HEADER VIRAL PROTEIN 26-FEB-13 3ZP1 TITLE INFLUENZA VIRUS (VN1194) H5 HA WITH LSTC CAVEAT 3ZP1 SIA A 2 HAS WRONG CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAEMAGGLUTININ; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: HA1 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-342; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HAEMAGGLUTININ; COMPND 8 CHAIN: F; COMPND 9 FRAGMENT: HA2 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 347-512; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: VIETNAM/1194/2004 (H5N1); SOURCE 5 VARIANT: VN/1194/04/NIBRG14 VACCINE STRAIN; SOURCE 6 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHICKEN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9031; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: EGG; SOURCE 10 OTHER_DETAILS: THE NATIONAL INSTITUTE FOR BIOLOGICAL STANDARDS AND SOURCE 11 CONTROL (NIBSC); SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 14 ORGANISM_TAXID: 11320; SOURCE 15 STRAIN: VIETNAM/1194/2004 (H5N1); SOURCE 16 VARIANT: VN/1194/04/NIBRG14 VACCINE STRAIN; SOURCE 17 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CHICKEN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9031; SOURCE 20 EXPRESSION_SYSTEM_ORGAN: EGG; SOURCE 21 OTHER_DETAILS: THE NATIONAL INSTITUTE FOR BIOLOGICAL STANDARDS AND SOURCE 22 CONTROL (NIBSC) KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,D.J.STEVENS,S.J.GAMBLIN,J.J.SKEHEL REVDAT 4 06-NOV-24 3ZP1 1 REMARK HETSYN REVDAT 3 29-JUL-20 3ZP1 1 CAVEAT COMPND JRNL REMARK REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 20-NOV-13 3ZP1 1 JRNL REVDAT 1 02-OCT-13 3ZP1 0 JRNL AUTH M.CRUSAT,J.LIU,A.S.PALMA,R.A.CHILDS,Y.LIU,S.A.WHARTON, JRNL AUTH 2 Y.P.LIN,P.J.COOMBS,S.R.MARTIN,M.MATROSOVICH,Z.CHEN, JRNL AUTH 3 D.J.STEVENS,V.M.HIEN,T.T.THANH,L.N.T.NHU,L.A.NGUYET,D.Q.HA, JRNL AUTH 4 H.R.VAN DOORN,T.T.HIEN,H.S.CONRADT,M.KISO,S.J.GAMBLIN, JRNL AUTH 5 W.CHAI,J.J.SKEHEL,A.J.HAY,J.FARRAR,M.D.DE JONG,T.FEIZI JRNL TITL CHANGES IN THE HEMAGGLUTININ OF H5N1 VIRUSES DURING HUMAN JRNL TITL 2 INFECTION - INFLUENCE ON RECEPTOR BINDING. JRNL REF VIROLOGY V. 447 326 2013 JRNL REFN ISSN 0042-6822 JRNL PMID 24050651 JRNL DOI 10.1016/J.VIROL.2013.08.010 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 23730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.473 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.238 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.938 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4055 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5496 ; 1.357 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 6.773 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;41.377 ;25.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;18.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3073 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2388 ; 0.591 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3857 ; 1.156 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1667 ; 1.508 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1639 ; 2.593 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 5 E 325 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2630 -17.5510 -3.1150 REMARK 3 T TENSOR REMARK 3 T11: 0.0426 T22: 0.2555 REMARK 3 T33: 0.1013 T12: -0.0086 REMARK 3 T13: 0.0419 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 0.0541 L22: 0.2713 REMARK 3 L33: 2.1726 L12: 0.0257 REMARK 3 L13: -0.1369 L23: 0.2109 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.0425 S13: 0.0550 REMARK 3 S21: 0.0777 S22: -0.1305 S23: 0.0622 REMARK 3 S31: -0.0667 S32: -0.3715 S33: 0.1011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 160 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5010 -22.6770 -53.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.0837 REMARK 3 T33: 0.1672 T12: 0.0241 REMARK 3 T13: -0.0181 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.4531 L22: 0.2523 REMARK 3 L33: 4.5973 L12: -0.2986 REMARK 3 L13: 0.9164 L23: -0.8885 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.0325 S13: 0.0035 REMARK 3 S21: -0.0226 S22: -0.0412 S23: 0.0336 REMARK 3 S31: 0.0643 S32: -0.1294 S33: 0.0307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9715 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.54500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.18217 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 149.48667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.54500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.18217 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 149.48667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.54500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.18217 