HEADER TRANSFERASE 17-JUN-11 3ZRR TITLE CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF A THERMOPHILIC ARCHAEAL TITLE 2 SERINE : PYRUVATE AMINOTRANSFERASE FROM SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-PYRUVATE AMINOTRANSFERASE (AGXT); COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.51; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SAYER,M.BOMMER,M.N.ISUPOV,J.WARD,J.LITTLECHILD REVDAT 3 08-MAY-24 3ZRR 1 REMARK LINK REVDAT 2 11-JUL-12 3ZRR 1 JRNL REVDAT 1 27-JUN-12 3ZRR 0 JRNL AUTH C.SAYER,M.BOMMER,M.N.ISUPOV,J.WARD,J.LITTLECHILD JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 THERMOPHILIC SERINE:PYRUVATE AMINOTRANSFERASE FROM JRNL TITL 3 SULFOLOBUS SOLFATARICUS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 763 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22751661 JRNL DOI 10.1107/S0907444912011274 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0062 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 51737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3980 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 505 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.43000 REMARK 3 B22 (A**2) : 2.80000 REMARK 3 B33 (A**2) : -2.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.98000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6395 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8759 ; 1.301 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 865 ; 5.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;34.197 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1154 ;15.588 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;17.883 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1003 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4843 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290048735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : XENOCS FOX2D CU25_25P MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.41750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.60250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.41750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.60250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2029 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 384 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 ARG B 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 167 -36.06 -132.85 REMARK 500 ALA A 170 -40.94 -137.36 REMARK 500 LYS A 189 -114.31 -104.80 REMARK 500 VAL A 308 -56.76 -128.24 REMARK 500 GLU A 324 76.87 -118.87 REMARK 500 GLU A 324 76.76 -118.82 REMARK 500 SER B 167 -35.43 -133.81 REMARK 500 ALA B 170 -41.30 -133.13 REMARK 500 LYS B 189 -114.05 -105.06 REMARK 500 TYR B 219 -60.22 -97.57 REMARK 500 VAL B 308 -56.76 -127.38 REMARK 500 GLU B 324 77.07 -119.41 REMARK 500 GLU B 324 75.11 -118.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1384 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 16 OD1 REMARK 620 2 ASP A 16 OD2 50.5 REMARK 620 3 GLU A 23 OE1 99.9 133.0 REMARK 620 4 GLU A 23 OE2 89.2 139.5 46.6 REMARK 620 5 HOH A2014 O 86.5 64.9 79.6 124.