HEADER HYDROLASE 12-JUL-11 3ZTY TITLE THE 3-DIMENSIONAL STRUCTURE OF THE GADOLINIUM DERIVATIVE OF MPGP, THE TITLE 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS TITLE 3 HB27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PKK223-3 KEYWDS HYDROLASE, HALOALKANOID ACID DEHALOGENASE-LIKE PHOSPHATASE, HAD-LIKE KEYWDS 2 PHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS REVDAT 4 08-MAY-24 3ZTY 1 REMARK LINK REVDAT 3 05-JUL-17 3ZTY 1 REMARK REVDAT 2 09-NOV-11 3ZTY 1 JRNL REVDAT 1 19-OCT-11 3ZTY 0 JRNL AUTH S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF JRNL TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB27: A NEW MEMBER OF THE HALOALKANOIC ACID JRNL TITL 4 DEHALOGENASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 50 9551 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21961705 JRNL DOI 10.1021/BI201171H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GONCALVES,A.M.ESTEVES,N.BORGES,H.SANTOS,P.M.MATIAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB27. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 390 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21393850 REMARK 1 DOI 10.1107/S1744309111002843 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5657 - 4.5407 0.99 2851 160 0.1832 0.2127 REMARK 3 2 4.5407 - 3.6051 1.00 2807 167 0.1732 0.2477 REMARK 3 3 3.6051 - 3.1496 1.00 2830 147 0.1953 0.2606 REMARK 3 4 3.1496 - 2.8618 1.00 2823 140 0.2175 0.2771 REMARK 3 5 2.8618 - 2.6567 1.00 2798 154 0.2236 0.3066 REMARK 3 6 2.6567 - 2.5001 1.00 2817 140 0.2285 0.2828 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 34.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.26940 REMARK 3 B22 (A**2) : -2.12670 REMARK 3 B33 (A**2) : -2.14260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.41070 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3984 REMARK 3 ANGLE : 1.120 5420 REMARK 3 CHIRALITY : 0.066 588 REMARK 3 PLANARITY : 0.005 724 REMARK 3 DIHEDRAL : 15.686 1514 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:29) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8979 49.7695 -16.4032 REMARK 3 T TENSOR REMARK 3 T11: 0.7198 T22: 0.3661 REMARK 3 T33: 0.5575 T12: 0.1355 REMARK 3 T13: -0.0767 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.0265 L22: 0.7152 REMARK 3 L33: 0.5679 L12: -0.1040 REMARK 3 L13: 0.6573 L23: 0.3974 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: -0.3256 S13: -0.7378 REMARK 3 S21: -0.4930 S22: 0.2262 S23: -0.2017 REMARK 3 S31: 1.5132 S32: 0.4460 S33: 0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 30:132) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4925 61.5956 -0.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.2367 REMARK 3 T33: 0.2206 T12: 0.0074 REMARK 3 T13: -0.0336 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.5429 L22: 2.1840 REMARK 3 L33: 3.6972 L12: 0.5593 REMARK 3 L13: -1.3430 L23: -1.2246 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.1546 S13: 0.0167 REMARK 3 S21: -0.0073 S22: -0.1395 S23: -0.1904 REMARK 3 S31: 0.0552 S32: 0.1172 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 133:175) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5287 62.5760 2.