HEADER TRANSPORT PROTEIN 21-JUL-11 3ZUY TITLE CRYSTAL STRUCTURE OF A BACTERIAL HOMOLOGUE OF THE BILE ACID SODIUM TITLE 2 SYMPORTER ASBT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: NMB0705; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS TRANSPORT PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.-J.HU,S.IWATA,A.D.CAMERON,D.DREW REVDAT 4 07-FEB-24 3ZUY 1 REMARK REVDAT 3 31-MAY-23 3ZUY 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 LINK REVDAT 2 26-OCT-11 3ZUY 1 AUTHOR JRNL REVDAT 1 12-OCT-11 3ZUY 0 JRNL AUTH N.-J.HU,S.IWATA,A.D.CAMERON,D.DREW JRNL TITL CRYSTAL STRUCTURE OF A BACTERIAL HOMOLOGUE OF THE BILE ACID JRNL TITL 2 SODIUM SYMPORTER ASBT. JRNL REF NATURE V. 478 408 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21976025 JRNL DOI 10.1038/NATURE10450 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2777 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2254 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2627 REMARK 3 BIN R VALUE (WORKING SET) : 0.2233 REMARK 3 BIN FREE R VALUE : 0.2633 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 193 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.41130 REMARK 3 B22 (A**2) : 2.41130 REMARK 3 B33 (A**2) : -4.82260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.385 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2508 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3410 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 892 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 26 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 342 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2508 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 327 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3075 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.28 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2-1320 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.3243 69.5990 80.2044 REMARK 3 T TENSOR REMARK 3 T11: -0.2668 T22: 0.2960 REMARK 3 T33: -0.2914 T12: -0.0241 REMARK 3 T13: 0.0156 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.8953 L22: 1.0969 REMARK 3 L33: 3.0232 L12: 0.2966 REMARK 3 L13: 0.0112 L23: 0.3420 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.5461 S13: 0.1327 REMARK 3 S21: 0.0035 S22: 0.2568 S23: -0.0319 REMARK 3 S31: -0.1032 S32: 0.3481 S33: -0.2193 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=NA TCH LDA PTY. REMARK 3 NUMBER OF ATOMS WITH PROPER CCP4 ATOM TYPE=2290. NUMBER WITH REMARK 3 APPROX DEFAULT CCP4 ATOM TYPE=191. NUMBER TREATED BY BAD NON- REMARK 3 BONDED CONTACTS=2. REMARK 4 REMARK 4 3ZUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 24.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: PDB ENTRY 3ZUX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CITRATE PH 4.5, 70 MM REMARK 280 NACL, AND 22-24% PEG400. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.22500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.61250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.83750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.22500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.83750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.61250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 310 REMARK 465 LYS A 311 REMARK 465 HIS A 312 REMARK 465 LYS A 313 REMARK 465 LYS A 314 REMARK 465 PRO A 315 REMARK 465 GLY A 316 REMARK 465 SER A 317 REMARK 465 GLU A 318 REMARK 465 ASN A 319 REMARK 465 LEU A 320 REMARK 465 TYR A 321 REMARK 465 PHE A 322 REMARK 465 GLN A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 280 79.34 -119.