HEADER HYDROLASE 28-JUL-11 3ZWD TITLE THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, IN TITLE 2 COMPLEX WITH THE ALPHA-MANNOSYLGLYCERATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PKK223-3 KEYWDS HYDROLASE, HALOALKANOID ACID DEHALOGENASE-LIKE PHOSPHATASE, HAD-LIKE KEYWDS 2 PHOSPHATASE, CRYSTALLOGRAPHIC SNAPSHOT EXPDTA X-RAY DIFFRACTION AUTHOR S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS REVDAT 4 20-DEC-23 3ZWD 1 HETSYN REVDAT 3 29-JUL-20 3ZWD 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 09-NOV-11 3ZWD 1 JRNL REVDAT 1 19-OCT-11 3ZWD 0 JRNL AUTH S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF JRNL TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB27: A NEW MEMBER OF THE HALOALKANOIC ACID JRNL TITL 4 DEHALOGENASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 50 9551 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21961705 JRNL DOI 10.1021/BI201171H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GONCALVES,A.M.ESTEVES,N.BORGES,H.SANTOS,P.M.MATIAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB27. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 390 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21393850 REMARK 1 DOI 10.1107/S1744309111002843 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.690 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 37742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7718 - 4.1270 0.95 3570 188 0.1614 0.2063 REMARK 3 2 4.1270 - 3.2772 0.97 3586 204 0.1521 0.2106 REMARK 3 3 3.2772 - 2.8634 0.97 3571 176 0.1595 0.1918 REMARK 3 4 2.8634 - 2.6018 0.99 3622 197 0.1644 0.2331 REMARK 3 5 2.6018 - 2.4154 0.99 3636 201 0.1554 0.2282 REMARK 3 6 2.4154 - 2.2731 1.00 3665 186 0.1507 0.1936 REMARK 3 7 2.2731 - 2.1593 1.00 3673 174 0.1583 0.2244 REMARK 3 8 2.1593 - 2.0653 1.00 3615 221 0.1626 0.2184 REMARK 3 9 2.0653 - 1.9858 0.99 3622 197 0.1882 0.2435 REMARK 3 10 1.9858 - 1.9173 0.89 3271 167 0.2203 0.2898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 64.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.36510 REMARK 3 B22 (A**2) : 3.09280 REMARK 3 B33 (A**2) : -8.45790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.87040 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4010 REMARK 3 ANGLE : 0.986 5452 REMARK 3 CHIRALITY : 0.063 599 REMARK 3 PLANARITY : 0.005 720 REMARK 3 DIHEDRAL : 13.274 1525 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:29) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8155 49.6019 -15.2028 REMARK 3 T TENSOR REMARK 3 T11: 0.5511 T22: 0.2774 REMARK 3 T33: 0.5436 T12: 0.0328 REMARK 3 T13: -0.0186 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.0282 L22: 0.4269 REMARK 3 L33: 2.1953 L12: -0.3971 REMARK 3 L13: -0.0295 L23: 0.5377 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.3848 S13: -1.1129 REMARK 3 S21: 0.2684 S22: -0.0253 S23: 0.4252 REMARK 3 S31: 1.4449 S32: -0.1059 S33: 0.0057 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 30:104) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6260 65.1906 -3.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1681 REMARK 3 T33: 0.2009 T12: -0.0059 REMARK 3 T13: -0.0013 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.3608 L22: 1.7977 REMARK 3 L33: 2.3630 L12: 0.3236 REMARK 3 L13: -0.1279 L23: -0.0461 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.2473 S13: -0.0988 REMARK 3 S21: 0.0192 S22: -0.0703 S23: -0.0811 REMARK 3 S31: -0.0579 S32: 0.3858 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 105:177) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0756 59.4188 5.1003 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2180 REMARK 3 T33: 0.2205 T12: -0.0430 REMARK 3 T13: -0.0007 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.6224 L22: 2.5926 REMARK 3 L33: 5.1007 