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.3931 REMARK 3 T33: 0.3676 T12: 0.0453 REMARK 3 T13: -0.0316 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.2082 L22: 1.4877 REMARK 3 L33: 2.5985 L12: -1.7750 REMARK 3 L13: 0.2127 L23: -0.3514 REMARK 3 S TENSOR REMARK 3 S11: 0.1888 S12: 0.3159 S13: -0.3766 REMARK 3 S21: -0.2194 S22: 0.0676 S23: 0.5640 REMARK 3 S31: 0.0166 S32: -0.6882 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 176:251) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4474 59.0043 -20.7725 REMARK 3 T TENSOR REMARK 3 T11: 0.3928 T22: 0.2909 REMARK 3 T33: 0.4253 T12: -0.1016 REMARK 3 T13: -0.0851 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.5903 L22: 3.4921 REMARK 3 L33: 2.7826 L12: -1.5869 REMARK 3 L13: 1.7851 L23: -1.0190 REMARK 3 S TENSOR REMARK 3 S11: 0.1034 S12: 0.1917 S13: -0.6806 REMARK 3 S21: -0.8181 S22: 0.1534 S23: 0.4759 REMARK 3 S31: 0.6261 S32: -0.3295 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:29) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7212 59.8485 45.5720 REMARK 3 T TENSOR REMARK 3 T11: 0.7691 T22: 0.3617 REMARK 3 T33: 0.4237 T12: -0.1122 REMARK 3 T13: 0.0088 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.3903 L22: 0.7904 REMARK 3 L33: 0.4224 L12: -0.5886 REMARK 3 L13: 0.1716 L23: 0.4442 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: 0.1333 S13: 0.4895 REMARK 3 S21: 0.7139 S22: -0.0646 S23: -0.2135 REMARK 3 S31: -1.4023 S32: 0.2540 S33: -0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 30:83) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3961 46.9044 43.0672 REMARK 3 T TENSOR REMARK 3 T11: 0.5487 T22: 0.3771 REMARK 3 T33: 0.2884 T12: 0.0251 REMARK 3 T13: -0.0850 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.0354 L22: 1.8914 REMARK 3 L33: 1.4863 L12: 1.3584 REMARK 3 L13: 0.1945 L23: 0.1752 REMARK 3 S TENSOR REMARK 3 S11: 0.1490 S12: -0.3866 S13: -0.1733 REMARK 3 S21: 0.7884 S22: -0.0349 S23: -0.6563 REMARK 3 S31: 0.1594 S32: 0.5774 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 84:176) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3680 48.2057 21.6996 REMARK 3 T TENSOR REMARK 3 T11: 0.1434 T22: 0.2191 REMARK 3 T33: 0.2149 T12: 0.0225 REMARK 3 T13: 0.0126 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.7413 L22: 3.7839 REMARK 3 L33: 3.7359 L12: 1.8928 REMARK 3 L13: 0.1876 L23: 0.5777 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0089 S13: 0.1292 REMARK 3 S21: -0.0199 S22: 0.0118 S23: 0.2104 REMARK 3 S31: -0.1527 S32: 0.0402 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 177:251) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8751 50.9990 45.6367 REMARK 3 T TENSOR REMARK 3 T11: 0.5707 T22: 0.4045 REMARK 3 T33: 0.2893 T12: -0.0430 REMARK 3 T13: 0.0871 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 3.1303 L22: 2.3905 REMARK 3 L33: 2.2848 L12: 0.6980 REMARK 3 L13: 0.0191 L23: -0.3555 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: -0.0568 S13: 0.1636 REMARK 3 S21: 0.5562 S22: 0.1040 S23: 0.6292 REMARK 3 S31: 0.1207 S32: -0.6161 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MONTEL MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17882 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX CDE, AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REMARK 1 REFERENCE ABOVE., PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.41750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 253 REMARK 465 ARG A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 ARG B 253 REMARK 465 ARG B 254 REMARK 465 GLY B 255 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 PRO B 