HEADER CHAPERONE/PEPTIDE 16-JUN-11 3ZRJ TITLE COMPLEX OF CLPV N-DOMAIN WITH VIPB PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLPB PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-DOMAIN, RESIDUES 2-159; COMPND 5 SYNONYM: CLPV; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VIPB; COMPND 9 CHAIN: X, Y; COMPND 10 FRAGMENT: RESIDUES 15-28; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 345076; SOURCE 4 STRAIN: V52; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: XL-1 BLUE; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 12 ORGANISM_TAXID: 345076 KEYWDS CHAPERONE-PEPTIDE COMPLEX, HSP100 PROTEINS, AAA+ PROTEINS, T6SS, KEYWDS 2 SECRETION, VIRULENCE EXPDTA X-RAY DIFFRACTION AUTHOR E.D.LENHERR,J.KOPP,I.SINNING REVDAT 4 13-NOV-24 3ZRJ 1 REMARK REVDAT 3 15-MAY-19 3ZRJ 1 REMARK REVDAT 2 17-APR-13 3ZRJ 1 JRNL REVDAT 1 06-JUL-11 3ZRJ 0 JRNL AUTH A.PIETROSIUK,E.D.LENHERR,S.FALK,G.BONEMANN,J.KOPP, JRNL AUTH 2 H.ZENTGRAF,I.SINNING,A.MOGK JRNL TITL MOLECULAR BASIS FOR THE UNIQUE ROLE OF THE AAA+ CHAPERONE JRNL TITL 2 CLPV IN TYPE VI PROTEIN SECRETION. JRNL REF J.BIOL.CHEM. V. 286 30010 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21733841 JRNL DOI 10.1074/JBC.M111.253377 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1411 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : 2.99000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.535 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2849 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3868 ; 1.836 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;42.396 ;24.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;14.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.372 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2096 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1763 ; 1.226 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2846 ; 2.054 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 3.430 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1016 ; 5.518 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6058 11.4565 12.9311 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1325 REMARK 3 T33: 0.1660 T12: -0.0116 REMARK 3 T13: -0.0111 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.4884 L22: 4.6172 REMARK 3 L33: 0.2259 L12: 1.9751 REMARK 3 L13: -1.2097 L23: -1.3084 REMARK 3 S TENSOR REMARK 3 S11: -0.2644 S12: 0.5225 S13: -0.1439 REMARK 3 S21: -0.3042 S22: 0.3156 S23: 0.3923 REMARK 3 S31: 0.0971 S32: -0.0194 S33: -0.0512 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7197 16.1055 16.5602 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1803 REMARK 3 T33: 0.1067 T12: -0.0030 REMARK 3 T13: 0.0052 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.3301 L22: -0.0192 REMARK 3 L33: 1.6067 L12: 0.4369 REMARK 3 L13: 0.7348 L23: 0.5490 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.2136 S13: 0.0093 REMARK 3 S21: 0.0623 S22: 0.0110 S23: -0.0091 REMARK 3 S31: 0.0001 S32: 0.2965 S33: -0.0277 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9900 10.4136 22.3469 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.1807 REMARK 3 T33: 0.1048 T12: 0.0226 REMARK 3 T13: -0.0124 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0945 L22: 0.9521 REMARK 3 L33: 1.3797 L12: -0.1146 REMARK 3 L13: 0.6781 L23: -0.4034 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: 0.1212 S13: -0.0546 REMARK 3 S21: 0.0570 S22: -0.1407 S23: -0.1095 REMARK 3 S31: 0.1807 S32: 0.3461 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9699 15.6341 27.0574 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1026 REMARK 