L12: -0.0567 REMARK 3 L13: -0.0744 L23: -1.1780 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.0403 S13: -0.0681 REMARK 3 S21: -0.0581 S22: 0.0330 S23: 0.1934 REMARK 3 S31: 0.3092 S32: -0.5329 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 178:251) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4193 58.0722 -20.2761 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.1945 REMARK 3 T33: 0.2930 T12: -0.0396 REMARK 3 T13: -0.0636 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 3.0433 L22: 3.2093 REMARK 3 L33: 3.2153 L12: -0.5759 REMARK 3 L13: 1.4785 L23: 0.3538 REMARK 3 S TENSOR REMARK 3 S11: 0.1360 S12: 0.1916 S13: -0.5186 REMARK 3 S21: -0.3253 S22: 0.1586 S23: 0.3651 REMARK 3 S31: 0.5397 S32: -0.1379 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:64) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3566 54.2082 43.4659 REMARK 3 T TENSOR REMARK 3 T11: 0.3708 T22: 0.2384 REMARK 3 T33: 0.2159 T12: -0.0258 REMARK 3 T13: -0.0193 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 1.3781 L22: 0.5030 REMARK 3 L33: 2.1261 L12: -0.0770 REMARK 3 L13: -0.4243 L23: -0.7060 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: -0.2056 S13: 0.3286 REMARK 3 S21: 0.2563 S22: -0.0467 S23: -0.0888 REMARK 3 S31: -0.3940 S32: 0.1932 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 65:143) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0193 46.9577 27.8901 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.2118 REMARK 3 T33: 0.1966 T12: 0.0008 REMARK 3 T13: -0.0329 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6492 L22: 2.0516 REMARK 3 L33: 2.9761 L12: 0.2801 REMARK 3 L13: -0.3914 L23: -0.2347 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: -0.0214 S13: -0.0165 REMARK 3 S21: 0.1244 S22: 0.0147 S23: -0.1502 REMARK 3 S31: -0.0190 S32: 0.4154 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 144:175) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8228 46.3885 21.3915 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.2117 REMARK 3 T33: 0.2530 T12: -0.0114 REMARK 3 T13: -0.0127 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.2481 L22: 1.1729 REMARK 3 L33: 1.8971 L12: 0.3976 REMARK 3 L13: -0.2933 L23: 1.3062 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: 0.1245 S13: 0.1504 REMARK 3 S21: 0.0995 S22: 0.0779 S23: 0.4342 REMARK 3 S31: -0.1076 S32: -0.3270 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 176:252) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7766 49.6259 45.3848 REMARK 3 T TENSOR REMARK 3 T11: 0.3672 T22: 0.2917 REMARK 3 T33: 0.1967 T12: -0.0111 REMARK 3 T13: 0.0416 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.7645 L22: 1.7538 REMARK 3 L33: 2.3279 L12: 0.1451 REMARK 3 L13: -0.4655 L23: 0.2674 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: -0.2371 S13: 0.0981 REMARK 3 S21: 0.3348 S22: 0.0466 S23: 0.2782 REMARK 3 S31: 0.0836 S32: -0.3927 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290049216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95350 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37993 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZTY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REFERENCE 1, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.11950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 253 REMARK 465 ARG A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 ARG B 253 REMARK 465 ARG B 254 REMARK 465 GLY B 255 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 PRO B 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 75 CZ NH1 NH2 REMARK 470 ASP A 223 CG OD1 OD2 REMARK 470 SER A 252 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -70.02 -56.28 REMARK 500 ASP A 8 -95.51 25.97 REMARK 500 LEU A 12 -78.81 -85.24 REMARK 500 ASP A 13 -81.39 50.84 REMARK 500 ARG A 15 -60.45 67.75 REMARK 500 GLU A 17 -105.94 69.95 REMARK 500 LEU A 18 117.90 97.61 REMARK 500 TYR A 137 -45.47 -134.27 REMARK 500 VAL A 219 72.06 -114.29 REMARK 500 LEU B 7 -77.29 -99.12 REMARK 500 THR B 10 -72.02 -123.79 REMARK 500 LYS B 77 73.09 -155.27 REMARK 500 TYR B 137 -49.87 -132.81 REMARK 500 ASP B 202 -9.66 -140.