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 252 CA C O CB OG REMARK 470 SER B 252 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -81.99 -103.33 REMARK 500 THR A 10 -81.21 -123.52 REMARK 500 TYR A 137 -48.55 -134.37 REMARK 500 PRO A 145 -35.31 -38.89 REMARK 500 ARG A 167 -90.70 -129.92 REMARK 500 ASP A 202 -12.00 -143.63 REMARK 500 LEU A 251 -115.16 -74.28 REMARK 500 LEU B 7 -86.47 -97.04 REMARK 500 THR B 10 -82.01 -116.96 REMARK 500 PRO B 20 39.51 -83.61 REMARK 500 TYR B 89 -60.16 -23.94 REMARK 500 TYR B 137 -47.76 -136.83 REMARK 500 ARG B 167 -72.28 -111.45 REMARK 500 ASP B 202 -27.06 -146.31 REMARK 500 SER B 203 -166.45 -121.66 REMARK 500 ASN B 205 21.24 -76.01 REMARK 500 LEU B 247 -71.11 -91.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2034 DISTANCE = 5.90 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GADOLINIUM (III) (GD): FROM GDCL3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 261 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD2 REMARK 620 2 ASP A 8 O 74.8 REMARK 620 3 ASP A 202 OD1 73.4 106.0 REMARK 620 4 ASP A 202 OD2 65.1 58.1 47.9 REMARK 620 5 HOH A2003 O 61.1 135.6 57.8 95.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 262 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 14 OE2 REMARK 620 2 HOH A2089 O 108.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 263 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 165 O REMARK 620 2 HOH A2006 O 120.0 REMARK 620 3 HOH A2007 O 138.3 85.1 REMARK 620 4 HOH A2072 O 70.6 99.2 72.9 REMARK 620 5 HOH A2089 O 75.5 162.7 77.8 78.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD B 261 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD2 REMARK 620 2 ASP B 6 OD1 39.3 REMARK 620 3 ASP B 8 O 73.2 84.7 REMARK 620 4 ASP B 202 OD1 67.7 103.7 94.9 REMARK 620 5 ASP B 202 OD2 80.9 117.6 56.1 45.6 REMARK 620 6 HOH B2002 O 71.0 64.9 144.0 75.4 120.8 REMARK 620 7 HOH B2050 O 129.7 95.2 136.0 127.2 147.1 69.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD B 263 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 14 OE2 REMARK 620 2 ASP B 202 OD2 102.2 REMARK 620 3 HOH B2043 O 134.1 110.3 REMARK 620 4 HOH B2057 O 80.9 172.9 70.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD B 262 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 165 O REMARK 620 2 HOH B2003 O 134.7 REMARK 620 3 HOH B2050 O 82.7 52.7 REMARK 620 4 HOH B2057 O 73.7 150.5 156.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD B 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GD B 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZUP RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZWK RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE METAVANADATE REMARK 900 RELATED ID: 3ZTW RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF APO-MPGP, THE MANNOSYL -3- REMARK 900 PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS HB27 IN ITS REMARK 900 APO-FORM REMARK 900 RELATED ID: 3ZU6 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZX5 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 COVALENTLY BOUND TO VANADATE AND IN COMPLEX WITH ALPHA- REMARK 900 MANNOSYLGLYCERATE AND MAGNESIUM REMARK 900 RELATED ID: 3ZW7 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND METAPHOSPHATE. REMARK 900 RELATED ID: 3ZWD RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE. REMARK 900 RELATED ID: 3ZX4 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE,ORTHOPHOSPHATE