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1385 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 148 OD2 REMARK 620 2 ASP A 148 OD1 50.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1386 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 288 OE2 REMARK 620 2 GLU A 288 OE1 48.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1384 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 16 OD2 REMARK 620 2 ASP B 16 OD1 52.7 REMARK 620 3 GLU B 23 OE1 131.1 113.9 REMARK 620 4 GLU B 23 OE2 136.1 86.3 46.6 REMARK 620 5 HOH B2012 O 66.0 99.1 72.0 113.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXG A 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXG B 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1386 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZRP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF A THERMOPHILIC REMARK 900 ARCHAEAL SERINE : PYRUVATE AMINOTRANSFERASE FROM SULFOLOBUS REMARK 900 SOLFATARICUS REMARK 900 RELATED ID: 3ZRQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND SUBSTRATE SPECIFICITY OF A THERMOPHILIC REMARK 900 ARCHAEAL SERINE : PYRUVATE AMINOTRANSFERASE FROM SULFOLOBUS REMARK 900 SOLFATARICUS DBREF 3ZRR A 1 384 UNP Q97VM5 Q97VM5_SULSO 1 384 DBREF 3ZRR B 1 384 UNP Q97VM5 Q97VM5_SULSO 1 384 SEQRES 1 A 384 MET ASP LYS LEU LEU LEU HIS VAL GLY PRO THR THR ILE SEQRES 2 A 384 LYS GLU ASP VAL LEU VAL ALA GLY LEU GLU ASN ASN VAL SEQRES 3 A 384 GLY PHE THR SER LYS GLU PHE VAL GLU ALA LEU ALA TYR SEQRES 4 A 384 SER LEU LYS GLY LEU ARG TYR VAL MET GLY ALA SER LYS SEQRES 5 A 384 ASN TYR GLN PRO LEU ILE ILE PRO GLY GLY GLY THR SER SEQRES 6 A 384 ALA MET GLU SER VAL THR SER LEU LEU LYS PRO ASN ASP SEQRES 7 A 384 LYS ILE LEU VAL VAL SER ASN GLY VAL PHE GLY ASP ARG SEQRES 8 A 384 TRP GLU GLN ILE PHE LYS ARG TYR PRO VAL ASN VAL LYS SEQRES 9 A 384 VAL LEU ARG PRO SER PRO GLY ASP TYR VAL LYS PRO GLY SEQRES 10 A 384 GLU VAL GLU GLU GLU VAL ARG LYS SER GLU TYR LYS LEU SEQRES 11 A 384 VAL ALA LEU THR HIS VAL GLU THR SER THR GLY VAL ARG SEQRES 12 A 384 GLU PRO VAL LYS ASP VAL ILE ASN LYS ILE ARG LYS TYR SEQRES 13 A 384 VAL GLU LEU ILE VAL VAL ASP GLY VAL SER SER VAL GLY SEQRES 14 A 384 ALA GLU GLU VAL LYS ALA GLU GLU TRP ASN VAL ASP VAL SEQRES 15 A 384 TYR LEU THR ALA SER GLN LYS ALA LEU GLY SER ALA ALA SEQRES 16 A 384 GLY LEU GLY LEU LEU LEU LEU SER PRO LYS ALA LEU SER SEQRES 17 A 384 ILE LEU ASP SER GLN ASN SER ILE ALA GLY TYR TYR LEU SEQRES 18 A 384 ASP LEU ARG ASN TRP LEU PRO VAL MET ARG GLY ALA GLU SEQRES 19 A 384 GLU GLY LYS ALA ALA TYR PHE ALA THR PRO PRO VAL HIS SEQRES 20 A 384 VAL ILE LEU GLN LEU ALA GLU ALA PHE ARG LEU ILE GLU SEQRES 21 A 384 LYS GLU GLY ILE GLU ASN ARG ILE LYS ARG HIS THR MET SEQRES 22 A 384 VAL ALA SER ALA ILE ARG ALA GLY LEU GLU ALA LEU GLY SEQRES 23 A 384 LEU GLU ILE VAL ALA ARG ARG PRO GLU SER TYR SER ASN SEQRES 24 A 384 THR VAL THR GLY VAL ILE LEU LYS VAL ALA ASP PRO GLN SEQRES 25 A 384 LYS VAL LEU ALA GLY THR VAL ASN GLU GLY VAL GLU PHE SEQRES 26 A 384 ALA PRO GLY VAL HIS PRO ALA PHE LYS TYR PHE ARG ILE SEQRES 27 A 384 GLY HIS MET GLY TRP VAL THR PRO