3(C14 H28 O6) FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *212(H2 O) HELIX 1 1 LYS A 16 ASP A 19 5 4 HELIX 2 2 ALA A 20 ASN A 25 1 6 HELIX 3 3 PRO A 29 TRP A 34 5 6 HELIX 4 4 SER A 40 ASN A 70 1 31 HELIX 5 5 THR A 75 GLY A 79 5 5 HELIX 6 6 ASN A 81 TYR A 104 1 24 HELIX 7 7 ASN A 112 ALA A 122 1 11 HELIX 8 8 PRO A 126 THR A 152 1 27 HELIX 9 9 SER A 167 ALA A 190 1 24 HELIX 10 10 ALA A 196 TRP A 198 5 3 HELIX 11 11 PHE A 199 GLY A 220 1 22 HELIX 12 12 ASN A 224 ARG A 236 1 13 HELIX 13 13 PRO A 239 HIS A 242 5 4 HELIX 14 14 TRP A 243 LEU A 266 1 24 CRYST1 90.763 90.763 80.311 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012452 0.00000