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 149.48667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.54500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.18217 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 149.48667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.54500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.18217 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 149.48667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.54500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.18217 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 149.48667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.36434 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 298.97333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.36434 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 298.97333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.36434 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 298.97333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.36434 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 298.97333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.36434 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 298.97333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.36434 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 298.97333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.54500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -87.54651 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 101.09000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN E 326 REMARK 465 ARG E 327 REMARK 465 GLU E 328 REMARK 465 ARG E 329 REMARK 465 ARG E 330 REMARK 465 TYR F 159 REMARK 465 PRO F 160 REMARK 465 GLN F 161 REMARK 465 TYR F 162 REMARK 465 SER F 163 REMARK 465 GLU F 164 REMARK 465 GLU F 165 REMARK 465 ALA F 166 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS E 262 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN E 113 CA GLY E 264 1.67 REMARK 500 O SER E 159 OE1 GLN E 196 2.12 REMARK 500 O SER E 125 NH2 ARG E 166 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG E 57 -123.08 61.94 REMARK 500 SER E 124 48.99 -84.75 REMARK 500 CYS E 139 72.15 -116.03 REMARK 500 PHE E 148 123.12 -39.70 REMARK 500 SER E 159 43.14 76.42 REMARK 500 GLN E 196 -59.95 73.57 REMARK 500 VAL E 261 -68.81 -104.74 REMARK 500 CYS E 282 114.10 -168.21 REMARK 500 GLN F 62 142.65 -173.02 REMARK 500 ARG F 127 -130.19 59.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS F 142 LYS F 143 143.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E2047 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH E2082 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH E2083 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH E2084 DISTANCE = 9.50 ANGSTROMS REMARK 525 HOH F2056 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH F2057 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH F2060 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH F2061 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH F2062 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH F2063 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH F2064 DISTANCE = 5.83 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GAL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZP0 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 HA WITH LSTA REMARK 900 RELATED ID: 3ZP2 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 HA A138V MUTANT WITH LSTA REMARK 900 RELATED ID: 3ZP3 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 HA A138V MUTANT WITH LSTC REMARK 900 RELATED ID: 3ZP6 RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 E190D MUTANT HA WITH LSTC REMARK 900 RELATED ID: 3ZPA RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 I155F MUTANT HA REMARK 900 RELATED ID: 3ZPB RELATED DB: PDB REMARK 900 INFLUENZA VIRUS (VN1194) H5 E190D MUTANT HA WITH LSTA DBREF 3ZP1 E 5 330 UNP Q6DQ34 Q6DQ34_9INFA 17 342 DBREF 3ZP1 F 1 166 UNP Q6DQ34 Q6DQ34_9INFA 347 512 SEQADV 3ZP1 LYS E 40 UNP Q6DQ34 THR 52 CONFLICT SEQRES 1 E 326 ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 E 326 GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR VAL SEQRES 3 E 326 THR HIS ALA GLN ASP ILE LEU GLU LYS LYS HIS ASN GLY SEQRES 4 E 326 LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE LEU SEQRES 5 E 326 ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 E 326 MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER TYR SEQRES 7 E 326 ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP LEU CYS TYR SEQRES 8 E 326 PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS HIS LEU SEQRES 9 E 326 LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE ILE SEQRES 