AND REMARK 900 MAGNESIUM DBREF 3ZTY A 1 259 UNP Q72K29 Q72K29_THET2 1 259 DBREF 3ZTY B 1 259 UNP Q72K29 Q72K29_THET2 1 259 SEQRES 1 A 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 A 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 A 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 A 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 A 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 A 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 A 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 A 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 A 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 A 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 A 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 A 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 A 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 A 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 A 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 A 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 A 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 A 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 A 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 A 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO SEQRES 1 B 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 B 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 B 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 B 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 B 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 B 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 B 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 B 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 B 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 B 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 B 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 B 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 B 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 B 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 B 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 B 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 B 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 B 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 B 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 B 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO HET GD A 261 1 HET GD A 262 1 HET GD A 263 1 HET CL A 264 1 HET GD B 261 1 HET GD B 262 1 HET GD B 263 1 HET CL B 264 1 HETNAM GD GADOLINIUM ATOM HETNAM CL CHLORIDE ION FORMUL 3 GD 6(GD) FORMUL 6 CL 2(CL 1-) FORMUL 11 HOH *146(H2 O) HELIX 1 1 PRO A 20 LEU A 31 1 12 HELIX 2 2 THR A 42 LEU A 49 1 8 HELIX 3 3 GLU A 58 GLY A 60 5 3 HELIX 4 4 PRO A 88 GLY A 104 1 17 HELIX 5 5 TYR A 110 ASP A 112 5 3 HELIX 6 6 THR A 114 GLY A 123 1 10 HELIX 7 7 SER A 125 ALA A 134 1 10 HELIX 8 8 GLU A 147 VAL A 158 1 12 HELIX 9 9 ASP A 176 LEU A 187 1 12 HELIX 10 10 ASP A 190 ARG A 195 1 6 HELIX 11 11 SER A 203 ASN A 205 5 3 HELIX 12 12 ASP A 206 ALA A 212 1 7 HELIX 13 13 GLY A 235 TYR A 246 1 12 HELIX 14 14 LEU B 7 LEU B 12 1 6 HELIX 15 15 LEU B 18 PRO B 20 5 3 HELIX 16 16 ALA B 21 LEU B 31 1 11 HELIX 17 17 THR B 42 LEU B 49 1 8 HELIX 18 18 GLU B 58 GLY B 60 5 3 HELIX 19 19 PRO B 88 GLY B 104 1 17 HELIX 20 20 THR B 114 GLY B 123 1 10 HELIX 21 21 SER B 125 ALA B 134 1 10 HELIX 22 22 CYS B 144 