HEADER CELL INVASION 09-JUN-11 3ZQE TITLE PRGI-SIPD FROM SALMONELLA TYPHIMURIUM IN COMPLEX WITH DEOXYCHOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PRGI, CELL INVASION PROTEIN SIPD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PRGI FUSED WITH SIPD RESIDUES 127-343; COMPND 5 SYNONYM: SALMONELLA INVASION PROTEIN D, PRGI-SIPD FUSION PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: GGSGG LINK INSERTED BETWEEN PRGI AND SIPD SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 216597; SOURCE 5 STRAIN: SL1344; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS CELL INVASION, CELL INVASION COMPLEX, TYPE III SECRETION, T3SS, TIP KEYWDS 2 COMPLEX, HOST PATHOGEN INTERACTION, BACTERIAL PATHOGENESIS, BILE KEYWDS 3 SALT EXPDTA X-RAY DIFFRACTION AUTHOR M.LUNELLI,M.KOLBE REVDAT 3 20-DEC-23 3ZQE 1 REMARK REVDAT 2 28-MAR-12 3ZQE 1 JRNL HETSYN REVDAT 1 17-AUG-11 3ZQE 0 JRNL AUTH M.LUNELLI,R.HURWITZ,J.LAMBERS,M.KOLBE JRNL TITL CRYSTAL STRUCTURE OF PRGI-SIPD: INSIGHT INTO A SECRETION JRNL TITL 2 COMPETENT STATE OF THE TYPE THREE SECRETION SYSTEM NEEDLE JRNL TITL 3 TIP AND ITS INTERACTION WITH HOST LIGANDS JRNL REF PLOS PATHOG. V. 7 02163 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 21829362 JRNL DOI 10.1371/JOURNAL.PPAT.1002163 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3170360.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 34906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1728 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4838 REMARK 3 BIN R VALUE (WORKING SET) : 0.4670 REMARK 3 BIN FREE R VALUE : 0.4970 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 248 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.88000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : 9.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.100 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.260 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.880 ; 6.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 68.44 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GOL_FULL.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : DXC.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : GOL_FULL.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : DXC.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED. THE CHAINS REMARK 3 WERE RENUMBERED TO BE CONSISTENT WITH NUMBERING OF THE REMARK 3 BIOLOGICALLY ACTIVE MOLECULES FOR WHICH THERE ARE EXISTING PDB REMARK 3 AND UNIPROT ENTRIES. REMARK 4 REMARK 4 3ZQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3ZQB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS MIXED WITH SOLUTION REMARK 280 CONTAINING 0.026 M NAH2PO4 AND 1.26 M K2HPO4. OBTAINED CRYSTALS REMARK 280 WERE SOAKED FOR 72 HOURS IN SAME SOLUTION CONTAINING 0.01 M REMARK 280 DEOXYCHOLATE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.57600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.72800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.57600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.72800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 