10 E 326 PRO LYS SER SER TRP SER SER HIS GLU ALA SER LEU GLY SEQRES 11 E 326 VAL SER SER ALA CYS PRO TYR GLN GLY LYS SER SER PHE SEQRES 12 E 326 PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN SER THR SEQRES 13 E 326 TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN GLN SEQRES 14 E 326 GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO ASN SEQRES 15 E 326 ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN PRO THR SEQRES 16 E 326 THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN ARG SEQRES 17 E 326 LEU VAL PRO ARG ILE ALA THR ARG SER LYS VAL ASN GLY SEQRES 18 E 326 GLN SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU LYS SEQRES 19 E 326 PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN PHE SEQRES 20 E 326 ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS GLY SEQRES 21 E 326 ASP SER THR ILE MET LYS SER GLU LEU GLU TYR GLY ASN SEQRES 22 E 326 CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE ASN SEQRES 23 E 326 SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR ILE SEQRES 24 E 326 GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU VAL SEQRES 25 E 326 LEU ALA THR GLY LEU ARG ASN SER PRO GLN ARG GLU ARG SEQRES 26 E 326 ARG SEQRES 1 F 166 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 F 166 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 F 166 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 F 166 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 F 166 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 F 166 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 F 166 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 F 166 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 F 166 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 F 166 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 F 166 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 F 166 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 F 166 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA HET GAL A 1 3 HET SIA A 2 20 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 4 HOH *146(H2 O) HELIX 1 1 SER E 60 GLY E 67 1 8 HELIX 2 2 ASN E 68 ILE E 75 5 8 HELIX 3 3 ASP E 101 SER E 110 1 10 HELIX 4 4 PRO E 122 TRP E 126 5 5 HELIX 5 5 ASP E 187 GLN E 196 1 10 HELIX 6 6 ASP F 37 MET F 59 1 23 HELIX 7 7 GLU F 74 ARG F 127 1 54 HELIX 8 8 ASP F 145 GLY F 155 1 11 SHEET 1 FA 5 GLY F 31 ALA F 36 0 SHEET 2 FA 5 TYR F 22 ASN F 28 -1 O TYR F 24 N ALA F 35 SHEET 3 FA 5 GLN E 6 TYR E 11 -1 O GLN E 6 N SER F 27 SHEET 4 FA 5 CYS F 137 PHE F 140 -1 O PHE F 138 N ILE E 7 SHEET 5 FA 5 ALA F 130 GLU F 132 -1 O LYS F 131 N GLU F 139 SHEET 1 EA 2 GLN E 19 VAL E 20 0 SHEET 2 EA 2 VAL E 28 THR E 29 -1 O VAL E 28 N VAL E 20 SHEET 1 EB 2 ALA E 33 ASP E 35 0 SHEET 2 EB 2 VAL E 316 ALA E 318 -1 O LEU E 317 N GLN E 34 SHEET 1 EC 3 LEU E 37 GLU E 38 0 SHEET 2 EC 3 PHE E 295 HIS E 296 1 O PHE E 295 N GLU E 38 SHEET 3 EC 3 LYS E 308 TYR E 309 1 O LYS E 308 N HIS E 296 SHEET 1 ED 2 LEU E 45 LEU E 48 0 SHEET 2 ED 2 TYR E 275 THR E 280 1 N GLY E 276 O LEU E 45 SHEET 1 EE 3 LEU E 54 ILE E 55 0 SHEET 2 EE 3 ILE E 83 GLU E 85 1 N VAL E 84 O LEU E 54 SHEET 3 EE 3 ILE E 268 LYS E 270 1 O MET E 269 N GLU E 85 SHEET 1 EF 5 GLY E 97 PHE E 99 0 SHEET 2 EF 5 ARG E 229 LEU E 237 1 O MET E 230 N ASP E 98 SHEET 3 EF 5 LEU E 176 HIS E 184 -1 O LEU E 176 N LEU E 237 SHEET 4 EF 5 PHE E 251 PRO E 254 -1 O ILE E 252 N GLY E 181 SHEET 5 EF 5 VAL E 151 TRP E 153 -1 O VAL E 152 N ALA E 253 SHEET 1 EG 5 GLY E 97 PHE E 99 0 SHEET 2 EG 5 ARG E 229 LEU E 237 1 O MET E 230 N ASP E 98 SHEET 3 EG 5 LEU E 176 HIS E 184 -1 O LEU E 176 N LEU E 237 SHEET 4 EG 5 TYR E 256 ILE E 260 -1 O TYR E 258 N LEU E 177 SHEET 5 EG 5 PHE E 115 GLN E 119 -1 O GLU E 116 N LYS E 259 SHEET 1 EH 2 SER E 136 TYR E 141 0 SHEET 2 EH 2 LYS E 144 SER E 146 -1 O LYS E 144 N TYR E 141 SHEET 1 EI 4 ILE E 164 ASN E 169 0 SHEET 2 EI 4 ALA E 242 SER E 247 -1 O ILE E 243 N TYR E 168 SHEET 3 EI 4 ILE E 202 GLY E 205 -1 O SER E 203 N GLU E 246 SHEET 4 EI 4 ASN E 210 LEU E 213 -1 O GLN E 211 N VAL E 204 SHEET 1 EJ 3 GLY E 287 ALA E 288 0 SHEET 2 EJ 3 CYS E 282 THR E 284 -1 O THR E 284 N GLY E 287 SHEET 3 EJ 3 ILE E 303 GLY E 304 -1 O ILE E 303 N GLN E 283 SSBOND 1 CYS E 8 CYS F 137 1555 1555 2.10 SSBOND 2 CYS E 46 CYS E 278 1555 1555 2.07 SSBOND 3 CYS E 59 CYS E 71 1555 1555 2.07 SSBOND 4 CYS E 94 CYS E 139 1555 1555 2.09 SSBOND 5 CYS E 282 CYS E 306 1555 1555 2.07 SSBOND 6 CYS F 144 CYS F 148 1555 1555 1.63 LINK O2 GAL A 1 C2 SIA A 2 1555 1555 1.46 CRYST1 101.090 101.090 448.460 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009892 0.005711 0.000000 0.00000 SCALE2 0.000000 0.011423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002230 0.00000