HEADER CELL ADHESION 28-FEB-13 3ZPP TITLE STRUCTURE OF THE STREPTOCOCCUS PNEUMONIAE SURFACE PROTEIN TITLE 2 AND ADHESIN PFBA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL WALL SURFACE ANCHOR FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORE-DOMAIN, RESIDUES 139-560; COMPND 5 SYNONYM: SP_1833; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CELL ADHESION, PFBA, SURFACE ADHESIN, SP1833, MSCRAMM EXPDTA X-RAY DIFFRACTION AUTHOR M.D.L SUITS,A.B.BORASTON REVDAT 2 14-AUG-13 3ZPP 1 JRNL REVDAT 1 29-MAY-13 3ZPP 0 JRNL AUTH M.D.SUITS,A.B.BORASTON JRNL TITL STRUCTURE OF THE STREPTOCOCCUS PNEUMONIAE SURFACE PROTEIN JRNL TITL 2 AND ADHESIN PFBA. JRNL REF PLOS ONE V. 8 67190 2013 JRNL REFN ISSN 1932-6203 JRNL PMID 23894284 JRNL DOI 10.1371/JOURNAL.PONE.0067190 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.97 REMARK 3 NUMBER OF REFLECTIONS : 25097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21045 REMARK 3 R VALUE (WORKING SET) : 0.20804 REMARK 3 FREE R VALUE : 0.25510 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.280 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.339 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.306 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.349 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.156 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.26 REMARK 3 B22 (A**2) : 1.04 REMARK 3 B33 (A**2) : -6.29 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.256 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3311 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4481 ; 1.666 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 8.790 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;43.603 ;26.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 587 ;18.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2501 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. REMARK 3 U VALUES REFINED INDIVIDUALLY REMARK 3 N-TERMINAL IMAC AFFINITY TAG IS PRESENT IN THE CONSTRUCT REMARK 3 BUT NOT MODELED INTO THE COORDINATES DUE TO THE ABSENCE OF REMARK 3 CLEAR ELECTRON DENSITY FOR THIS REGION. REMARK 4 REMARK 4 3ZPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-13. REMARK 100 THE PDBE ID CODE IS EBI-56007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : VERTICAL COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX-225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.28 REMARK 200 RESOLUTION RANGE LOW (A) : 38.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.5 REMARK 200 R MERGE (I) : 0.13 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.5 REMARK 200 R MERGE FOR SHELL (I) : 0.50 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STRUCTURE WAS SOLVED VIA MR FROM A SAD REMARK 200 SELENOMETHIONINE DERIVATIVE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) 10K POLYETHYLENE GLYCOL, REMARK 280 80 MM MG DIFORMATE (C2H2MGO4) AND BIS-TRIS-HCL (PH 5.5) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.32000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.32000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.42000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.42000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.32000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.42000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.32500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.32000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.42000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.32500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 SER A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 SER A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 LEU A 131 REMARK 465 VAL A 132 REMARK 465 PRO A 133 REMARK 465 ARG A 134 REMARK 465 GLY A 135 REMARK 465 SER A 136 REMARK 465 HIS A 137 REMARK 465 MET A 138 REMARK 465 SER A 560 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 