HEADER HYDROLASE 27-JUL-11 3ZVS TITLE CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS AT 1.4 A RESOLUTION COMPLEXED WITH MALONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEMETZINCIN; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 ATCC: 49558; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 10 OTHER_DETAILS: DSM 4304 KEYWDS METALLOPROTEASE, PROTEASE, HYDROLASE, METZINCIN, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.GRAEF,M.SCHACHERL,U.BAUMANN REVDAT 3 20-DEC-23 3ZVS 1 REMARK LINK ATOM REVDAT 2 12-SEP-12 3ZVS 1 JRNL REMARK REVDAT 1 08-AUG-12 3ZVS 0 JRNL AUTH C.GRAEF,M.SCHACHERL,S.WALTERSPERGER,U.BAUMANN JRNL TITL CRYSTAL STRUCTURES OF ARCHAEMETZINCIN REVEAL A MOLDABLE JRNL TITL 2 SUBSTRATE-BINDING SITE. JRNL REF PLOS ONE V. 7 43863 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22937112 JRNL DOI 10.1371/JOURNAL.PONE.0043863 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 96244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5501 - 3.0062 0.94 9592 200 0.1278 0.1246 REMARK 3 2 3.0062 - 2.3863 0.93 9483 211 0.1367 0.1624 REMARK 3 3 2.3863 - 2.0848 0.92 9428 193 0.1342 0.1518 REMARK 3 4 2.0848 - 1.8942 0.92 9492 199 0.1439 0.1873 REMARK 3 5 1.8942 - 1.7584 0.93 9536 205 0.1461 0.1675 REMARK 3 6 1.7584 - 1.6547 0.94 9638 203 0.1513 0.1871 REMARK 3 7 1.6547 - 1.5719 0.94 9650 208 0.1594 0.2019 REMARK 3 8 1.5719 - 1.5035 0.93 9536 200 0.1760 0.2100 REMARK 3 9 1.5035 - 1.4456 0.93 9535 184 0.1948 0.2271 REMARK 3 10 1.4456 - 1.3957 0.81 8355 196 0.2265 0.2496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 43.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53570 REMARK 3 B22 (A**2) : 1.92460 REMARK 3 B33 (A**2) : -1.38890 REMARK 3 B12 (A**2) : -3.60610 REMARK 3 B13 (A**2) : -1.80120 REMARK 3 B23 (A**2) : 0.96870 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3915 REMARK 3 ANGLE : 1.434 5312 REMARK 3 CHIRALITY : 0.081 617 REMARK 3 PLANARITY : 0.007 686 REMARK 3 DIHEDRAL : 12.780 1498 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290049180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 31.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XHQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % PEG 3350 0.2 M SODIUM MALONATE PH REMARK 280 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 159 REMARK 465 TYR A 160 REMARK 465 ARG C 159 REMARK 465 TYR C 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2127 O HOH B 2129 2.01 REMARK 500 O HOH B 2168 O HOH B 2169 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2189 O HOH B 2213 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2137 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B2033 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B2052 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B2065 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2132 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH C2007 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH C2058 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH C2118 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1159 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 117 NE2 REMARK 620 2 HIS A 121 NE2 98.8 REMARK 620 3 HIS A 127 NE2 108.8 103.4 REMARK 620 4 MLI A1161 O7 110.2 107.7 124.