TRP A 5 REMARK 465 PHE A 79 REMARK 465 ARG A 80 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 THR A 127 REMARK 465 THR A 128 REMARK 465 LEU A 179 REMARK 465 PRO A 180 REMARK 465 GLY A 181 REMARK 465 LYS A 182 REMARK 465 ASP A 183 REMARK 465 GLY A 184 REMARK 465 ASN A 185 REMARK 465 ALA A 337 REMARK 465 LYS A 338 REMARK 465 SER A 339 REMARK 465 PHE A 340 REMARK 465 LEU A 341 REMARK 465 GLN A 342 REMARK 465 GLY A 343 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 PRO B 4 REMARK 465 TRP B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 TYR B 8 REMARK 465 LEU B 9 REMARK 465 ASP B 10 REMARK 465 VAL B 65 REMARK 465 LYS B 66 REMARK 465 VAL B 67 REMARK 465 PHE B 68 REMARK 465 LYS B 69 REMARK 465 ASP B 70 REMARK 465 ILE B 71 REMARK 465 ASP B 72 REMARK 465 ALA B 73 REMARK 465 ALA B 74 REMARK 465 ILE B 75 REMARK 465 ILE B 76 REMARK 465 GLN B 77 REMARK 465 ASN B 78 REMARK 465 PHE B 79 REMARK 465 ARG B 80 REMARK 465 GLY B 122 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 THR B 127 REMARK 465 THR B 128 REMARK 465 ILE B 129 REMARK 465 SER B 130 REMARK 465 ASP B 131 REMARK 465 ALA B 132 REMARK 465 GLU B 133 REMARK 465 ILE B 134 REMARK 465 TRP B 135 REMARK 465 ASP B 136 REMARK 465 MET B 137 REMARK 465 VAL B 138 REMARK 465 SER B 139 REMARK 465 GLN B 140 REMARK 465 ASN B 141 REMARK 465 ILE B 142 REMARK 465 SER B 143 REMARK 465 ALA B 144 REMARK 465 ILE B 145 REMARK 465 GLN B 342 REMARK 465 GLY B 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 78 CA C O CB CG OD1 ND2 REMARK 470 THR A 336 CA C O CB OG1 CG2 REMARK 470 THR B 64 CA C O CB OG1 CG2 REMARK 470 LEU B 341 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 38 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 38 -33.11 -37.92 REMARK 500 ILE A 76 52.45 -67.03 REMARK 500 GLN A 77 42.80 -175.57 REMARK 500 SER A 130 151.99 -44.63 REMARK 500 TYR A 149 -78.27 -128.78 REMARK 500 LEU A 334 35.42 -95.70 REMARK 500 GLU A 335 -80.41 -167.65 REMARK 500 ASP B 147 -37.44 -25.24 REMARK 500 SER B 210 49.83 -72.32 REMARK 500 ASN B 211 -6.08 -161.65 REMARK 500 ASP B 283 -174.30 -68.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID REMARK 600 (DXC): HETSYN DXC DEOXYCHOLIC ACID REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXC B 1079 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YM9 RELATED DB: PDB REMARK 900 SIPD FROM SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 2YM0 RELATED DB: PDB REMARK 900 TRUNCATED SIPD FROM SALMONELLA TYPHIMURIUM REMARK 900 RELATED ID: 2X9C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SOLUBLE PRGI MUTANT FROM SALMONELLA REMARK 900 TYPHIMURIUM REMARK 900 RELATED ID: 3ZQB RELATED DB: PDB REMARK 900 PRGI-SIPD FROM SALMONELLA TYPHIMURIUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES GSH AT THE N-TERMINUS REMAINING AFTER HIS-TAG CLEAVAGE. REMARK 999 GGSGG LINKER INSERTED BETWEEN PRGI AND SIPD127-343. DBREF 3ZQE A 1 80 UNP P41784 