GLU B 146 5 3 HELIX 23 23 GLU B 147 VAL B 158 1 12 HELIX 24 24 ASP B 176 LEU B 187 1 12 HELIX 25 25 SER B 203 ASN B 205 5 3 HELIX 26 26 ASP B 206 ALA B 212 1 7 HELIX 27 27 PRO B 234 LEU B 251 1 18 SHEET 1 AA 5 VAL A 35 PRO A 37 0 SHEET 2 AA 5 ILE A 2 THR A 5 1 O VAL A 3 N VAL A 36 SHEET 3 AA 5 ALA A 197 GLY A 201 1 O VAL A 198 N PHE A 4 SHEET 4 AA 5 LEU A 215 TYR A 218 1 O LEU A 215 N GLY A 199 SHEET 5 AA 5 LEU A 229 ALA A 230 1 O LEU A 229 N TYR A 218 SHEET 1 AB 4 PHE A 55 VAL A 57 0 SHEET 2 AB 4 GLY A 62 PRO A 66 -1 O GLY A 62 N VAL A 57 SHEET 3 AB 4 TYR A 80 SER A 84 -1 O ARG A 81 N LEU A 65 SHEET 4 AB 4 ARG A 75 LYS A 77 -1 O ARG A 75 N VAL A 82 SHEET 1 AC 3 GLU A 139 THR A 140 0 SHEET 2 AC 3 TYR A 169 ALA A 172 -1 O ALA A 171 N GLU A 139 SHEET 3 AC 3 GLU A 161 HIS A 164 -1 O GLU A 161 N ALA A 172 SHEET 1 BA 5 VAL B 35 PRO B 37 0 SHEET 2 BA 5 ILE B 2 THR B 5 1 O VAL B 3 N VAL B 36 SHEET 3 BA 5 ALA B 197 GLY B 201 1 O VAL B 198 N PHE B 4 SHEET 4 BA 5 LEU B 215 TYR B 218 1 O LEU B 215 N GLY B 199 SHEET 5 BA 5 LEU B 229 ALA B 230 1 O LEU B 229 N TYR B 218 SHEET 1 BB 4 PHE B 55 VAL B 57 0 SHEET 2 BB 4 GLY B 62 PRO B 66 -1 O GLY B 62 N VAL B 57 SHEET 3 BB 4 TYR B 80 SER B 84 -1 O ARG B 81 N LEU B 65 SHEET 4 BB 4 ARG B 75 PRO B 76 -1 O ARG B 75 N VAL B 82 SHEET 1 BC 4 LEU B 108 GLY B 109 0 SHEET 2 BC 4 GLU B 139 VAL B 142 -1 O VAL B 142 N LEU B 108 SHEET 3 BC 4 TYR B 169 ALA B 172 -1 O TYR B 169 N LEU B 141 SHEET 4 BC 4 GLU B 161 HIS B 164 -1 O GLU B 161 N ALA B 172 LINK OD2 ASP A 6 GD GD A 261 1555 1555 2.53 LINK O ASP A 8 GD GD A 261 1555 1555 2.41 LINK OE2 GLU A 14 GD GD A 262 1555 1555 2.83 LINK O GLY A 165 GD GD A 263 1555 1555 2.58 LINK OD1 ASP A 202 GD GD A 261 1555 1555 2.70 LINK OD2 ASP A 202 GD GD A 261 1555 1555 2.61 LINK GD GD A 261 O HOH A2003 1555 1555 3.05 LINK GD GD A 262 O HOH A2089 1555 1555 3.17 LINK GD GD A 263 O HOH A2006 1555 1555 3.47 LINK GD GD A 263 O HOH A2007 1555 1555 3.20 LINK GD GD A 263 O HOH A2072 1555 1555 3.36 LINK GD GD A 263 O HOH A2089 1555 1555 3.36 LINK OD2 ASP B 6 GD GD B 261 1555 1555 2.51 LINK OD1 ASP B 6 GD GD B 261 1555 1555 3.46 LINK O ASP B 8 GD GD B 261 1555 1555 2.66 LINK OE2 GLU B 14 GD GD B 263 1555 1555 2.57 LINK O GLY B 165 GD GD B 262 1555 1555 2.79 LINK OD1 ASP B 202 GD GD B 261 1555 1555 2.27 LINK OD2 ASP B 202 GD GD B 261 1555 1555 3.06 LINK OD2 ASP B 202 GD GD B 263 1555 1555 2.84 LINK GD GD B 261 O HOH B2002 1555 1555 2.43 LINK GD GD B 261 O HOH B2050 1555 1555 3.45 LINK GD GD B 262 O HOH B2003 1555 1555 3.11 LINK GD GD B 262 O HOH B2050 1555 1555 3.08 LINK GD GD B 262 O HOH B2057 1555 1555 3.45 LINK GD GD B 263 O HOH B2043 1555 1555 2.89 LINK GD GD B 263 O HOH B2057 1555 1555 3.43 CISPEP 1 PRO A 53 PRO A 54 0 5.76 CISPEP 2 PRO B 53 PRO B 54 0 5.34 SITE 1 AC1 4 ASP A 6 ASP A 8 ASP A 202 HOH A2003 SITE 1 AC2 2 GLU A 14 GD A 263 SITE 1 AC3 2 GLY A 165 GD A 262 SITE 1 AC4 4 ASP A 6 ASP A 8 THR A 39 HOH A2004 SITE 1 AC5 5 ASP B 6 ASP B 8 ASP B 202 CL B 264 SITE 2 AC5 5 HOH B2002 SITE 1 AC6 3 GLY B 165 GD B 263 HOH B2050 SITE 1 AC7 5 GLU B 14 ASP B 202 SER B 203 GD B 262 SITE 2 AC7 5 HOH B2043 SITE 1 AC8 6 ASP B 6 ASP B 8 THR B 39 GD B 261 SITE 2 AC8 6 HOH B2001 HOH B2003 CRYST1 39.692 70.835 92.735 90.00 95.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025194 0.000000 0.002222 0.00000 SCALE2 0.000000 0.014117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010825 0.00000