HEADER CHAPERONE 16-JUN-11 3ZRI TITLE N-DOMAIN OF CLPV FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLPB PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-DOMAIN, RESIDUES 2-159; COMPND 5 SYNONYM: CLPV; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 345076; SOURCE 4 STRAIN: V52; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: XL-1 BLUE KEYWDS CHAPERONE, HSP100 PROTEINS, AAA+ PROTEINS, T6SS, SECRETION, VIRULENCE EXPDTA X-RAY DIFFRACTION AUTHOR E.D.LENHERR,J.KOPP,I.SINNING REVDAT 4 23-OCT-24 3ZRI 1 REMARK REVDAT 3 08-MAY-19 3ZRI 1 REMARK LINK REVDAT 2 09-JAN-13 3ZRI 1 JRNL REMARK VERSN REVDAT 1 29-JUN-11 3ZRI 0 JRNL AUTH A.PIETROSIUK,E.D.LENHERR,S.FALK,G.BONEMANN,J.KOPP, JRNL AUTH 2 H.ZENTGRAF,I.SINNING,A.MOGK JRNL TITL MOLECULAR BASIS FOR THE UNIQUE ROLE OF THE AAA+ CHAPERONE JRNL TITL 2 CLPV IN TYPE VI PROTEIN SECRETION. JRNL REF J.BIOL.CHEM. V. 286 30010 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21733841 JRNL DOI 10.1074/JBC.M111.253377 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1400 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1913 ; 1.879 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 5.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;42.913 ;24.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 256 ;13.807 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.336 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 227 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1052 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 856 ; 1.379 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1390 ; 2.249 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 544 ; 3.403 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 515 ; 5.314 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1340 -42.7890 -3.2709 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.1150 REMARK 3 T33: 0.0984 T12: 0.0030 REMARK 3 T13: -0.0264 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.4892 L22: 7.1572 REMARK 3 L33: 6.2098 L12: -2.8073 REMARK 3 L13: 1.6290 L23: -7.4763 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: 0.0416 S13: 0.0847 REMARK 3 S21: 0.0786 S22: -0.1313 S23: -0.3391 REMARK 3 S31: -0.1076 S32: 0.3111 S33: 0.1993 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3876 -19.2813 -19.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.0897 REMARK 3 T33: 0.1719 T12: 0.0771 REMARK 3 T13: 0.2092 T23: 0.1021 REMARK 3 L TENSOR REMARK 3 L11: 0.6177 L22: 2.2924 REMARK 3 L33: -0.5686 L12: 0.8854 REMARK 3 L13: 1.2714 L23: -1.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.1333 S12: 0.1570 S13: -0.0100 REMARK 3 S21: -0.2201 S22: -0.1019 S23: -0.3140 REMARK 3 S31: -0.0471 S32: 0.0493 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2987 -11.8370 -13.9582 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.0503 REMARK 3 T33: 0.1290 T12: 0.0452 REMARK 3 T13: -0.0039 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.4060 L22: 0.2776 REMARK 3 L33: 1.8143 L12: 0.5598 REMARK 3 L13: 0.8531 L23: 0.1293 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: -0.0370 S13: 0.1796 REMARK 3 S21: -0.1374 S22: -0.0883 S23: 0.0146 REMARK 3 S31: -0.2748 S32: -0.0737 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7533 -11.7025 -5.5114 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0727 REMARK 3 T33: 0.1266 T12: -0.0343 REMARK 3 T13: 0.0095 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.4742 L22: 4.2455 REMARK 3 L33: 0.9345 L12: 0.1009 REMARK 3 L13: 0.6487 L23: 0.9137 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: -0.1293 S13: 0.3063 REMARK 3 S21: -0.0969 S22: 0.1308 S23: -0.0471 REMARK 3 S31: -0.0670 S32: 0.0228 S33: -0.1627 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6024 -27.2909 -13.0668 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.0727 REMARK 3 T33: 0.0935 T12: 0.0123 REMARK 3 T13: 0.0043 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6855 L22: 1.3935 REMARK 3 L33: 0.8084 L12: -0.7596 REMARK 3 L13: -0.0764 L23: 0.0083 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: 0.0091 S13: -0.0021 REMARK 3 S21: -0.1205 S22: -0.0607 S23: -0.0453 REMARK 3 S31: 0.0062 S32: -0.0611 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5326 -22.9659 -16.9367 