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1160 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 132 SG 112.5 REMARK 620 3 CYS A 151 SG 107.3 109.3 REMARK 620 4 CYS A 154 SG 109.9 106.8 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1161 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 117 NE2 REMARK 620 2 HIS B 121 NE2 99.3 REMARK 620 3 HIS B 127 NE2 108.5 102.2 REMARK 620 4 MLI B1163 O7 108.5 108.0 126.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 128 SG REMARK 620 2 CYS B 132 SG 111.2 REMARK 620 3 CYS B 151 SG 107.0 110.2 REMARK 620 4 CYS B 154 SG 111.4 108.1 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1159 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 117 NE2 REMARK 620 2 HIS C 121 NE2 100.0 REMARK 620 3 HIS C 127 NE2 109.8 99.9 REMARK 620 4 MLI C1161 O6 95.6 158.8 88.1 REMARK 620 5 MLI C1161 O7 109.7 107.1 126.5 53.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1160 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 128 SG REMARK 620 2 CYS C 132 SG 114.0 REMARK 620 3 CYS C 151 SG 105.9 110.5 REMARK 620 4 CYS C 154 SG 110.4 105.9 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI C 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XHQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS REMARK 900 FULGIDUS AT 1.45 A RESOLUTION REMARK 900 RELATED ID: 4A3W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS REMARK 900 FULGIDUS AT 2.16 A RESOLUTION COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 4AXQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS REMARK 900 FULGIDUS AT 1.4 A RESOLUTION DBREF 3ZVS A 1 160 UNP O29917 AMZA_ARCFU 1 160 DBREF 3ZVS B 1 160 UNP O29917 AMZA_ARCFU 1 160 DBREF 3ZVS C 1 160 UNP O29917 AMZA_ARCFU 1 160 SEQRES 1 A 160 MET LYS ILE TYR ILE GLN PRO LEU SER VAL ASN SER HIS SEQRES 2 A 160 THR VAL GLU VAL LEU ALA ASN SER LEU PRO LYS ILE PHE SEQRES 3 A 160 ASN ALA GLU VAL PHE VAL LEU PRO ALA SER ASP VAL SER SEQRES 4 A 160 LEU LYS CYS TYR ASN ALA SER ARG ARG GLN TYR ASN SER SEQRES 5 A 160 THR CYS ILE LEU ARG MET LEU PRO PRO ILE LYS VAL THR SEQRES 6 A 160 LEU GLY VAL THR GLY LYS ASP ILE TYR ALA LYS GLY MET SEQRES 7 A 160 ASN PHE VAL PHE GLY GLU ALA GLU LEU GLY GLY ALA ARG SEQRES 8 A 160 ALA VAL LEU SER VAL PHE ARG LEU THR THR ALA ASP SER SEQRES 9 A 160 GLU LEU TYR ARG GLU ARG VAL VAL LYS GLU ALA VAL HIS SEQRES 10 A 160 GLU ILE GLY HIS VAL LEU GLY LEU LYS HIS CYS SER ASN SEQRES 11 A 160 ASN CYS VAL MET ARG PHE SER ASN SER VAL GLN ASP VAL SEQRES 12 A 160 ASP ARG LYS PRO VAL SER PHE CYS ARG GLU CYS ALA SER SEQRES 13 A 160 LYS ILE ARG TYR SEQRES 1 B 160 MET LYS ILE TYR ILE GLN PRO LEU SER VAL ASN SER HIS SEQRES 2 B 160 THR VAL GLU VAL LEU ALA ASN SER LEU PRO LYS ILE PHE SEQRES 3 B 160 ASN ALA GLU VAL PHE VAL LEU PRO ALA SER ASP VAL SER SEQRES 4 B 160 LEU LYS CYS TYR ASN ALA SER ARG ARG GLN TYR ASN SER SEQRES 5 B 160 THR CYS ILE LEU