HEADER CRYSTALLINE CELLULOSE-BINDING PROTEIN 18-JUL-11 3ZUC TITLE STRUCTURE OF CBM3B OF MAJOR SCAFFOLDIN SUBUNIT SCAA FROM ACETIVIBRIO TITLE 2 CELLULOLYTICUS DETERMINED FROM THE CRYSTALS GROWN IN THE PRESENCE OF TITLE 3 NICKEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSOMAL SCAFFOLDIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 973-1121; COMPND 5 SYNONYM: FAMILY 3B CARBOHYDRATE BINDING MODULE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETIVIBRIO CELLULOLYTICUS; SOURCE 3 ORGANISM_TAXID: 35830; SOURCE 4 ATCC: 33288; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS CRYSTALLINE CELLULOSE-BINDING PROTEIN, SUGAR BINDING PROTEIN, KEYWDS 2 CELLULOSOME EXPDTA X-RAY DIFFRACTION AUTHOR O.YANIV,Y.HALFON,R.LAMED,F.FROLOW REVDAT 4 20-DEC-23 3ZUC 1 REMARK LINK ATOM REVDAT 3 29-MAR-17 3ZUC 1 TITLE REVDAT 2 11-APR-12 3ZUC 1 JRNL REVDAT 1 11-JAN-12 3ZUC 0 JRNL AUTH O.YANIV,Y.HALFON,L.J.W.SHIMON,E.A.BAYER,R.LAMED,F.FROLOW JRNL TITL STRUCTURE OF CBM3B OF THE MAJOR SCAFFOLDIN SUBUNIT SCAA FROM JRNL TITL 2 ACETIVIBRIO CELLULOLYTICUS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 8 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22232162 JRNL DOI 10.1107/S174430911104807X REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 159400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.300 REMARK 3 FREE R VALUE TEST SET COUNT : 3719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4700 - 3.0029 1.00 5896 141 0.1590 0.1493 REMARK 3 2 3.0029 - 2.3835 1.00 5861 146 0.1375 0.1621 REMARK 3 3 2.3835 - 2.0822 1.00 5871 135 0.1174 0.1103 REMARK 3 4 2.0822 - 1.8919 1.00 5890 136 0.1049 0.1310 REMARK 3 5 1.8919 - 1.7563 1.00 5850 140 0.1031 0.1159 REMARK 3 6 1.7563 - 1.6527 1.00 5883 143 0.1000 0.1053 REMARK 3 7 1.6527 - 1.5699 1.00 5911 138 0.0929 0.1212 REMARK 3 8 1.5699 - 1.5016 1.00 5823 139 0.0938 0.1188 REMARK 3 9 1.5016 - 1.4438 1.00 5942 139 0.0928 0.1110 REMARK 3 10 1.4438 - 1.3940 1.00 5848 137 0.0956 0.1043 REMARK 3 11 1.3940 - 1.3504 1.00 5850 138 0.0975 0.1044 REMARK 3 12 1.3504 - 1.3118 1.00 5904 144 0.0988 0.1164 REMARK 3 13 1.3118 - 1.2772 1.00 5886 141 0.1001 0.1265 REMARK 3 14 1.2772 - 1.2461 1.00 5857 143 0.1010 0.1054 REMARK 3 15 1.2461 - 1.2177 1.00 5850 140 0.1004 0.1172 REMARK 3 16 1.2177 - 1.1918 1.00 5854 144 0.1025 0.1199 REMARK 3 17 1.1918 - 1.1680 1.00 5844 144 0.1016 0.1307 REMARK 3 18 1.1680 - 1.1459 1.00 5839 142 0.1066 0.1204 REMARK 3 19 1.1459 - 1.1255 0.99 5866 135 0.1088 0.1357 REMARK 3 20 1.1255 - 1.1064 0.99 5852 136 0.1211 0.1471 REMARK 3 21 1.1064 - 1.0885 0.99 5806 137 0.1306 0.1426 REMARK 3 22 1.0885 - 1.0718 0.99 5796 138 0.1483 0.1698 REMARK 3 23 1.0718 - 1.0560 0.99 5816 141 0.1878 0.1812 REMARK 3 24 1.0560 - 1.0411 0.96 5677 135 0.2206 0.2439 REMARK 3 25 1.0411 - 1.0271 0.93 5454 134 0.2569 0.2818 REMARK 3 26 1.0271 - 1.0137 0.88 5144 121 0.2981 0.2730 REMARK 3 27 1.0137 - 1.0011 0.77 4611 112 0.3467 0.3591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.45 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.50 REMARK 3 B_SOL : 75.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : -1.41000 REMARK 3 B33 (A**2) : 2.