PRGI_SALTY 1 80 DBREF 3ZQE A 122 126 PDB 3ZQE 3ZQE 122 126 DBREF 3ZQE A 127 343 UNP Q56026 SIPD_SALTY 127 343 DBREF 3ZQE B 1 80 UNP P41784 PRGI_SALTY 1 80 DBREF 3ZQE B 122 126 PDB 3ZQE 3ZQE 122 126 DBREF 3ZQE B 127 343 UNP Q56026 SIPD_SALTY 127 343 SEQADV 3ZQE GLY A -2 UNP P41784 EXPRESSION TAG SEQADV 3ZQE SER A -1 UNP P41784 EXPRESSION TAG SEQADV 3ZQE HIS A 0 UNP P41784 EXPRESSION TAG SEQADV 3ZQE GLY B -2 UNP P41784 EXPRESSION TAG SEQADV 3ZQE SER B -1 UNP P41784 EXPRESSION TAG SEQADV 3ZQE HIS B 0 UNP P41784 EXPRESSION TAG SEQRES 1 A 305 GLY SER HIS MET ALA THR PRO TRP SER GLY TYR LEU ASP SEQRES 2 A 305 ASP VAL SER ALA LYS PHE ASP THR GLY VAL ASP ASN LEU SEQRES 3 A 305 GLN THR GLN VAL THR GLU ALA LEU ASP LYS LEU ALA ALA SEQRES 4 A 305 LYS PRO SER ASP PRO ALA LEU LEU ALA ALA TYR GLN SER SEQRES 5 A 305 LYS LEU SER GLU TYR ASN LEU TYR ARG ASN ALA GLN SER SEQRES 6 A 305 ASN THR VAL LYS VAL PHE LYS ASP ILE ASP ALA ALA ILE SEQRES 7 A 305 ILE GLN ASN PHE ARG GLY GLY SER GLY GLY THR THR ILE SEQRES 8 A 305 SER ASP ALA GLU ILE TRP ASP MET VAL SER GLN ASN ILE SEQRES 9 A 305 SER ALA ILE GLY ASP SER TYR LEU GLY VAL TYR GLU ASN SEQRES 10 A 305 VAL VAL ALA VAL TYR THR ASP PHE TYR GLN ALA PHE SER SEQRES 11 A 305 ASP ILE LEU SER LYS MET GLY GLY TRP LEU LEU PRO GLY SEQRES 12 A 305 LYS ASP GLY ASN THR VAL LYS LEU ASP VAL THR SER LEU SEQRES 13 A 305 LYS ASN ASP LEU ASN SER LEU VAL ASN LYS TYR ASN GLN SEQRES 14 A 305 ILE ASN SER ASN THR VAL LEU PHE PRO ALA GLN SER GLY SEQRES 15 A 305 SER GLY VAL LYS VAL ALA THR GLU ALA GLU ALA ARG GLN SEQRES 16 A 305 TRP LEU SER GLU LEU ASN LEU PRO ASN SER CYS LEU LYS SEQRES 17 A 305 SER TYR GLY SER GLY TYR VAL VAL THR VAL ASP LEU THR SEQRES 18 A 305 PRO LEU GLN LYS MET VAL GLN ASP ILE ASP GLY LEU GLY SEQRES 19 A 305 ALA PRO GLY LYS ASP SER LYS LEU GLU MET ASP ASN ALA SEQRES 20 A 305 LYS TYR GLN ALA TRP GLN SER GLY PHE LYS ALA GLN GLU SEQRES 21 A 305 GLU ASN MET LYS THR THR LEU GLN THR LEU THR GLN LYS SEQRES 22 A 305 TYR SER ASN ALA ASN SER LEU TYR ASP ASN LEU VAL LYS SEQRES 23 A 305 VAL LEU SER SER THR ILE SER SER SER LEU GLU THR ALA SEQRES 24 A 305 LYS SER PHE LEU GLN GLY SEQRES 1 B 305 GLY SER HIS MET ALA THR PRO TRP SER GLY TYR LEU ASP SEQRES 2 B 305 ASP VAL SER ALA LYS PHE ASP THR GLY VAL ASP ASN LEU SEQRES 3 B 305 GLN THR GLN VAL THR GLU ALA LEU ASP LYS LEU ALA ALA SEQRES 4 B 305 LYS PRO SER ASP PRO ALA LEU LEU ALA ALA TYR GLN SER SEQRES 5 B 305 LYS LEU SER GLU TYR ASN LEU TYR ARG ASN ALA GLN SER SEQRES 6 B 305 ASN THR VAL LYS VAL PHE LYS ASP ILE ASP ALA ALA ILE SEQRES 7 B 305 ILE GLN ASN PHE ARG GLY GLY SER GLY GLY THR THR ILE SEQRES 8 B 305 SER ASP ALA GLU ILE TRP ASP MET VAL SER GLN ASN ILE SEQRES 9 B 305 SER ALA ILE GLY ASP SER TYR LEU GLY VAL TYR GLU ASN SEQRES 10 B 305 VAL VAL ALA VAL TYR THR ASP PHE TYR GLN ALA PHE SER SEQRES 11 B 305 ASP ILE LEU SER LYS MET GLY GLY TRP LEU LEU PRO GLY SEQRES 12 B 305 LYS ASP GLY ASN THR VAL LYS LEU ASP VAL THR SER LEU SEQRES 13 B 305 LYS ASN ASP LEU ASN SER LEU VAL ASN LYS