559 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA CA A 601 O HOH A 2011 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 449 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 155 107.98 -58.04 REMARK 500 SER A 216 66.11 -118.13 REMARK 500 THR A 225 -64.29 -125.80 REMARK 500 ASP A 238 68.00 60.67 REMARK 500 ASN A 278 76.09 61.51 REMARK 500 ASP A 288 63.33 61.29 REMARK 500 GLN A 291 56.26 35.68 REMARK 500 LYS A 327 65.27 -105.68 REMARK 500 PRO A 341 13.69 -67.03 REMARK 500 ASN A 388 71.79 51.24 REMARK 500 ASN A 398 41.81 72.32 REMARK 500 ASP A 411 72.20 70.91 REMARK 500 LYS A 444 89.17 -68.20 REMARK 500 ASP A 488 70.50 51.98 REMARK 500 ASN A 516 83.42 51.82 REMARK 500 LYS A 528 -102.95 -74.45 REMARK 500 ASN A 549 14.80 59.94 REMARK 500 TYR A 554 -78.23 -58.26 REMARK 500 SER A 556 106.37 -162.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 152 ILE A 153 -136.87 REMARK 500 ALA A 476 LYS A 477 139.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 187 OE2 REMARK 620 2 HIS A 214 NE2 87.0 REMARK 620 3 HOH A2009 O 97.7 97.4 REMARK 620 4 HOH A2010 O 84.7 87.0 175.1 REMARK 620 5 THR A 225 O 169.1 88.5 92.7 85.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS A TRUNCATED FORM OF THE PROTEIN SPANNING RESIDUES REMARK 999 139-560. DBREF 3ZPP A 139 560 UNP Q97P11 Q97P11_STRPN 139 560 SEQADV 3ZPP MET A 118 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP GLY A 119 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP SER A 120 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP SER A 121 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP HIS A 122 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP HIS A 123 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP HIS A 124 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP HIS A 125 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP HIS A 126 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP HIS A 127 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP SER A 128 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP SER A 129 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP GLY A 130 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP LEU A 131 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP VAL A 132 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP PRO A 133 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP ARG A 134 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP GLY A 135 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP SER A 136 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP HIS A 137 UNP Q97P11 EXPRESSION TAG SEQADV 3ZPP MET A 138 UNP Q97P11 EXPRESSION TAG SEQRES 1 A 443 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 443 LEU VAL PRO ARG GLY SER HIS MET THR ALA LEU SER VAL SEQRES 3 A 443 LYS ASP TYR GLY ALA VAL GLY ASP GLY ILE HIS ASP ASP SEQRES 4 A 443 ARG GLN ALA ILE GLN ASP ALA ILE ASP ALA ALA ALA GLN SEQRES 5 A 443 GLY LEU GLY GLY GLY ASN VAL TYR PHE PRO GLU GLY THR SEQRES 6 A 443 TYR LEU VAL LYS GLU ILE VAL PHE LEU LYS SER HIS THR SEQRES 7 A 443 HIS LEU GLU LEU ASN GLU LYS ALA THR ILE LEU ASN GLY SEQRES 8 A 443 ILE ASN ILE LYS ASN HIS PRO SER ILE VAL PHE MET THR SEQRES 9 A 443 GLY LEU PHE THR ASP ASP GLY ALA GLN VAL GLU TRP GLY SEQRES 10 A 443 PRO THR GLU ASP ILE SER TYR SER GLY GLY THR ILE ASP SEQRES 11 A 443 MET ASN GLY ALA LEU ASN GLU GLU GLY THR LYS ALA LYS SEQRES 12 A 443 ASN LEU PRO LEU ILE ASN SER SER GLY ALA PHE ALA ILE SEQRES 13 A 443 GLY ASN SER ASN ASN VAL THR ILE LYS ASN VAL THR PHE SEQRES 14 A 443 LYS ASP SER TYR GLN GLY HIS ALA ILE GLN ILE ALA GLY SEQRES 15 A 443 SER LYS ASN VAL LEU VAL ASP ASN SER ARG PHE LEU GLY SEQRES 16 A 443 GLN ALA LEU PRO LYS THR MET LYS ASP GLY GLN ILE ILE SEQRES 17 A 443 SER LYS GLU SER ILE GLN ILE GLU PRO LEU THR ARG LYS SEQRES 18 A 443 GLY PHE PRO TYR ALA LEU ASN ASP ASP GLY LYS LYS SER SEQRES 19 A 443 GLU