3 T33: 0.1233 T12: -0.0064 REMARK 3 T13: 0.0060 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.0701 L22: 0.3591 REMARK 3 L33: 0.8184 L12: 0.0495 REMARK 3 L13: 0.2597 L23: -0.0534 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.0548 S13: 0.0232 REMARK 3 S21: 0.0290 S22: 0.0009 S23: 0.0484 REMARK 3 S31: 0.0034 S32: -0.0083 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -6 B 4 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9276 4.5127 30.9847 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: 0.0816 REMARK 3 T33: 0.1589 T12: -0.0273 REMARK 3 T13: -0.0172 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 8.1975 L22: 5.1105 REMARK 3 L33: 1.8108 L12: -4.9745 REMARK 3 L13: 1.3410 L23: -1.2112 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.4481 S13: -0.2833 REMARK 3 S21: 0.1991 S22: 0.2076 S23: 0.0468 REMARK 3 S31: 0.1286 S32: -0.1914 S33: -0.1991 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4018 16.9278 21.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.1293 REMARK 3 T33: 0.1230 T12: 0.0140 REMARK 3 T13: 0.0172 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.4009 L22: 0.3430 REMARK 3 L33: 0.8421 L12: 0.2573 REMARK 3 L13: -0.4971 L23: -0.0812 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: 0.0713 S13: 0.1666 REMARK 3 S21: 0.0445 S22: -0.0367 S23: 0.0268 REMARK 3 S31: -0.0130 S32: -0.1983 S33: -0.0689 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): -32.0086 9.1056 38.2875 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.1665 REMARK 3 T33: 0.0783 T12: -0.0161 REMARK 3 T13: -0.0269 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.8418 L22: -0.3807 REMARK 3 L33: 6.0129 L12: -0.4857 REMARK 3 L13: -0.5623 L23: 0.2310 REMARK 3 S TENSOR REMARK 3 S11: 0.1414 S12: 0.0354 S13: -0.0751 REMARK 3 S21: 0.1046 S22: 0.0233 S23: -0.0999 REMARK 3 S31: 0.3123 S32: -0.0083 S33: -0.1647 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 158 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4196 15.0401 14.6361 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.1162 REMARK 3 T33: 0.1289 T12: -0.0004 REMARK 3 T13: 0.0240 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.1305 L22: 0.0316 REMARK 3 L33: 0.8549 L12: 0.0263 REMARK 3 L13: -0.4726 L23: -0.0745 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: 0.2160 S13: 0.0413 REMARK 3 S21: 0.0274 S22: -0.0112 S23: -0.0940 REMARK 3 S31: 0.0191 S32: -0.0924 S33: -0.0324 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 16 X 29 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7743 13.7424 2.9001 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.2305 REMARK 3 T33: 0.0713 T12: 0.0510 REMARK 3 T13: -0.0317 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.8356 L22: 1.6472 REMARK 3 L33: 5.4430 L12: 2.0028 REMARK 3 L13: 0.1522 L23: -2.3827 REMARK 3 S TENSOR REMARK 3 S11: 0.1709 S12: 0.2829 S13: 0.0358 REMARK 3 S21: -0.0518 S22: -0.0739 S23: 0.1639 REMARK 3 S31: -0.0609 S32: 0.1611 S33: -0.0970 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 18 Y 27 REMARK 3 ORIGIN FOR THE GROUP (A): -23.4510 18.8364 37.0228 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.4979 REMARK 3 T33: 0.0432 T12: -0.2949 REMARK 3 T13: 0.1197 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 4.2772 L22: 3.9973 REMARK 3 L33: 8.7824 L12: -1.1763 REMARK 3 L13: 1.8399 L23: -4.0958 REMARK 3 S TENSOR REMARK 3 S11: 0.8434 S12: -0.7875 S13: 0.2171 REMARK 3 S21: 0.5327 S22: -0.7731 S23: 0.1143 REMARK 3 S31: -0.8726 S32: 1.1280 S33: -0.0703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97627 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28218 