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2010 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2075 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH B2089 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B2090 DISTANCE = 6.26 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 2-O-ALPHA-MANNOSYL-D-GLYCERATE (DMG): REFERENCE ENTRY 2M8 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD2 REMARK 620 2 ASP B 8 O 86.7 REMARK 620 3 GLY B 165 O 122.4 139.9 REMARK 620 4 ASP B 202 OD1 74.3 64.8 143.9 REMARK 620 5 SER B 203 OG 76.6 150.0 69.4 86.5 REMARK 620 6 HOH B2010 O 163.8 77.1 72.4 97.4 117.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZWK RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE METAVANADATE REMARK 900 RELATED ID: 3ZUP RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZTY RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF THE GADOLINIUM DERIVATIVE OF MPGP, REMARK 900 THE MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 900 THERMOPHILUS HB27 REMARK 900 RELATED ID: 3ZTW RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF APO-MPGP, THE MANNOSYL -3- REMARK 900 PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS HB27 IN ITS REMARK 900 APO-FORM REMARK 900 RELATED ID: 3ZU6 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZW7 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND METAPHOSPHATE. DBREF 3ZWD A 1 259 UNP Q72K29 Q72K29_THET2 1 259 DBREF 3ZWD B 1 259 UNP Q72K29 Q72K29_THET2 1 259 SEQRES 1 A 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 A 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 A 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 A 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 A 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 A 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 A 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 A 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 A 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 A 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 A 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 A 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 A 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 A 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 A 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 A 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 A 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 A 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 A 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 A 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO SEQRES 1 B 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 B 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 B 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 B 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 B 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 B 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 B 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 B 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 B 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 B 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 B 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 B 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 B 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 B 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 B 