HEADER TRANSFERASE 12-JUL-11 3ZTO TITLE ORTHORHOMBIC CRYSTAL FORM C222 OF THE AQUIFEX AEOLICUS NUCLEOSIDE TITLE 2 DIPHOSPHATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NDK, NDP KINASE, NUCLEOSIDE-2-P KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-21A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.BOISSIER,F.GEORGESCAULD,L.MOYNIE,J.-W.DUPUY,C.SARGER,M.PODAR, AUTHOR 2 I.LASCU,M.-F.GIRAUD,A.DAUTANT REVDAT 3 20-DEC-23 3ZTO 1 REMARK REVDAT 2 23-MAY-12 3ZTO 1 JRNL REVDAT 1 14-MAR-12 3ZTO 0 JRNL AUTH F.BOISSIER,F.GEORGESCAULD,L.MOYNIE,J.DUPUY,C.SARGER,M.PODAR, JRNL AUTH 2 I.LASCU,M.GIRAUD,A.DAUTANT JRNL TITL AN INTERSUBUNIT DISULFIDE BRIDGE STABILIZES THE TETRAMERIC JRNL TITL 2 NUCLEOSIDE DIPHOSPHATE KINASE OF AQUIFEX AEOLICUS. JRNL REF PROTEINS V. 80 1658 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22467275 JRNL DOI 10.1002/PROT.24062 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.MOYNIE,M.GIRAUD,F.GEORGESCAULD,I.LASCU,A.DAUTANT REMARK 1 TITL THE STRUCTURE OF THE ESCHERICHIA COLI NUCLEOSIDE DIPHOSPHATE REMARK 1 TITL 2 KINASE REVEALS A NEW QUATERNARY ARCHITECTURE FOR THIS ENZYME REMARK 1 TITL 3 FAMILY. REMARK 1 REF PROTEINS V. 67 755 2007 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 17330300 REMARK 1 DOI 10.1002/PROT.21316 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.L.WILLIAMS,D.A.OREN,J.MUNOZ-DORADO,S.INOUYE,M.INOUYE, REMARK 1 AUTH 2 E.ARNOLD REMARK 1 TITL CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE REMARK 1 TITL 2 DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE REMARK 1 TITL 3 SUBSTRATE AT 2.0 A RESOLUTION. REMARK 1 REF J.MOL.BIOL. V. 234 1230 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 8263923 REMARK 1 DOI 10.1006/JMBI.1993.1673 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 23194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.7638 - 3.0512 0.95 2479 134 0.1519 0.1601 REMARK 3 2 3.0512 - 2.4246 0.98 2464 134 0.1286 0.1781 REMARK 3 3 2.4246 - 2.1190 0.99 2478 121 0.1263 0.1457 REMARK 3 4 2.1190 - 1.9256 0.99 2440 153 0.1253 0.1989 REMARK 3 5 1.9256 - 1.7878 1.00 2440 138 0.1532 0.1575 REMARK 3 6 1.7878 - 1.6825 1.00 2441 124 0.1665 0.2068 REMARK 3 7 1.6825 - 1.5983 1.00 2429 140 0.1761 0.2344 REMARK 3 8 1.5983 - 1.5288 1.00 2450 126 0.2110 0.2369 REMARK 3 9 1.5288 - 1.4700 0.97 2376 127 0.2642 0.2719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.41 REMARK 3 K_SOL : 0.50 REMARK 3 B_SOL : 59.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.00350 REMARK 3 B22 (A**2) : -0.18470 REMARK 3 B33 (A**2) : -3.81880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1195 REMARK 3 ANGLE : 1.216 1616 REMARK 3 CHIRALITY : 0.072 175 REMARK 3 PLANARITY : 0.007 212 REMARK 3 DIHEDRAL : 13.536 464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESSEQ 2:51 OR RESSEQ 58:142)) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9539 -10.5399 -15.5561 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0806 REMARK 3 T33: 0.0797 T12: -0.0002 REMARK 3 T13: 0.0009 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.3961 L22: 0.4918 REMARK 3 L33: 0.9919 L12: -0.2819 REMARK 3 L13: 0.1194 L23: 0.1347 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0121 S13: -0.0293 REMARK 3 S21: -0.0633 S22: 0.0012 S23: -0.0415 REMARK 3 S31: 0.1023 S32: 0.0913 S33: -0.0294 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 52:57) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9152 -19.9564 -5.2304 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.1776 REMARK 3 T33: 0.1947 T12: 0.0636 REMARK 3 T13: -0.0198 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.3722 L22: 0.3924 REMARK 3 L33: 0.6787 L12: -0.3141 REMARK 3 L13: 0.1541 L23: 0.1421 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0080 S13: -0.0020 REMARK 3 S21: 0.0640 S22: 0.1255 S23: -0.0458 REMARK 3 S31: 0.1883 S32: 0.1218 S33: -0.0680 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN THE SSBOND CARDS: THE FIRST ATOM REMARK 3 BELONGS TO THE ALTERNATE CONFORMER A (WITH OCCUPANCY Q1). THE REMARK 3 SECOND ONE BELONGS TO THE ALTERNATE CONFORMER B (WITH OCCUPANCY REMARK 3 Q2). ABS(Q1 - Q2)*100 IS THE PERCENTAGE OF CYS133 NOT INVOLVED REMARK 3 IN THE DISULFIDE BRIDGE. REMARK 4 REMARK 4 3ZTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290045677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : KIRKPATRICK BAEZ REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 15.