ARG MET LEU PRO PRO ILE LYS VAL THR SEQRES 6 B 160 LEU GLY VAL THR GLY LYS ASP ILE TYR ALA LYS GLY MET SEQRES 7 B 160 ASN PHE VAL PHE GLY GLU ALA GLU LEU GLY GLY ALA ARG SEQRES 8 B 160 ALA VAL LEU SER VAL PHE ARG LEU THR THR ALA ASP SER SEQRES 9 B 160 GLU LEU TYR ARG GLU ARG VAL VAL LYS GLU ALA VAL HIS SEQRES 10 B 160 GLU ILE GLY HIS VAL LEU GLY LEU LYS HIS CYS SER ASN SEQRES 11 B 160 ASN CYS VAL MET ARG PHE SER ASN SER VAL GLN ASP VAL SEQRES 12 B 160 ASP ARG LYS PRO VAL SER PHE CYS ARG GLU CYS ALA SER SEQRES 13 B 160 LYS ILE ARG TYR SEQRES 1 C 160 MET LYS ILE TYR ILE GLN PRO LEU SER VAL ASN SER HIS SEQRES 2 C 160 THR VAL GLU VAL LEU ALA ASN SER LEU PRO LYS ILE PHE SEQRES 3 C 160 ASN ALA GLU VAL PHE VAL LEU PRO ALA SER ASP VAL SER SEQRES 4 C 160 LEU LYS CYS TYR ASN ALA SER ARG ARG GLN TYR ASN SER SEQRES 5 C 160 THR CYS ILE LEU ARG MET LEU PRO PRO ILE LYS VAL THR SEQRES 6 C 160 LEU GLY VAL THR GLY LYS ASP ILE TYR ALA LYS GLY MET SEQRES 7 C 160 ASN PHE VAL PHE GLY GLU ALA GLU LEU GLY GLY ALA ARG SEQRES 8 C 160 ALA VAL LEU SER VAL PHE ARG LEU THR THR ALA ASP SER SEQRES 9 C 160 GLU LEU TYR ARG GLU ARG VAL VAL LYS GLU ALA VAL HIS SEQRES 10 C 160 GLU ILE GLY HIS VAL LEU GLY LEU LYS HIS CYS SER ASN SEQRES 11 C 160 ASN CYS VAL MET ARG PHE SER ASN SER VAL GLN ASP VAL SEQRES 12 C 160 ASP ARG LYS PRO VAL SER PHE CYS ARG GLU CYS ALA SER SEQRES 13 C 160 LYS ILE ARG TYR HET ZN A1159 1 HET ZN A1160 1 HET MLI A1161 9 HET MLI A1162 9 HET ZN B1161 1 HET ZN B1162 1 HET MLI B1163 9 HET ZN C1159 1 HET ZN C1160 1 HET MLI C1161 9 HETNAM ZN ZINC ION HETNAM MLI MALONATE ION FORMUL 4 ZN 6(ZN 2+) FORMUL 6 MLI 4(C3 H2 O4 2-) FORMUL 14 HOH *780(H2 O) HELIX 1 1 ASN A 11 ASN A 27 1 17 HELIX 2 2 SER A 39 LYS A 41 5 3 HELIX 3 3 SER A 52 LEU A 59 1 8 HELIX 4 4 PHE A 97 THR A 100 5 4 HELIX 5 5 ASP A 103 LEU A 123 1 21 HELIX 6 6 SER A 139 LYS A 146 1 8 HELIX 7 7 CYS A 151 ILE A 158 1 8 HELIX 8 8 ASN B 11 ASN B 27 1 17 HELIX 9 9 SER B 39 LYS B 41 5 3 HELIX 10 10 SER B 52 LEU B 59 1 8 HELIX 11 11 PHE B 97 THR B 100 5 4 HELIX 12 12 ASP B 103 LEU B 123 1 21 HELIX 13 13 SER B 139 LYS B 146 1 8 HELIX 14 14 CYS B 151 TYR B 160 1 10 HELIX 15 15 ASN C 11 ASN C 27 1 17 HELIX 16 16 SER C 39 LYS C 41 5 3 HELIX 17 17 SER C 52 LEU C 59 1 8 HELIX 18 18 PHE C 97 THR C 100 5 4 HELIX 19 19 ASP C 103 LEU C 123 1 21 HELIX 20 20 SER C 139 LYS C 146 1 8 HELIX 21 21 CYS C 151 ILE C 158 1 8 SHEET 1 AA 5 GLU A 29 VAL A 32 0 SHEET 2 AA 5 LYS A 2 PRO A 7 1 O ILE A 3 N PHE A 31 SHEET 3 AA 5 THR A 65 THR A 69 1 O LEU A 66 N GLN A 6 SHEET 4 AA 5 ARG A 91 SER A 95 1 O ALA A 92 N GLY A 67 SHEET 5 AA 5 GLY A 83 ALA A 85 -1 O GLU A 84 N VAL A 93 SHEET 1 AB 3 TYR A 43 ASN A 44 0 SHEET 2 AB 3 GLN A 49 ASN A 51 -1 O GLN A 49 N ASN A 44 SHEET 3 AB 3 ILE A 73 TYR A 74 1 N TYR A 74 O TYR A 50 SHEET 1 BA 5 GLU B 29 VAL B 32 0 SHEET 2 BA 5 LYS B 2 LEU B 8 1 O ILE B 3 N PHE B 31 SHEET 3 BA 5 THR B 65 THR B 69 1 O LEU B 66 N GLN B 6 SHEET 4 BA 5 ARG B 91 SER B 95 1 O ALA B 92 N GLY B 67 SHEET 5 BA 5 GLY B 83 ALA B 85 -1 O GLU B 84 N VAL B 93 SHEET 1 BB 3 TYR B 43 ASN B 44 0 SHEET 2 BB 3 GLN B 