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 5.5, 17.5% (W/V) PEG 8000, REMARK 280 4C, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.12000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.12000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 LEU A 81 REMARK 465 ASP A 82 REMARK 465 THR A 159 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 THR B 159 REMARK 465 LYS X 12 REMARK 465 LYS X 13 REMARK 465 TRP X 14 REMARK 465 ALA X 15 REMARK 465 LYS X 30 REMARK 465 LYS X 31 REMARK 465 LYS Y 12 REMARK 465 LYS Y 13 REMARK 465 TRP Y 14 REMARK 465 ALA Y 15 REMARK 465 GLN Y 16 REMARK 465 GLY Y 17 REMARK 465 ARG Y 28 REMARK 465 CYS Y 29 REMARK 465 LYS Y 30 REMARK 465 LYS Y 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2124 O HOH A 2125 1.95 REMARK 500 O HOH A 2090 O HOH X 2005 2.14 REMARK 500 O HOH B 2107 O HOH B 2108 2.19 REMARK 500 O HOH A 2040 O HOH A 2087 2.19 REMARK 500 O HOH A 2046 O HOH A 2063 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 104 -88.78 -119.87 REMARK 500 ARG A 123 54.06 -113.37 REMARK 500 TYR B 75 54.99 -94.05 REMARK 500 THR B 104 -91.72 -116.52 REMARK 500 ARG B 123 52.66 -116.82 REMARK 500 GLU B 157 30.98 -99.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1159 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZRI RELATED DB: PDB REMARK 900 N-DOMAIN OF CLPV FROM VIBRIO CHOLERAE DBREF 3ZRJ A 2 159 UNP A1EKV2 A1EKV2_VIBCH 2 159 DBREF 3ZRJ B 2 159 UNP A1EKV2 A1EKV2_VIBCH 2 159 DBREF 3ZRJ X 15 28 UNP Q9KN57 Q9KN57_VIBCH 15 28 DBREF 3ZRJ Y 15 28 UNP Q9KN57 Q9KN57_VIBCH 15 28 SEQADV 3ZRJ MET A -11 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ ARG A -10 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ GLY A -9 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ SER A -8 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS A -7 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS A -6 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS A -5 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS A -4 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS A -3 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS A -2 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ THR A -1 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ ASP A 0 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ PRO A 1 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ MET B -11 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ ARG B -10 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ GLY B -9 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ SER B -8 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS B -7 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS B -6 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS B -5 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS B -4 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS B -3 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ HIS B -2 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ THR B -1 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ ASP B 0 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ PRO B 1 UNP A1EKV2 EXPRESSION TAG SEQADV 3ZRJ LYS X 12 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ LYS X 13 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ TRP X 14 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ CYS X 29 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ LYS X 30 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ LYS X 31 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ LYS Y 12 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ LYS Y 13 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ TRP Y 14 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ CYS Y 29 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ LYS Y 30 UNP Q9KN57 EXPRESSION TAG SEQADV 3ZRJ LYS Y 31 UNP Q9KN57 EXPRESSION TAG SEQRES 1 A 171 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 171 ILE ARG ILE GLU LEU PRO THR LEU ILE ALA LYS LEU ASN SEQRES 3 A 171 ALA GLN SER LYS LEU ALA LEU GLU GLN ALA ALA SER LEU SEQRES 4 A 171 CYS ILE GLU ARG GLN HIS PRO GLU VAL THR LEU GLU HIS SEQRES 5 A 171 TYR LEU ASP VAL LEU LEU ASP ASN PRO LEU SER ASP VAL SEQRES 6 A 171 ARG LEU VAL LEU LYS GLN ALA GLY LEU GLU VAL ASP GLN SEQRES 7 A 171 VAL LYS GLN ALA ILE ALA SER THR TYR SER ARG GLU GLN SEQRES 8 A 171 VAL LEU ASP THR TYR PRO ALA PHE SER PRO LEU LEU VAL SEQRES 9 A 171 GLU LEU LEU GLN GLU ALA TRP LEU LEU SER SER THR GLU SEQRES 10 A 171 LEU GLU GLN ALA GLU LEU ARG SER GLY ALA ILE PHE LEU SEQRES 11 A 171 ALA ALA LEU THR ARG ALA ASP ARG TYR LEU SER PHE LYS SEQRES 12 A 171 LEU ILE SER LEU PHE GLU GLY ILE ASN ARG GLU ASN LEU SEQRES 13 A 171 LYS LYS HIS PHE ALA MET ILE LEU SER ASP SER ALA GLU SEQRES 14 A 171 THR THR SEQRES 1 B 171 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 B 171 ILE ARG ILE GLU LEU PRO THR LEU ILE ALA LYS LEU ASN SEQRES 3 B 171 ALA GLN SER LYS LEU ALA LEU GLU GLN ALA ALA SER LEU SEQRES 4 B 171 CYS ILE GLU ARG GLN HIS PRO GLU VAL THR LEU GLU HIS SEQRES 5 B 171 TYR LEU ASP VAL LEU LEU ASP ASN PRO LEU SER ASP VAL SEQRES 6 B 171 ARG LEU VAL LEU LYS GLN ALA GLY LEU GLU VAL ASP GLN SEQRES 7 B 171 VAL LYS GLN ALA ILE ALA SER THR TYR SER ARG GLU GLN SEQRES 8 B 171 VAL LEU ASP THR TYR PRO ALA PHE SER PRO LEU LEU VAL SEQRES 9 B 171 GLU LEU LEU GLN GLU ALA TRP LEU LEU SER SER THR GLU SEQRES 10 B 171 LEU GLU GLN ALA GLU LEU ARG SER GLY ALA ILE PHE LEU SEQRES 11 B 171 ALA ALA LEU THR ARG ALA ASP ARG TYR LEU SER PHE LYS SEQRES 12 B 171 LEU ILE SER LEU PHE GLU GLY ILE ASN ARG GLU ASN LEU SEQRES 13 B 171 LYS LYS HIS PHE ALA MET ILE LEU SER ASP SER ALA GLU SEQRES 14 B 171 THR THR SEQRES 1 X 20 LYS LYS TRP ALA GLN GLY SER LEU LEU ASP GLU ILE MET SEQRES 2 X 20 ALA GLN THR ARG CYS LYS LYS SEQRES 1 Y 20 LYS LYS TRP ALA GLN GLY SER LEU LEU ASP GLU ILE MET SEQRES 2 Y 20 ALA GLN THR ARG CYS LYS LYS HET EDO A1159 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *253(H2 O) HELIX 1 1 GLU A 5 ALA A 11 1 7 HELIX 2 2 ASN A 14 GLN A 32 1 19 HELIX 3 3 THR A 37 LEU A 46 1 10 HELIX 4 4 SER A 51 ALA A 60 1 10 HELIX 5 5 GLU A 63 SER A 73 1 11 HELIX 6 6 SER A 88 THR A 104 1 17 HELIX 7 7 ARG A 112 ARG A 123 1 12 HELIX 8 8 ARG A 123 LEU A 128 1 6 HELIX 9 9 SER A 129 GLU A 137 1 9 HELIX 10 10 ASN A 140 HIS A 147 1 8 HELIX 11 11 HIS A 147 LEU A 152 1 6 HELIX 12 12 GLU B 5 LYS B 12 1 8 HELIX 13 13 ASN B 14 ARG B 31 1 18 HELIX 14 14 THR B 37 LEU B 46 1 10 HELIX 15 15 SER B 51 ALA B 60 1 10 HELIX 16 16 GLU B 63 SER B 73 1 11 HELIX 17 17 SER B 88 THR B 104 1 17 HELIX 18 18 ARG B 112 ARG B 123 1 12 HELIX 19 19 ARG B 123 LEU B 128 1 6 HELIX 20 20 SER B 129 GLU B 137 1 9 HELIX 21 21 ASN B 140 HIS B 147 1 8 HELIX 22 22 HIS B 147 LEU B 152 1 6 HELIX 23 23 SER X 18 CYS X 29 1 12 HELIX 24 24 SER Y 18 THR Y 27 1 10 SHEET 1 AA 2 GLU A 35 VAL A 36 0 SHEET 2 AA 2 ALA A 86 PHE A 87 1 O ALA A 86 N VAL A 36 SSBOND 1 CYS X 29 CYS X 29 1555 2555 2.88 SITE 1 AC1 5 ALA A 60 GLY A 138 ILE A 139 ASN A 140 SITE 2 AC1 5 HOH A2123 CRYST1 124.240 37.610 88.130 90.00 107.54 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008049 0.000000 0.002544 0.00000 SCALE2 0.000000 0.026589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011900 0.00000