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.1003 REMARK 3 T33: 0.0979 T12: 0.0491 REMARK 3 T13: -0.0304 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.2020 L22: 0.4095 REMARK 3 L33: 1.9889 L12: 0.1567 REMARK 3 L13: 0.8910 L23: -0.0240 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: 0.0544 S13: -0.0068 REMARK 3 S21: -0.0609 S22: -0.0749 S23: 0.1289 REMARK 3 S31: 0.0215 S32: -0.2033 S33: -0.0138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.DUE TO LESS THAN 100% INCORPORATION OF SEMET, ONLY A REMARK 3 FRACTION WAS MODELLED REMARK 4 REMARK 4 3ZRI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18149 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NAACETATE PH 7.0, 20% (W/V) PEG REMARK 280 3350, 18C, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.94900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.51650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.94900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.51650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.94900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.49500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.51650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.94900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.49500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.51650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -72.99000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 THR A 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 28 CB CYS A 28 SG -0.210 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 104 -81.70 -121.96 REMARK 500 ARG A 123 51.49 -113.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZRJ RELATED DB: PDB REMARK 900 COMPLEX OF CLPV N-DOMAIN WITH VIPB PEPTIDE DBREF 3ZRI A 2 159 UNP A1EKV2 A1EKV2_VIBCH 2 159 SEQADV 3ZRI MSE A -11 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI ARG A -10 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI GLY A -9 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI SER A -8 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI HIS A -7 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI HIS A -6 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI HIS A -5 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI HIS A -4 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI HIS A -3 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI HIS A -2 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI THR A -1 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI ASP A 0 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRI PRO A 1 UNP A1EKV2 EXPRESSION TAG SEQRES 1 A 171 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 171 ILE ARG ILE GLU LEU PRO THR LEU ILE ALA LYS LEU ASN SEQRES 3 A 171 ALA GLN SER LYS LEU ALA LEU GLU GLN ALA ALA SER LEU SEQRES 4 A 171 CYS ILE GLU ARG GLN HIS PRO GLU VAL THR LEU GLU HIS SEQRES 5 A 171 TYR LEU ASP VAL LEU LEU ASP ASN PRO LEU SER ASP VAL SEQRES 6 A 171 ARG LEU VAL LEU LYS GLN ALA GLY LEU GLU VAL ASP GLN SEQRES 7 A 171 VAL LYS GLN ALA ILE ALA SER THR TYR SER ARG GLU GLN SEQRES 8 A 171 VAL LEU ASP THR TYR PRO ALA PHE SER PRO LEU LEU VAL SEQRES 9 A 171 GLU LEU LEU GLN GLU ALA TRP LEU LEU SER SER THR GLU SEQRES 10 A 171 LEU GLU GLN ALA GLU LEU ARG SER GLY ALA ILE PHE LEU SEQRES 11 A 171 ALA ALA LEU THR ARG ALA ASP ARG TYR LEU SER PHE LYS SEQRES 12 A 171 LEU ILE SER LEU PHE GLU GLY ILE ASN ARG GLU ASN LEU SEQRES 13 A 171 LYS LYS HIS PHE ALA MSE ILE LEU SER ASP SER ALA GLU SEQRES 14 A 171 THR THR MODRES 3ZRI MSE A 150 MET SELENOMETHIONINE HET MSE A 150 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 HOH *87(H2 O) HELIX 1 1 GLU A 5 LEU A 13 1 9 HELIX 2 2 ASN A 14 GLN A 32 1 19 HELIX 3 3 THR A 37 LEU A 46 1 10 HELIX 4 4 SER A 51 ALA A 60 1 10 HELIX 5 5 GLU A 63 TYR A 75 1 13 HELIX 6 6 SER A 88 THR A 104 1 17 HELIX 7 7 ARG A 112 ARG A 123 1 12 HELIX 8 8 ARG A 123 LEU A 128 1 6 HELIX 9 9 SER A 129 PHE A 136 1 8 HELIX 10 10 ASN A 140 HIS A 147 1 8 HELIX 11 11 HIS A 147 LEU A 152 1 6 SHEET 1 AA 2 GLU A 35 VAL A 36 0 SHEET 2 AA 2 ALA A 86 PHE A 87 1 O ALA A 86 N VAL A 36 LINK C ALA A 149 N MSE A 150 1555 1555 1.32 LINK C MSE A 150 N ILE A 151 1555 1555 1.36 CRYST1 71.898 72.990 73.033 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013692 0.00000