ASN ASP ALA ILE ILE SEQRES 28 A 384 ALA ILE SER VAL ILE GLU ARG THR LEU ARG LYS LEU GLY SEQRES 29 A 384 GLU PRO ILE ARG PHE GLY GLU GLY VAL LYS ALA VAL GLU SEQRES 30 A 384 GLU VAL LEU PHE SER ALA ARG SEQRES 1 B 384 MET ASP LYS LEU LEU LEU HIS VAL GLY PRO THR THR ILE SEQRES 2 B 384 LYS GLU ASP VAL LEU VAL ALA GLY LEU GLU ASN ASN VAL SEQRES 3 B 384 GLY PHE THR SER LYS GLU PHE VAL GLU ALA LEU ALA TYR SEQRES 4 B 384 SER LEU LYS GLY LEU ARG TYR VAL MET GLY ALA SER LYS SEQRES 5 B 384 ASN TYR GLN PRO LEU ILE ILE PRO GLY GLY GLY THR SER SEQRES 6 B 384 ALA MET GLU SER VAL THR SER LEU LEU LYS PRO ASN ASP SEQRES 7 B 384 LYS ILE LEU VAL VAL SER ASN GLY VAL PHE GLY ASP ARG SEQRES 8 B 384 TRP GLU GLN ILE PHE LYS ARG TYR PRO VAL ASN VAL LYS SEQRES 9 B 384 VAL LEU ARG PRO SER PRO GLY ASP TYR VAL LYS PRO GLY SEQRES 10 B 384 GLU VAL GLU GLU GLU VAL ARG LYS SER GLU TYR LYS LEU SEQRES 11 B 384 VAL ALA LEU THR HIS VAL GLU THR SER THR GLY VAL ARG SEQRES 12 B 384 GLU PRO VAL LYS ASP VAL ILE ASN LYS ILE ARG LYS TYR SEQRES 13 B 384 VAL GLU LEU ILE VAL VAL ASP GLY VAL SER SER VAL GLY SEQRES 14 B 384 ALA GLU GLU VAL LYS ALA GLU GLU TRP ASN VAL ASP VAL SEQRES 15 B 384 TYR LEU THR ALA SER GLN LYS ALA LEU GLY SER ALA ALA SEQRES 16 B 384 GLY LEU GLY LEU LEU LEU LEU SER PRO LYS ALA LEU SER SEQRES 17 B 384 ILE LEU ASP SER GLN ASN SER ILE ALA GLY TYR TYR LEU SEQRES 18 B 384 ASP LEU ARG ASN TRP LEU PRO VAL MET ARG GLY ALA GLU SEQRES 19 B 384 GLU GLY LYS ALA ALA TYR PHE ALA THR PRO PRO VAL HIS SEQRES 20 B 384 VAL ILE LEU GLN LEU ALA GLU ALA PHE ARG LEU ILE GLU SEQRES 21 B 384 LYS GLU GLY ILE GLU ASN ARG ILE LYS ARG HIS THR MET SEQRES 22 B 384 VAL ALA SER ALA ILE ARG ALA GLY LEU GLU ALA LEU GLY SEQRES 23 B 384 LEU GLU ILE VAL ALA ARG ARG PRO GLU SER TYR SER ASN SEQRES 24 B 384 THR VAL THR GLY VAL ILE LEU LYS VAL ALA ASP PRO GLN SEQRES 25 B 384 LYS VAL LEU ALA GLY THR VAL ASN GLU GLY VAL GLU PHE SEQRES 26 B 384 ALA PRO GLY VAL HIS PRO ALA PHE LYS TYR PHE ARG ILE SEQRES 27 B 384 GLY HIS MET GLY TRP VAL THR PRO ASN ASP ALA ILE ILE SEQRES 28 B 384 ALA ILE SER VAL ILE GLU ARG THR LEU ARG LYS LEU GLY SEQRES 29 B 384 GLU PRO ILE ARG PHE GLY GLU GLY VAL LYS ALA VAL GLU SEQRES 30 B 384 GLU VAL LEU PHE SER ALA ARG HET PXG A 470 25 HET CA A1384 1 HET CA A1385 1 HET CA A1386 1 HET PXG B 470 25 HET CA B1384 1 HETNAM PXG 3-[O-PHOSPHONOPYRIDOXYL]--AMINO-BENZOIC ACID HETNAM CA CALCIUM ION FORMUL 3 PXG 2(C15 H17 N2 O7 P) FORMUL 4 CA 4(CA 2+) FORMUL 9 HOH *505(H2 O) HELIX 1 1 LYS A 14 ALA A 20 1 7 HELIX 2 2 SER A 30 GLY A 49 1 20 HELIX 3 3 GLY A 62 SER A 69 1 8 HELIX 4 4 VAL A 70 LEU A 74 5 5 HELIX 5 5 GLY A 86 LYS A 97 1 12 HELIX 6 6 LYS A 115 SER A 126 1 12 HELIX 7 7 PRO A 145 ARG A 154 1 10 HELIX 8 8 SER A 203 GLN A 213 1 11 HELIX 9 9 ASP A 222 GLU A 235 1 14 HELIX 10 10 PRO A 245 GLY A 263 1 19 HELIX 11 11 GLY A 263 LEU A 285 1 23 HELIX 12 12 ARG A 293 SER A 296 5 4 HELIX 13 13 ASP A 310 GLY A 317 1 8 HELIX 14 14 THR A 345 GLY A 364 1 20 HELIX 15 15 GLY A 370 SER A 382 1 13 HELIX 16 16 LYS B 14 ALA B 20 1 7 HELIX 17 17 SER B 30 GLY B 49 1 20 HELIX 18 18 GLY B 62 SER B 69 1 8 HELIX 19 