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TCH A 1313 REMARK 610 LDA A 1314 REMARK 610 LDA A 1317 REMARK 610 LDA A 1318 REMARK 610 PTY A 1319 REMARK 610 PTY A 1320 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 77 OE1 REMARK 620 2 GLU A 260 O 94.4 REMARK 620 3 VAL A 261 O 126.2 87.1 REMARK 620 4 MET A 263 O 128.9 77.4 104.0 REMARK 620 5 GLN A 264 OE1 94.9 168.4 93.0 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 114 OG REMARK 620 2 ASN A 115 OD1 96.4 REMARK 620 3 SER A 128 O 166.0 91.7 REMARK 620 4 SER A 128 OG 98.9 87.2 92.9 REMARK 620 5 THR A 132 OG1 79.6 94.2 88.5 178.0 REMARK 620 6 GLU A 260 OE1 80.6 174.5 92.2 88.7 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TCH A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TCH A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1320 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZUX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BACTERIAL HOMOLOGUE OF THE BILE ACID SODIUM REMARK 900 SYMPORTER ASBT. REMARK 999 REMARK 999 SEQUENCE REMARK 999 LEU87CYS, ILE138THR, THR256ALA MUTATIONS OBSERVED PREVIOUSLY REMARK 999 IN PDB ENTRY 3ZUX HAVE BEEN CORRECTED IN THIS WILDTYPE STRUCTURE. DBREF 3ZUY A 1 315 UNP Q9K0A9 Q9K0A9_NEIMB 1 315 SEQADV 3ZUY GLY A 316 UNP Q9K0A9 EXPRESSION TAG SEQADV 3ZUY SER A 317 UNP Q9K0A9 EXPRESSION TAG SEQADV 3ZUY GLU A 318 UNP Q9K0A9 EXPRESSION TAG SEQADV 3ZUY ASN A 319 UNP Q9K0A9 EXPRESSION TAG SEQADV 3ZUY LEU A 320 UNP Q9K0A9 EXPRESSION TAG SEQADV 3ZUY TYR A 321 UNP Q9K0A9 EXPRESSION TAG SEQADV 3ZUY PHE A 322 UNP Q9K0A9 EXPRESSION TAG SEQADV 3ZUY GLN A 323 UNP Q9K0A9 EXPRESSION TAG SEQRES 1 A 323 MET ASN ILE LEU SER LYS ILE SER SER PHE ILE GLY LYS SEQRES 2 A 323 THR PHE SER LEU TRP ALA ALA LEU PHE ALA ALA ALA ALA SEQRES 3 A 323 PHE PHE ALA PRO ASP THR PHE LYS TRP ALA GLY PRO TYR SEQRES 4 A 323 ILE PRO TRP LEU LEU GLY ILE ILE MET PHE GLY MET GLY SEQRES 5 A 323 LEU THR LEU LYS PRO SER ASP PHE ASP ILE LEU PHE LYS SEQRES 6 A 323 HIS PRO LYS VAL VAL ILE ILE GLY VAL ILE ALA GLN PHE SEQRES 7 A 323 ALA ILE MET PRO ALA THR ALA TRP LEU LEU SER LYS LEU SEQRES 8 A 323 LEU ASN LEU PRO ALA GLU ILE ALA VAL GLY VAL ILE LEU SEQRES 9 A 323 VAL GLY CYS CYS PRO GLY GLY THR ALA SER ASN VAL MET SEQRES 10 A 323 THR TYR LEU ALA ARG GLY ASN VAL ALA LEU SER VAL ALA SEQRES 11 A 323 VAL THR SER VAL SER THR LEU ILE SER PRO LEU LEU THR SEQRES 12 A 323 PRO ALA ILE PHE LEU MET LEU ALA GLY GLU MET LEU GLU SEQRES 13 A 323 ILE GLN ALA ALA GLY MET LEU MET SER ILE VAL LYS MET SEQRES 14 A 323 VAL LEU LEU PRO ILE VAL LEU GLY LEU ILE VAL HIS LYS SEQRES 15 A 323 VAL LEU GLY SER LYS THR GLU LYS LEU THR ASP ALA LEU SEQRES 16 A 323 PRO LEU VAL SER VAL ALA ALA ILE VAL LEU ILE ILE GLY SEQRES 17 A 323 ALA VAL VAL GLY ALA SER LYS GLY LYS ILE MET GLU SER SEQRES 18 A 323 GLY LEU LEU ILE PHE ALA VAL VAL VAL LEU HIS ASN GLY SEQRES 19 A 323 ILE GLY TYR LEU LEU GLY PHE