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1369 REMARK 3 ANGLE : 1.402 1877 REMARK 3 CHIRALITY : 0.101 195 REMARK 3 PLANARITY : 0.009 249 REMARK 3 DIHEDRAL : 14.715 479 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 159400 REFLECTIONS USED IN REFINEMENT REMARK 3 USING SEPARATED FRIEDEL PAIRS REMARK 4 REMARK 4 3ZUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290049049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI(311) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87445 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ZQW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M AMMONIUM SULFATE,0.1 M HEPES PH REMARK 280 7.5 0.5% (W/V) POLYETHYLENE GLYCOL 400 0.2M NICKEL CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.71967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 129.43933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.07950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 161.79917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.35983 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.71967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 129.43933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 161.79917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.07950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.35983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2311 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2010 O HOH A 2011 1.77 REMARK 500 OD1 ASN A 77 O HOH A 2209 1.86 REMARK 500 OG1 THR A 132 O HOH A 2285 1.98 REMARK 500 O HOH A 2158 O HOH A 2160 1.99 REMARK 500 O HOH A 2014 O HOH A 2017 2.02 REMARK 500 OG SER A 135 O HOH A 2034 2.02 REMARK 500 O HOH A 2139 O HOH A 2140 2.04 REMARK 500 O HOH A 2153 O HOH A 2162 2.07 REMARK 500 O HOH A 2042 O HOH A 2043 2.07 REMARK 500 O HOH A 2285 O HOH A 2288 2.08 REMARK 500 O HOH A 2071 O HOH A 2263 2.08 REMARK 500 O HIS A 3 O HOH A 2017 2.12 REMARK 500 O HOH A 2080 O HOH A 2081 2.14 REMARK 500 O HOH A 2153 O HOH A 2164 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2054 O HOH A 2054 8675 1.79 REMARK 500 O HOH A 2168 O HOH A 2208 12575 1.83 REMARK 500 O HOH A 2218 O HOH A 2218 12575 1.90 REMARK 500 O HOH A 2213 O HOH A 2301 8675 2.00 REMARK 500 O HOH A 2239 O HOH A 2286 8665 2.07 REMARK 500 O HOH A 2068 O HOH A 2207 12575 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 1.48 -171.98 REMARK 500 ARG A 109 142.62 -173.20 REMARK 500 SER A 143 -168.56 -114.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 108 ARG A 109 -147.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2127 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A2128 DISTANCE = 6.71 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 NICKEL (II) ION (NI): CRYSTALS WERE GROWN IN THE PRESENCE REMARK 600 OF NICKEL IONS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1154 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 48 O REMARK 620 2 THR A 48 OG1 71.6 REMARK 620 3 ASP A 50 OD2 82.0 99.2 REMARK 620 4 ASN A 119 O 141.6 146.6 85.8 REMARK 620 5 ASP A 122 OD1 144.6 73.5 109.4 73.7 REMARK 620 6 ASP A 123 OD1 86.9 86.6 165.1 96.9 85.4 REMARK 620 7 HOH A2152 O 69.0 138.0 89.1 74.6 141.6 77.