TYR ASN GLN SEQRES 14 B 305 ILE ASN SER ASN THR VAL LEU PHE PRO ALA GLN SER GLY SEQRES 15 B 305 SER GLY VAL LYS VAL ALA THR GLU ALA GLU ALA ARG GLN SEQRES 16 B 305 TRP LEU SER GLU LEU ASN LEU PRO ASN SER CYS LEU LYS SEQRES 17 B 305 SER TYR GLY SER GLY TYR VAL VAL THR VAL ASP LEU THR SEQRES 18 B 305 PRO LEU GLN LYS MET VAL GLN ASP ILE ASP GLY LEU GLY SEQRES 19 B 305 ALA PRO GLY LYS ASP SER LYS LEU GLU MET ASP ASN ALA SEQRES 20 B 305 LYS TYR GLN ALA TRP GLN SER GLY PHE LYS ALA GLN GLU SEQRES 21 B 305 GLU ASN MET LYS THR THR LEU GLN THR LEU THR GLN LYS SEQRES 22 B 305 TYR SER ASN ALA ASN SER LEU TYR ASP ASN LEU VAL LYS SEQRES 23 B 305 VAL LEU SER SER THR ILE SER SER SER LEU GLU THR ALA SEQRES 24 B 305 LYS SER PHE LEU GLN GLY HET GOL A1337 6 HET GOL A1338 6 HET DXC B1079 28 HETNAM GOL GLYCEROL HETNAM DXC (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DXC DEOXYCHOLIC ACID FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 DXC C24 H40 O4 FORMUL 6 HOH *97(H2 O) HELIX 1 1 TYR A 8 LYS A 37 1 30 HELIX 2 2 ASP A 40 ASN A 63 1 24 HELIX 3 3 ASN A 63 ILE A 76 1 14 HELIX 4 4 SER A 130 GLN A 140 1 11 HELIX 5 5 ILE A 142 SER A 148 1 7 HELIX 6 6 TYR A 149 SER A 172 1 24 HELIX 7 7 LYS A 173 LEU A 178 5 6 HELIX 8 8 ASP A 190 ASN A 206 1 17 HELIX 9 9 THR A 227 ASN A 239 1 13 HELIX 10 10 PRO A 241 SER A 243 5 3 HELIX 11 11 LEU A 258 GLY A 270 1 13 HELIX 12 12 ASP A 283 LEU A 334 1 52 HELIX 13 13 SER B 13 LYS B 37 1 25 HELIX 14 14 ASP B 40 ASN B 63 1 24 HELIX 15 15 GLY B 146 SER B 172 1 27 HELIX 16 16 LYS B 173 TRP B 177 1 5 HELIX 17 17 LYS B 182 GLY B 184 5 3 HELIX 18 18 ASP B 190 GLN B 207 1 18 HELIX 19 19 THR B 227 ASN B 239 1 13 HELIX 20 20 PRO B 241 SER B 243 5 3 HELIX 21 21 LEU B 258 GLY B 272 1 15 HELIX 22 22 ASN B 284 SER B 339 1 56 SHEET 1 AA 2 VAL A 187 LEU A 189 0 SHEET 2 AA 2 LEU A 280 MET A 282 -1 O LEU A 280 N LEU A 189 SHEET 1 AB 3 VAL A 213 PHE A 215 0 SHEET 2 AB 3 GLY A 251 THR A 255 -1 O VAL A 254 N LEU A 214 SHEET 3 AB 3 LEU A 245 TYR A 248 -1 O LYS A 246 N VAL A 253 SHEET 1 BA 3 LEU B 178 PRO B 180 0 SHEET 2 BA 3 THR B 186 LEU B 189 -1 O LYS B 188 N LEU B 179 SHEET 3 BA 3 LEU B 280 ASP B 283 -1 O LEU B 280 N LEU B 189 SHEET 1 BB 3 VAL B 213 PHE B 215 0 SHEET 2 BB 3 GLY B 251 THR B 255 -1 O VAL B 254 N LEU B 214 SHEET 3 BB 3 LEU B 245 TYR B 248 -1 O LYS B 246 N VAL B 253 CISPEP 1 PHE A 215 PRO A 216 0 -0.18 CISPEP 2 PHE B 215 PRO B 216 0 -0.17 SITE 1 AC1 6 LYS A 37 SER A 39 HOH A2056 LEU B 31 SITE 2 AC1 6 TYR B 47 TYR B 54 SITE 1 AC2 7 LEU A 150 TYR A 248 GLY A 249 ASN A 316 SITE 2 AC2 7 TYR A 319 ASP A 320 GLN B 288 SITE 1 AC3 4 ASN A 300 THR A 303 THR A 304 GLN B 310 CRYST1 171.152 47.456 102.627 90.00 121.96 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005843 0.000000 0.003645 0.00000 SCALE2 0.000000 0.021072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011485 0.00000 MTRIX1 1 -0.685800 -0.688800 0.235000 38.67000 1 MTRIX2 1 -0.682700 0.497200 -0.535400 24.07000 1 MTRIX3 1 0.252000 -0.527600 -0.811200 17.28000 1