PHE ALA ALA LYS TRP THR SEQRES 20 A 323 GLY LEU PRO TYR ASP ALA GLN LYS THR LEU THR ILE GLU SEQRES 21 A 323 VAL GLY MET GLN ASN SER GLY LEU ALA ALA ALA LEU ALA SEQRES 22 A 323 ALA ALA HIS PHE ALA ALA ALA PRO VAL VAL ALA VAL PRO SEQRES 23 A 323 GLY ALA LEU PHE SER VAL TRP HIS ASN ILE SER GLY SER SEQRES 24 A 323 LEU LEU ALA THR TYR TRP ALA ALA LYS ALA GLY LYS HIS SEQRES 25 A 323 LYS LYS PRO GLY SER GLU ASN LEU TYR PHE GLN HET NA A1310 1 HET NA A1311 1 HET TCH A1312 35 HET TCH A1313 22 HET LDA A1314 10 HET LDA A1315 16 HET LDA A1316 16 HET LDA A1317 9 HET LDA A1318 9 HET PTY A1319 34 HET PTY A1320 40 HETNAM NA SODIUM ION HETNAM TCH TAUROCHOLIC ACID HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM PTY PHOSPHATIDYLETHANOLAMINE FORMUL 2 NA 2(NA 1+) FORMUL 4 TCH 2(C26 H45 N O7 S) FORMUL 6 LDA 5(C14 H31 N O) FORMUL 11 PTY 2(C40 H80 N O8 P) FORMUL 13 HOH *26(H2 O) HELIX 1 1 ASN A 2 THR A 14 1 13 HELIX 2 2 THR A 14 ALA A 29 1 16 HELIX 3 3 PRO A 30 PRO A 38 5 9 HELIX 4 4 TYR A 39 THR A 54 1 16 HELIX 5 5 LYS A 56 ASP A 59 5 4 HELIX 6 6 PHE A 60 HIS A 66 1 7 HELIX 7 7 HIS A 66 LEU A 92 1 27 HELIX 8 8 PRO A 95 CYS A 108 1 14 HELIX 9 9 THR A 112 ALA A 121 1 10 HELIX 10 10 ASN A 124 GLY A 152 1 29 HELIX 11 11 LEU A 155 VAL A 170 1 16 HELIX 12 12 VAL A 170 GLY A 185 1 16 HELIX 13 13 THR A 188 THR A 247 1 60 HELIX 14 14 PRO A 250 MET A 263 1 14 HELIX 15 15 ASN A 265 PHE A 277 1 13 HELIX 16 16 ALA A 280 VAL A 283 5 4 HELIX 17 17 ALA A 284 ALA A 309 1 26 LINK OE1 GLN A 77 NA NA A1311 1555 1555 2.29 LINK OG SER A 114 NA NA A1310 1555 1555 2.53 LINK OD1 ASN A 115 NA NA A1310 1555 1555 2.31 LINK O SER A 128 NA NA A1310 1555 1555 2.24 LINK OG SER A 128 NA NA A1310 1555 1555 2.33 LINK OG1 THR A 132 NA NA A1310 1555 1555 2.35 LINK OE1 GLU A 260 NA NA A1310 1555 1555 2.24 LINK O GLU A 260 NA NA A1311 1555 1555 2.39 LINK O VAL A 261 NA NA A1311 1555 1555 2.35 LINK O MET A 263 NA NA A1311 1555 1555 2.23 LINK OE1 GLN A 264 NA NA A1311 1555 1555 2.31 SITE 1 AC1 5 SER A 114 ASN A 115 SER A 128 THR A 132 SITE 2 AC1 5 GLU A 260 SITE 1 AC2 6 GLN A 77 GLY A 110 GLU A 260 VAL A 261 SITE 2 AC2 6 MET A 263 GLN A 264 SITE 1 AC3 16 GLY A 12 LYS A 13 PHE A 15 PHE A 28 SITE 2 AC3 16 ILE A 47 THR A 112 ALA A 113 VAL A 116 SITE 3 AC3 16 LEU A 120 SER A 199 VAL A 200 ILE A 203 SITE 4 AC3 16 ASN A 295 LDA A1317 HOH A2024 HOH A2025 SITE 1 AC4 10 ASP A 31 LYS A 34 PRO A 38 VAL A 69 SITE 2 AC4 10 ILE A 72 THR A 247 GLY A 248 LEU A 249 SITE 3 AC4 10 PRO A 250 HOH A2026 SITE 1 AC5 7 LYS A 13 PHE A 15 SER A 16 MET A 117 SITE 2 AC5 7 ASN A 295 SER A 299 LDA A1317 SITE 1 AC6 7 PHE A 60 PHE A 64 VAL A 134 LEU A 137 SITE 2 AC6 7 ILE A 157 ALA A 160 MET A 164 SITE 1 AC7 4 PRO A 41 TRP A 42 LYS A 168 PRO A 173 SITE 1 AC8 5 SER A 299 LEU A 300 THR A 303 TCH A1312 SITE 2 AC8 5 LDA A1314 SITE 1 AC9 3 GLU A 153 GLU A 156 ALA A 279 SITE 1 BC1 9 GLY A 234 LEU A 238 PHE A 241 TYR A 251 SITE 2 BC1 9 THR A 258 LEU A 301 TYR A 304 TRP A 305 SITE 3 BC1 9 LYS A 308 SITE 1 BC2 13 ARG A 122 ILE A 218 MET A 219 GLU A 220 SITE 2 BC2 13 SER A 221 GLY A 222 LEU A 223 LEU A 224 SITE 3 BC2 13 PHE A 226 THR A 303 TYR A 304 ALA A 306 SITE 4 BC2 13 ALA A 307 CRYST1 73.350 73.350 162.450 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006156 0.00000