HEADER SUGAR BINDING PROTEIN 28-JUL-11 3ZW1 TITLE STRUCTURE OF BAMBL LECTINE IN COMPLEX WITH LEWIX X ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAMBL LECTIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BAMBL LECTIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA; SOURCE 3 ORGANISM_TAXID: 152480; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET25B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA; SOURCE 12 ORGANISM_TAXID: 152480; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VARIANT: PLYS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET25B KEYWDS SUGAR BINDING PROTEIN, FUCOSE BINDING LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR A.AUDFRAY,J.CLAUDINON,S.ABOUNIT,N.RUVOEN-CLOUET,G.LARSON,M.WIMMEROVA, AUTHOR 2 J.LEPENDU,W.ROMER,A.VARROT,A.IMBERTY REVDAT 4 20-DEC-23 3ZW1 1 HETSYN REVDAT 3 29-JUL-20 3ZW1 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 09-OCT-13 3ZW1 1 JRNL REVDAT 1 16-NOV-11 3ZW1 0 JRNL AUTH J.TOPIN,J.ARNAUD,A.SARKAR,A.AUDFRAY,E.GILLON,S.PEREZ, JRNL AUTH 2 H.JAMET,A.VARROT,A.IMBERTY,A.THOMAS JRNL TITL DECIPHERING THE GLYCAN PREFERENCE OF BACTERIAL LECTINS BY JRNL TITL 2 GLYCAN ARRAY AND MOLECULAR DOCKING WITH VALIDATION BY JRNL TITL 3 MICROCALORIMETRY AND CRYSTALLOGRAPHY. JRNL REF PLOS ONE V. 8 71149 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23976992 JRNL DOI 10.1371/JOURNAL.PONE.0071149 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 21930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1180 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.263 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1556 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 951 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2155 ; 1.709 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2275 ; 0.894 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 6.892 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;38.426 ;23.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 178 ;10.620 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 6.653 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1671 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 329 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 186 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 891 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 723 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 782 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 1 ; 0.028 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 877 ; 1.081 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 377 ; 0.289 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1398 ; 1.882 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 679 ; 2.305 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 756 ; 3.371 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. DISORDERED SIDE CHAINS REMARK 3 WERE MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 3ZW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290048912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.13990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZW0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28 % PEG 6000, 100MM SODIUM ACETATE PH REMARK 280 5.0, 200MM TRISODIUM CITRATE. 10% ETHYLENE GLYCOL WAD ADDED AS REMARK 280 CRYOPROTECTANT PRIOR TO FREEZING REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.72000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 40.72000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 40.72000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 40.72000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 40.72000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 40.72000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 40.72000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 40.72000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 40.72000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 40.72000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 40.72000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 40.72000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 40.