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZQW RELATED DB: PDB REMARK 900 STRUCTURE OF CBM3B OF MAJOR SCAFFOLDIN SUBUNIT SCAA FROM REMARK 900 ACETIVIBRIO CELLULOLYTICUS REMARK 900 RELATED ID: 3ZU8 RELATED DB: PDB REMARK 900 STRUCTURE OF CBM3B OF MAJOR SCAFFOLDIN SUBUNIT SCAA FROM REMARK 900 ACETIVIBRIO CELLULOLYTICUS DETERMINED ON THE NIKEL ABSORPTION EDGE DBREF 3ZUC A 5 153 UNP Q9RPL0 Q9RPL0_9FIRM 973 1121 SEQADV 3ZUC GLY A 1 UNP Q9RPL0 EXPRESSION TAG SEQADV 3ZUC SER A 2 UNP Q9RPL0 EXPRESSION TAG SEQADV 3ZUC HIS A 3 UNP Q9RPL0 EXPRESSION TAG SEQADV 3ZUC MET A 4 UNP Q9RPL0 EXPRESSION TAG SEQRES 1 A 153 GLY SER HIS MET ASN LEU LYS VAL GLU PHE PHE ASN ALA SEQRES 2 A 153 GLY THR GLN ALA GLN SER ASN SER ILE TYR PRO LYS PHE SEQRES 3 A 153 ARG LEU THR ASN THR GLY SER ASN ALA ILE ASN LEU ALA SEQRES 4 A 153 ASP VAL LYS LEU HIS TYR TYR PHE THR VAL ASP GLY ASP SEQRES 5 A 153 LYS ALA GLN THR PHE TRP CYS ASP TRP SER PRO VAL GLY SEQRES 6 A 153 SER SER ASN VAL THR GLY THR PHE VAL LYS MET ASN PRO SEQRES 7 A 153 THR THR THR GLY ALA ASP GLN TYR LEU GLU ILE ALA PHE SEQRES 8 A 153 SER SER ALA ALA GLY THR LEU ALA ALA ASN THR SER ILE SEQRES 9 A 153 GLU VAL GLN GLY ARG PHE ALA LYS SER ASP TRP THR ASN SEQRES 10 A 153 TYR ASN GLN ALA ASP ASP TYR SER PHE ASN SER SER ALA SEQRES 11 A 153 THR THR TYR THR SER TRP ASP LYS VAL THR ALA TYR SER SEQRES 12 A 153 ALA GLU GLY LEU ILE TRP GLY ILE GLU PRO HET CA A1154 1 HET EDO A1155 20 HET NI A1156 1 HET 1PE A1157 38 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NI NICKEL (II) ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 CA CA 2+ FORMUL 3 EDO C2 H6 O2 FORMUL 4 NI NI 2+ FORMUL 5 1PE C10 H22 O6 FORMUL 6 HOH *311(H2 O) HELIX 1 1 GLY A 65 SER A 67 5 3 HELIX 2 2 SER A 93 ALA A 95 5 3 HELIX 3 3 ALA A 121 ASP A 123 5 3 SHEET 1 AA 5 GLN A 55 TRP A 61 0 SHEET 2 AA 5 THR A 102 LYS A 112 -1 O GLN A 107 N ASP A 60 SHEET 3 AA 5 PRO A 24 ASN A 30 -1 O PRO A 24 N GLY A 108 SHEET 4 AA 5 LEU A 6 ASN A 12 -1 O LYS A 7 N THR A 29 SHEET 5 AA 5 THR A 134 SER A 135 -1 O THR A 134 N PHE A 10 SHEET 1 AB 2 GLN A 18 SER A 19 0 SHEET 2 AB 2 TYR A 118 ASN A 119 -1 O TYR A 118 N SER A 19 SHEET 1 AC 2 ILE A 36 ASN A 37 0 SHEET 2 AC 2 THR A 97 LEU A 98 -1 O LEU A 98 N ILE A 36 SHEET 1 AD 5 VAL A 69 THR A 80 0 SHEET 2 AD 5 ALA A 83 PHE A 91 -1 O ALA A 83 N THR A 80 SHEET 3 AD 5 LYS A 42 PHE A 47 -1 O LEU A 43 N ILE A 89 SHEET 4 AD 5 THR A 140 SER A 143 -1 O THR A 140 N HIS A 44 SHEET 5 AD 5 GLY A 146 TRP A 149 -1 O GLY A 146 N SER A 143 LINK ND1 HIS A 3 NI NI A1156 1555 1555 1.95 LINK O THR A 48 CA CA A1154 1555 1555 2.49 LINK OG1 THR A 48 CA CA A1154 1555 1555 2.39 LINK OD2 ASP A 50 CA CA A1154 1555 1555 2.32 LINK O ASN A 119 CA CA A1154 1555 1555 2.34 LINK OD1 ASP A 122 CA CA A1154 1555 1555 2.41 LINK OD1 ASP A 123 CA CA A1154 1555 1555 2.35 LINK CA CA A1154 O HOH A2152 1555 1555 2.47 CISPEP 1 ASN A 77 PRO A 78 0 -6.49 CISPEP 2 ASN A 77 PRO A 78 0 5.13 SITE 1 AC1 6 THR A 48 ASP A 50 ASN A 119 ASP A 122 SITE 2 AC1 6 ASP A 123 HOH A2152 SITE 1 AC2 7 HIS A 44 TYR A 46 TYR A 86 TYR A 142 SITE 2 AC2 7 GLU A 152 HOH A2306 HOH A2310 SITE 1 AC3 5 GLY A 1 SER A 2 HIS A 3 MET A 4 SITE 2 AC3 5 GLU A 145 SITE 1 AC4 5 LYS A 42 TYR A 142 SER A 143 HOH A2230 SITE 2 AC4 5 HOH A2311 CRYST1 52.697 52.697 194.159 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018976 0.010956 0.000000 0.00000 SCALE2 0.000000 0.021912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005150 0.00000