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 B 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 B 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 B 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 B 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 B 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO HET 2M8 A 262 18 HET MG B 260 1 HET 2M8 B 262 18 HETNAM 2M8 (2R)-3-HYDROXY-2-(ALPHA-D-MANNOPYRANOSYLOXY)PROPANOIC HETNAM 2 2M8 ACID HETNAM MG MAGNESIUM ION HETSYN 2M8 2-O-ALPHA-MANNOSYL-D-GLYCERATE; (2R)-3-HYDROXY-2- HETSYN 2 2M8 (ALPHA-D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 3 2M8 (D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 4 2M8 (MANNOSYLOXY)PROPANOIC ACID FORMUL 3 2M8 2(C9 H16 O9) FORMUL 4 MG MG 2+ FORMUL 6 HOH *435(H2 O) HELIX 1 1 ASP A 6 LEU A 11 1 6 HELIX 2 2 LEU A 18 LEU A 31 1 14 HELIX 3 3 THR A 42 LEU A 49 1 8 HELIX 4 4 GLU A 58 GLY A 60 5 3 HELIX 5 5 PRO A 88 GLY A 104 1 17 HELIX 6 6 THR A 114 GLY A 123 1 10 HELIX 7 7 SER A 125 ALA A 134 1 10 HELIX 8 8 GLU A 147 VAL A 158 1 12 HELIX 9 9 ASP A 176 LEU A 187 1 12 HELIX 10 10 ASP A 206 VAL A 213 1 8 HELIX 11 11 PRO A 234 LEU A 247 1 14 HELIX 12 12 LEU A 248 LEU A 251 5 4 HELIX 13 13 LEU B 7 LEU B 12 1 6 HELIX 14 14 LEU B 18 PRO B 20 5 3 HELIX 15 15 ALA B 21 LEU B 31 1 11 HELIX 16 16 THR B 42 LEU B 49 1 8 HELIX 17 17 GLU B 58 GLY B 60 5 3 HELIX 18 18 PRO B 88 GLY B 104 1 17 HELIX 19 19 THR B 114 GLY B 123 1 10 HELIX 20 20 SER B 125 ALA B 134 1 10 HELIX 21 21 CYS B 144 GLU B 146 5 3 HELIX 22 22 GLU B 147 VAL B 158 1 12 HELIX 23 23 ASP B 176 LEU B 187 1 12 HELIX 24 24 ASP B 190 ARG B 195 1 6 HELIX 25 25 SER B 203 ASN B 205 5 3 HELIX 26 26 ASP B 206 ALA B 212 1 7 HELIX 27 27 PRO B 234 TYR B 246 1 13 HELIX 28 28 LEU B 247 SER B 252 1 6 SHEET 1 AA 4 VAL A 35 PRO A 37 0 SHEET 2 AA 4 ILE A 2 THR A 5 1 O VAL A 3 N VAL A 36 SHEET 3 AA 4 ALA A 197 GLY A 201 1 O VAL A 198 N PHE A 4 SHEET 4 AA 4 LEU A 215 TYR A 218 1 O LEU A 215 N GLY A 199 SHEET 1 AB 4 PHE A 55 VAL A 57 0 SHEET 2 AB 4 GLY A 62 PRO A 66 -1 O GLY A 62 N VAL A 57 SHEET 3 AB 4 TYR A 80 SER A 84 -1 O ARG A 81 N LEU A 65 SHEET 4 AB 4 ARG A 75 LYS A 77 -1 O ARG A 75 N VAL A 82 SHEET 1 AC 4 LEU A 108 GLY A 109 0 SHEET 2 AC 4 GLU A 139 VAL A 142 -1 O VAL A 142 N LEU A 108 SHEET 3 AC 4 TYR A 169 ALA A 172 -1 O TYR A 169 N LEU A 141 SHEET 4 AC 4 GLU A 161 HIS A 164 -1 O GLU A 161 N ALA A 172 SHEET 1 BA 5 VAL B 35 PRO B 37 0 SHEET 2 BA 5 ILE B 2 THR B 5 1 O VAL B 3 N VAL B 36 SHEET 3 BA 5 ALA B 197 GLY B 201 1 O VAL B 198 N PHE B 4 SHEET 4 BA 5 LEU B 215 TYR B 218 1 O LEU B 215 N GLY B 199 SHEET 5 BA 5 LEU B 229 ALA B 230 1 O LEU B 229 N TYR B 218 SHEET 1 BB 4 PHE B 55 VAL B 57 0 SHEET 2 BB 4 GLY B 62 PRO B 66 -1 O GLY B 62 N VAL B 57 SHEET 3 BB 4 TYR B 80 SER B 84 -1 O ARG B 81 N LEU B 65 SHEET 4 BB 4 ARG B 75 LYS B 77 -1 O ARG B 75 N VAL B 82 SHEET 1 BC 4 LEU B 108 GLY B 109 0 SHEET 2 BC 4 GLU B 139 VAL B 142 -1 O VAL B 142 N LEU B 108 SHEET 3 BC 4 TYR B 169 ALA B 172 -1 O TYR B 169 N LEU B 141 SHEET 4 BC 4 GLU B 161 HIS B 164 -1 O GLU B 161 N ALA B 172 SSBOND 1 CYS A 144 CYS B 144 1555 1555 2.03 LINK OD2 ASP B 6 MG MG B 260 1555 1555 2.98 LINK O ASP B 8 MG MG B 260 1555 1555 2.70 LINK O GLY B 165 MG MG B 260 1555 1555 2.73 LINK OD1 ASP B 202 MG MG B 260 1555 1555 2.85 LINK OG SER B 203 MG MG B 260 1555 1555 2.75 LINK MG MG B 260 O HOH B2010 1555 1555 2.77 CISPEP 1 PRO A 53 PRO A 54 0 5.64 CISPEP 2 PRO B 53 PRO B 54 0 3.86 CRYST1 39.868 70.239 91.783 90.00 95.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025083 0.000000 0.002495 0.00000 SCALE2 0.000000 0.014237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010949 0.00000 MTRIX1 1 0.813630 0.041190 0.579920 -6.08105 1 MTRIX2 1 -0.000560 -0.997430 0.071620 109.40703 1 MTRIX3 1 0.581380 -0.058590 -0.811520 15.61256 1