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 -40.72000 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 40.72000 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 40.72000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 40.72000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2003 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2008 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2002 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2004 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2027 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 -95.69 -130.38 REMARK 500 SER B 32 -101.20 -131.24 REMARK 500 SER B 32 -94.95 -130.22 REMARK 500 ASP B 77 70.97 -162.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZW2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE LECTINE BAMBL FROM BURKHOLDERIA AMBIFARIA IN REMARK 900 COMPLEX WITH BLOOD GROUP H TYPE 1 TETRASACCHARIDE REMARK 900 RELATED ID: 3ZW0 RELATED DB: PDB REMARK 900 STRUCTURE OF BAMBL LECTIN FROM BURKHOLDERIA AMBIFARIA DBREF 3ZW1 A 1 87 UNP B1Z019 B1Z019_BURA4 1 87 DBREF 3ZW1 B 1 87 UNP B1Z019 B1Z019_BURA4 1 87 SEQRES 1 A 87 MHO GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 A 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 A 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 A 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 A 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 A 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 A 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 B 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 B 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 B 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 B 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 B 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 B 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 B 87 TRP THR ARG GLY ALA TYR THR GLY LEU MODRES 3ZW1 MHO A 1 MET S-OXYMETHIONINE HET MHO A 1 9 HET NAG C 1 15 HET FUC C 2 10 HET GAL D 1 12 HET NAG D 2 14 HET FUC D 3 10 HET GAL D 4 11 HET NAG F 1 15 HET FUC F 2 10 HET GLA B 100 12 HET GAL E 1 12 HET NAG E 2 14 HET FUC E 3 10 HET GAL E 4 11 HETNAM MHO S-OXYMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 1 MHO C5 H11 N O3 S FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 4 GAL 4(C6 H12 O6) FORMUL 6 GLA C6 H12 O6 FORMUL 11 HOH *237(H2 O) SHEET 1 AA 4 GLN A 2 TRP A 8 0 SHEET 2 AA 4 SER A 13 ASN A 20 -1 O SER A 13 N TRP A 8 SHEET 3 AA 4 LYS A 23 TYR A 29 -1 O LYS A 23 N ASN A 20 SHEET 4 AA 4 TYR A 35 ALA A 42 -1 O TYR A 35 N CYS A 28 SHEET 1 AB 4 ASN A 45 SER A 53 0 SHEET 2 AB 4 ALA A 56 SER A 65 -1 O ALA A 56 N SER A 53 SHEET 3 AB 4 SER A 68 TRP A 74 -1 O SER A 68 N SER A 65 SHEET 4 AB 4 TRP A 79 ARG A 81 -1 O THR A 80 N CYS A 73 SHEET 1 BA 4 GLN B 2 TRP B 8 0 SHEET 2 BA 4 SER B 13 ASN B 20 -1 O SER B 13 N TRP B 8 SHEET 3 BA 4 LYS B 23 TYR B 29 -1 O LYS B 23 N ASN B 20 SHEET 4 BA 4 TYR B 35 ALA B 42 -1 O TYR B 35 N CYS B 28 SHEET 1 BB 4 ASN B 45 SER B 53 0 SHEET 2 BB 4 ALA B 56 SER B 65 -1 O ALA B 56 N SER B 53 SHEET 3 BB 4 SER B 68 TRP B 74 -1 O SER B 68 N SER B 65 SHEET 4 BB 4 TRP B 79 ARG B 81 -1 O THR B 80 N CYS B 73 LINK C MHO A 1 N GLN A 2 1555 1555 1.38 LINK O3 BGLA B 100 C1 NAG E 2 1555 1555 1.43 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.43 LINK O3 GAL D 1 C1 NAG D 2 1555 1555 1.40 LINK O3 NAG D 2 C1 FUC D 3 1555 1555 1.45 LINK O4 NAG D 2 C1 GAL D 4 1555 1555 1.43 LINK O3 AGAL E 1 C1 NAG E 2 1555 1555 1.43 LINK O3 NAG E 2 C1 FUC E 3 1555 1555 1.43 LINK O4 NAG E 2 C1 GAL E 4 1555 1555 1.43 LINK O3 NAG F 1 C1 FUC F 2 1555 1555 1.44 CISPEP 1 THR A 11 PRO A 12 0 -4.99 CISPEP 2 THR B 11 PRO B 12 0 -11.25 CRYST1 81.440 81.440 81.440 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012279 0.00000 MTRIX1 1 -0.949180 0.244420 -0.198290 10.78935 1 MTRIX2 1 -0.249670 -0.201130 0.947210 -35.84144 1 MTRIX3 1 0.191630 0.948580 0.251940 -7.33737 1 HETATM 1 N MHO A 1 14.119 -21.742 16.271 1.00 19.09 N HETATM 2 CA MHO A 1 13.055 -20.740 16.421 1.00 17.23 C HETATM 3 CB MHO A 1 11.741 -21.444 16.160 1.00 19.00 C HETATM 4 CG MHO A 1 10.529 -20.571 16.229 1.00 21.78 C HETATM 5 SD MHO A 1 9.242 -21.513 15.528 1.00 29.33 S HETATM 6 CE MHO A 1 9.153 -21.174 13.917 1.00 24.89 C HETATM 7 C MHO A 1 13.058 -20.264 17.832 1.00 16.73 C HETATM 8 O MHO A 1 13.367 -21.032 18.777 1.00 17.05 O HETATM 9 OD1 MHO A 1 8.038 -21.274 16.256 1.00 27.54 O