ASN VAL THR ILE GLN ASN SER TYR PHE GLY LYS SER SEQRES 20 A 443 ASP LYS SER GLY GLU LEU VAL THR ALA ILE GLY THR HIS SEQRES 21 A 443 TYR GLN THR LEU SER THR GLN ASN PRO SER ASN ILE LYS SEQRES 22 A 443 ILE GLN ASN ASN HIS PHE ASP ASN MET MET TYR ALA GLY SEQRES 23 A 443 VAL ARG PHE THR GLY PHE THR ASP VAL LEU ILE LYS GLY SEQRES 24 A 443 ASN ARG PHE ASP LYS LYS VAL LYS GLY GLU SER VAL HIS SEQRES 25 A 443 TYR ARG GLU SER GLY ALA ALA LEU VAL ASN ALA TYR SER SEQRES 26 A 443 TYR LYS ASN THR LYS ASP LEU LEU ASP LEU ASN LYS GLN SEQRES 27 A 443 VAL VAL ILE ALA GLU ASN ILE PHE ASN ILE ALA ASP PRO SEQRES 28 A 443 LYS THR LYS ALA ILE ARG VAL ALA LYS ASP SER ALA GLU SEQRES 29 A 443 TYR LEU GLY LYS VAL SER ASP ILE THR VAL THR LYS ASN SEQRES 30 A 443 VAL ILE ASN ASN ASN SER LYS GLU THR GLU GLN PRO ASN SEQRES 31 A 443 ILE GLU LEU LEU ARG VAL SER ASP ASN LEU VAL VAL SER SEQRES 32 A 443 GLU ASN SER ILE PHE GLY GLY LYS GLU GLY ILE VAL ILE SEQRES 33 A 443 GLU ASP SER LYS GLY LYS ILE THR VAL LEU ASN ASN GLN SEQRES 34 A 443 PHE TYR ASN LEU SER GLY LYS TYR ILE SER PHE ILE LYS SEQRES 35 A 443 SER HET CA A 601 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *59(H2 O) HELIX 1 1 ASP A 156 GLY A 170 1 15 HELIX 2 2 LEU A 171 GLY A 173 5 3 HELIX 3 3 LYS A 320 ILE A 325 1 6 HELIX 4 4 VAL A 423 SER A 427 5 5 SHEET 1 AA13 LEU A 141 SER A 142 0 SHEET 2 AA13 ASN A 175 PHE A 178 1 O ASN A 175 N LEU A 141 SHEET 3 AA13 THR A 195 LEU A 199 1 O HIS A 196 N VAL A 176 SHEET 4 AA13 THR A 236 SER A 242 1 O SER A 240 N LEU A 197 SHEET 5 AA13 SER A 276 LYS A 282 1 O ASN A 277 N ASP A 238 SHEET 6 AA13 LYS A 301 ASP A 306 1 O LYS A 301 N ASN A 278 SHEET 7 AA13 GLU A 352 GLN A 357 1 O GLU A 352 N ASN A 302 SHEET 8 AA13 SER A 387 GLN A 392 1 O SER A 387 N ASN A 353 SHEET 9 AA13 THR A 410 LYS A 415 1 O THR A 410 N ASN A 388 SHEET 10 AA13 LYS A 454 ALA A 459 1 O LYS A 454 N ASP A 411 SHEET 11 AA13 SER A 487 THR A 492 1 O SER A 487 N GLN A 455 SHEET 12 AA13 LEU A 517 SER A 520 1 O VAL A 518 N VAL A 491 SHEET 13 AA13 ILE A 540 LEU A 543 1 O THR A 541 N VAL A 519 SHEET 1 AB12 GLY A 181 VAL A 185 0 SHEET 2 AB12 ALA A 203 ASN A 207 1 O THR A 204 N TYR A 183 SHEET 3 AB12 THR A 245 ASP A 247 1 O THR A 245 N ILE A 205 SHEET 4 AB12 THR A 285 TYR A 290 1 O THR A 285 N ILE A 246 SHEET 5 AB12 ARG A 309 ALA A 314 1 O ARG A 309 N PHE A 286 SHEET 6 AB12 TYR A 360 GLY A 362 1 O TYR A 360 N PHE A 310 SHEET 7 AB12 HIS A 395 ASP A 397 1 O HIS A 395 N PHE A 361 SHEET 8 AB12 ARG A 418 LYS A 421 1 O ARG A 418 N PHE A 396 SHEET 9 AB12 ILE A 462 ILE A 465 1 O ILE A 462 N PHE A 419 SHEET 10 AB12 VAL A 495 ASN A 498 1 O VAL A 495 N PHE A 463 SHEET 11 AB12 SER A 523 PHE A 525 1 O SER A 523 N ILE A 496 SHEET 12 AB12 GLN A 546 TYR A 548 1 O GLN A 546 N ILE A 524 SHEET 1 AC12 VAL A 189 PHE A 190 0 SHEET 2 AC12 SER A 216 MET A 220 1 O VAL A 218 N VAL A 189 SHEET 3 AC12 SER A 268 GLY A 274 1 O GLY A 269 N VAL A 218 SHEET 4 AC12 ILE A 295 ALA A 298 1 O GLN A 296 N ILE A 273 SHEET 5 AC12 GLU A 328 GLU A 333 1 O SER A 329 N ILE A 295 SHEET 6 AC12 THR A 372 GLY A 375 1 O THR A 372 N SER A 329 SHEET 7 AC12 ALA A 402 PHE A 406 1 O ALA A 402 N ALA A 373 SHEET 8 AC12 ALA A 435 ALA A 440 1 O LEU A 437 N GLY A 403 SHEET 9 AC12 THR A 470 ALA A 476 1 O LYS A 471 N LEU A 437 SHEET 10 AC12 ILE A 508 LEU A 511 1 O GLU A 509 N VAL A 475 SHEET 11 AC12 ILE A 531 GLU A 534 1 O VAL A 532 N LEU A 510 SHEET 12 AC12 PHE A 557 ILE A 558 1 N ILE A 558 O ILE A 533 LINK CA CA A 601 OE2 GLU A 187 1555 1555 2.20 LINK CA CA A 601 NE2 HIS A 214 1555 1555 2.28 LINK CA CA A 601 O HOH A2009 1555 1555 2.36 LINK CA CA A 601 O HOH A2010 1555 1555 2.27 LINK CA CA A 601 O THR A 225 1555 1555 2.10 SITE 1 AC1 6 GLU A 187 HIS A 214 THR A 225 HOH A2009 SITE 2 AC1 6 HOH A2010 HOH A2011 CRYST1 62.840 140.650 128.640 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015913 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007774 0.00000