19 VAL B 70 LEU B 74 5 5 HELIX 20 20 GLY B 86 LYS B 97 1 12 HELIX 21 21 LYS B 115 SER B 126 1 12 HELIX 22 22 PRO B 145 ARG B 154 1 10 HELIX 23 23 SER B 203 GLN B 213 1 11 HELIX 24 24 ASP B 222 GLU B 235 1 14 HELIX 25 25 PRO B 245 GLY B 263 1 19 HELIX 26 26 GLY B 263 GLY B 286 1 24 HELIX 27 27 ARG B 293 SER B 296 5 4 HELIX 28 28 ASP B 310 GLY B 317 1 8 HELIX 29 29 THR B 345 GLY B 364 1 20 HELIX 30 30 GLY B 370 SER B 382 1 13 SHEET 1 AA 7 GLN A 55 PRO A 60 0 SHEET 2 AA 7 LEU A 197 LEU A 202 -1 O GLY A 198 N ILE A 59 SHEET 3 AA 7 VAL A 182 ALA A 186 -1 O TYR A 183 N LEU A 201 SHEET 4 AA 7 VAL A 157 ASP A 163 1 O VAL A 162 N LEU A 184 SHEET 5 AA 7 TYR A 128 THR A 134 1 O TYR A 128 N GLU A 158 SHEET 6 AA 7 LYS A 79 VAL A 83 1 O LYS A 79 N LYS A 129 SHEET 7 AA 7 ASN A 102 LEU A 106 1 O ASN A 102 N ILE A 80 SHEET 1 AB 4 GLU A 288 ILE A 289 0 SHEET 2 AB 4 VAL A 301 ILE A 305 -1 O ILE A 305 N GLU A 288 SHEET 3 AB 4 TYR A 335 GLY A 339 -1 O PHE A 336 N VAL A 304 SHEET 4 AB 4 PHE A 325 PRO A 327 -1 O ALA A 326 N ARG A 337 SHEET 1 BA 7 GLN B 55 GLY B 61 0 SHEET 2 BA 7 GLY B 196 LEU B 202 -1 O GLY B 196 N GLY B 61 SHEET 3 BA 7 VAL B 182 ALA B 186 -1 O TYR B 183 N LEU B 201 SHEET 4 BA 7 VAL B 157 ASP B 163 1 O VAL B 162 N LEU B 184 SHEET 5 BA 7 TYR B 128 THR B 134 1 O TYR B 128 N GLU B 158 SHEET 6 BA 7 LYS B 79 VAL B 83 1 O LYS B 79 N LYS B 129 SHEET 7 BA 7 ASN B 102 LEU B 106 1 O ASN B 102 N ILE B 80 SHEET 1 BB 4 GLU B 288 ILE B 289 0 SHEET 2 BB 4 VAL B 301 ILE B 305 -1 O ILE B 305 N GLU B 288 SHEET 3 BB 4 TYR B 335 GLY B 339 -1 O PHE B 336 N VAL B 304 SHEET 4 BB 4 PHE B 325 PRO B 327 -1 O ALA B 326 N ARG B 337 LINK OD1 ASP A 16 CA CA A1384 1555 1555 2.32 LINK OD2 ASP A 16 CA CA A1384 1555 1555 2.75 LINK OE1 GLU A 23 CA CA A1384 2555 1555 2.12 LINK OE2 GLU A 23 CA CA A1384 2555 1555 3.01 LINK OD2 ASP A 148 CA CA A1385 1555 1555 2.76 LINK OD1 ASP A 148 CA CA A1385 1555 1555 2.23 LINK OE2 GLU A 288 CA CA A1386 1555 1555 2.55 LINK OE1 GLU A 288 CA CA A1386 1555 1555 2.80 LINK CA CA A1384 O HOH A2014 1555 1555 2.22 LINK OD2 ASP B 16 CA CA B1384 1555 1555 2.55 LINK OD1 ASP B 16 CA CA B1384 1555 1555 2.38 LINK OE1 GLU B 23 CA CA B1384 2555 1555 2.18 LINK OE2 GLU B 23 CA CA B1384 2555 1555 3.02 LINK CA CA B1384 O HOH B2012 1555 1555 2.42 SITE 1 AC1 18 VAL A 8 GLY A 62 GLY A 63 THR A 64 SITE 2 AC1 18 PHE A 88 VAL A 136 THR A 138 ASP A 163 SITE 3 AC1 18 VAL A 165 SER A 166 GLN A 188 ARG A 337 SITE 4 AC1 18 HOH A2059 HOH A2293 HOH A2294 PHE B 28 SITE 5 AC1 18 TYR B 240 THR B 243 SITE 1 AC2 17 PHE A 28 TYR A 240 ALA A 242 THR A 243 SITE 2 AC2 17 HOH A2211 VAL B 8 GLY B 62 GLY B 63 SITE 3 AC2 17 THR B 64 PHE B 88 VAL B 136 THR B 138 SITE 4 AC2 17 ASP B 163 VAL B 165 SER B 166 GLN B 188 SITE 5 AC2 17 ARG B 337 SITE 1 AC3 3 ASP A 16 GLU A 23 HOH A2014 SITE 1 AC4 3 ASP B 16 GLU B 23 HOH B2012 SITE 1 AC5 2 ASP A 148 LYS B 374 SITE 1 AC6 1 GLU A 288 CRYST1 160.835 55.205 102.320 90.00 111.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006218 0.000000 0.002506 0.00000 SCALE2 0.000000 0.018114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010537 0.00000