49 ASN B 51 -1 O GLN B 49 N ASN B 44 SHEET 3 BB 3 ILE B 73 TYR B 74 1 N TYR B 74 O TYR B 50 SHEET 1 CA 5 GLU C 29 VAL C 32 0 SHEET 2 CA 5 LYS C 2 LEU C 8 1 O ILE C 3 N PHE C 31 SHEET 3 CA 5 THR C 65 THR C 69 1 O LEU C 66 N GLN C 6 SHEET 4 CA 5 ARG C 91 SER C 95 1 O ALA C 92 N GLY C 67 SHEET 5 CA 5 GLY C 83 ALA C 85 -1 O GLU C 84 N VAL C 93 SHEET 1 CB 3 TYR C 43 ASN C 44 0 SHEET 2 CB 3 GLN C 49 ASN C 51 -1 O GLN C 49 N ASN C 44 SHEET 3 CB 3 ILE C 73 TYR C 74 1 N TYR C 74 O TYR C 50 SSBOND 1 CYS A 42 CYS A 54 1555 1555 2.01 SSBOND 2 CYS B 42 CYS B 54 1555 1555 2.05 SSBOND 3 CYS C 42 CYS C 54 1555 1555 2.02 LINK NE2 HIS A 117 ZN ZN A1159 1555 1555 2.08 LINK NE2 HIS A 121 ZN ZN A1159 1555 1555 2.07 LINK NE2 HIS A 127 ZN ZN A1159 1555 1555 2.00 LINK SG CYS A 128 ZN ZN A1160 1555 1555 2.35 LINK SG CYS A 132 ZN ZN A1160 1555 1555 2.36 LINK SG CYS A 151 ZN ZN A1160 1555 1555 2.32 LINK SG CYS A 154 ZN ZN A1160 1555 1555 2.32 LINK ZN ZN A1159 O7 MLI A1161 1555 1555 1.97 LINK NE2 HIS B 117 ZN ZN B1161 1555 1555 2.02 LINK NE2 HIS B 121 ZN ZN B1161 1555 1555 2.07 LINK NE2 HIS B 127 ZN ZN B1161 1555 1555 2.04 LINK SG CYS B 128 ZN ZN B1162 1555 1555 2.36 LINK SG CYS B 132 ZN ZN B1162 1555 1555 2.39 LINK SG CYS B 151 ZN ZN B1162 1555 1555 2.30 LINK SG CYS B 154 ZN ZN B1162 1555 1555 2.31 LINK ZN ZN B1161 O7 MLI B1163 1555 1555 1.89 LINK NE2 HIS C 117 ZN ZN C1159 1555 1555 2.06 LINK NE2 HIS C 121 ZN ZN C1159 1555 1555 2.06 LINK NE2 HIS C 127 ZN ZN C1159 1555 1555 2.01 LINK SG CYS C 128 ZN ZN C1160 1555 1555 2.37 LINK SG CYS C 132 ZN ZN C1160 1555 1555 2.34 LINK SG CYS C 151 ZN ZN C1160 1555 1555 2.37 LINK SG CYS C 154 ZN ZN C1160 1555 1555 2.31 LINK ZN ZN C1159 O6 MLI C1161 1555 1555 2.68 LINK ZN ZN C1159 O7 MLI C1161 1555 1555 1.89 CISPEP 1 LYS A 63 VAL A 64 0 -6.45 CISPEP 2 LYS B 63 VAL B 64 0 -5.54 CISPEP 3 LYS C 63 VAL C 64 0 -2.34 SITE 1 AC1 4 HIS A 117 HIS A 121 HIS A 127 MLI A1161 SITE 1 AC2 4 CYS A 128 CYS A 132 CYS A 151 CYS A 154 SITE 1 AC3 4 HIS B 117 HIS B 121 HIS B 127 MLI B1163 SITE 1 AC4 4 CYS B 128 CYS B 132 CYS B 151 CYS B 154 SITE 1 AC5 4 HIS C 117 HIS C 121 HIS C 127 MLI C1161 SITE 1 AC6 4 CYS C 128 CYS C 132 CYS C 151 CYS C 154 SITE 1 AC7 13 PHE A 82 GLY A 83 HIS A 117 GLU A 118 SITE 2 AC7 13 HIS A 121 HIS A 127 PHE A 136 ZN A1159 SITE 3 AC7 13 HOH A2171 HOH A2211 HOH A2238 ARG C 152 SITE 4 AC7 13 HOH C2238 SITE 1 AC8 13 ARG A 152 VAL B 81 PHE B 82 GLY B 83 SITE 2 AC8 13 HIS B 117 GLU B 118 HIS B 121 HIS B 127 SITE 3 AC8 13 PHE B 136 ZN B1161 HOH B2166 HOH B2230 SITE 4 AC8 13 HOH B2265 SITE 1 AC9 14 ARG B 152 VAL C 81 PHE C 82 GLY C 83 SITE 2 AC9 14 HIS C 117 GLU C 118 HIS C 121 HIS C 127 SITE 3 AC9 14 PHE C 136 ZN C1159 HOH C2145 HOH C2191 SITE 4 AC9 14 HOH C2210 HOH C2248 SITE 1 BC1 9 TYR A 50 LYS A 71 HOH A2113 HOH A2158 SITE 2 BC1 9 HOH A2159 HOH A2265 HOH A2267 SER B 12 SITE 3 BC1 9 LYS B 63 CRYST1 35.302 63.490 64.533 71.39 86.68 82.67 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028327 -0.003644 -0.000523 0.00000 SCALE2 0.000000 0.015880 -0.005268 0.00000 SCALE3 0.000000 0.000000 0.016354 0.00000