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1NLK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M LISO4, 0.1 M BIS REMARK 280 -TRIS PH 5.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.56500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.53000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.56500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.56500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.53000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.56500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.53000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2005 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2050 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2061 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2062 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2118 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2152 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 -148.90 -147.86 REMARK 500 ALA A 118 -38.83 70.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 7.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZTP RELATED DB: PDB REMARK 900 ORTHORHOMBIC CRYSTAL FORM P21212 OF THE AQUIFEX AEOLICUS NUCLEOSIDE REMARK 900 DIPHOSPHATE KINASE REMARK 900 RELATED ID: 3ZTS RELATED DB: PDB REMARK 900 HEXAGONAL FORM P6122 OF THE AQUIFEX AEOLICUS NUCLEOSIDE DIPHOSPHATE REMARK 900 KINASE (FINAL STAGE OF RADIATION DAMAGE) REMARK 900 RELATED ID: 3ZTR RELATED DB: PDB REMARK 900 HEXAGONAL FORM P6122 OF THE AQUIFEX AEOLICUS NUCLEOSIDE DIPHOSPHATE REMARK 900 KINASE (FIRST STAGE OF RADIATION DAMAGE) REMARK 900 RELATED ID: 3ZTQ RELATED DB: PDB REMARK 900 HEXAGONAL CRYSTAL FORM P61 OF THE AQUIFEX AEOLICUS NUCLEOSIDE REMARK 900 DIPHOSPHATE KINASE DBREF 3ZTO A 1 142 UNP O67528 NDK_AQUAE 1 142 SEQRES 1 A 142 MET ALA VAL GLU ARG THR LEU ILE ILE VAL LYS PRO ASP SEQRES 2 A 142 ALA MET GLU LYS GLY ALA LEU GLY LYS ILE LEU ASP ARG SEQRES 3 A 142 PHE ILE GLN GLU GLY PHE GLN ILE LYS ALA LEU LYS MET SEQRES 4 A 142 PHE ARG PHE THR PRO GLU LYS ALA GLY GLU PHE TYR TYR SEQRES 5 A 142 VAL HIS ARG GLU ARG PRO PHE PHE GLN GLU LEU VAL GLU SEQRES 6 A 142 PHE MET SER SER GLY PRO VAL VAL ALA ALA VAL LEU GLU SEQRES 7 A 142 GLY GLU ASP ALA ILE LYS ARG VAL ARG GLU ILE ILE GLY SEQRES 8 A 142 PRO THR ASP SER GLU GLU ALA ARG LYS VAL ALA PRO ASN SEQRES 9 A 142 SER ILE ARG ALA GLN PHE GLY THR ASP LYS GLY LYS ASN SEQRES 10 A 142 ALA ILE HIS ALA SER ASP SER PRO GLU SER ALA GLN TYR SEQRES 11 A 142 GLU ILE CYS PHE ILE PHE SER GLY LEU GLU ILE VAL HET SO4 A 200 5 HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *184(H2 O) HELIX 1 1 LYS A 11 GLY A 18 1 8 HELIX 2 2 ALA A 19 GLU A 30 1 12 HELIX 3 3 THR A 43 TYR A 51 1 9 HELIX 4 4 TYR A 52 ARG A 55 5 4 HELIX 5 5 PHE A 59 SER A 68 1 10 HELIX 6 6 ASP A 81 GLY A 91 1 11 HELIX 7 7 ASP A 94 ALA A 102 1 9 HELIX 8 8 SER A 105 GLY A 111 1 7 HELIX 9 9 SER A 124 PHE A 136 1 13 HELIX 10 10 SER A 137 ILE A 141 5 5 SHEET 1 AA 4 GLN A 33 PHE A 40 0 SHEET 2 AA 4 VAL A 72 GLU A 80 -1 O VAL A 72 N PHE A 40 SHEET 3 AA 4 VAL A 3 VAL A 10 -1 O GLU A 4 N GLY A 79 SHEET 4 AA 4 ILE A 119 ALA A 121 -1 O HIS A 120 N ILE A 9 SSBOND 1 CYS A 133 CYS A 133 1555 3555 2.86 SITE 1 AC1 8 LYS A 11 TYR A 51 HIS A 120 HOH A2115 SITE 2 AC1 8 HOH A2153 HOH A2154 HOH A2184 HOH A2185 SITE 1 AC2 6 ARG A 87 THR A 93 ARG A 107 HOH A2139 SITE 2 AC2 6 HOH A2153 HOH A2154 CRYST1 43.130 101.060 62.040 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016119 0.00000