HEADER ELECTRON TRANSPORT 31-JUL-11 3ZWI TITLE RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: TITLE 2 CARBON MONOOXIDE BOUND AT 1.25 A:UNRESTRAINT REFINEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER XYLOSOXIDANS; SOURCE 3 ORGANISM_TAXID: 85698; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PEC86 KEYWDS ELECTRON TRANSPORT, HAEMOPROTEIN, 4-HELIX BUNDLE EXPDTA X-RAY DIFFRACTION AUTHOR S.ANTONYUK,N.RUSTAGE,R.R.EADY,S.S.HASNAIN REVDAT 4 20-DEC-23 3ZWI 1 HETSYN REVDAT 3 29-JUL-20 3ZWI 1 REMARK SITE REVDAT 2 11-MAR-20 3ZWI 1 REMARK SEQRES LINK REVDAT 1 08-AUG-12 3ZWI 0 JRNL AUTH S.V.ANTONYUK,N.RUSTAGE,C.A.PETERSEN,J.L.ARNST,D.J.HEYES, JRNL AUTH 2 R.SHARMA,N.G.BERRY,N.S.SCRUTTON,R.R.EADY,C.R.ANDREW, JRNL AUTH 3 S.S.HASNAIN JRNL TITL CARBON MONOXIDE POISONING IS PREVENTED BY THE ENERGY COSTS JRNL TITL 2 OF CONFORMATIONAL CHANGES IN GAS-BINDING HAEMPROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 15780 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21900609 JRNL DOI 10.1073/PNAS.1109051108 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.142 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.140 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2163 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 43009 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.135 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.133 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1875 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 37466 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 949 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1248.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 913.50 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 47 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 269 REMARK 3 NUMBER OF RESTRAINTS : 0 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 ANGLE DISTANCES (A) : 0.035 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1290049226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 36.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2YLD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, HEPES BUFFER., PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.57600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.28800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.43200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.14400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 150.72000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 120.57600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 60.28800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.14400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.43200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 150.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.43200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2244 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEC A 128 C CMO A 130 1.70 REMARK 500 FE HEC A 128 C CMO A 130 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 16 CB - CG - CD1 ANGL. DEV. = 20.6 DEGREES REMARK 500 LEU A 16 CB - CG - CD1 ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU A 16 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 MET A 19 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 69 CD - NE - CZ ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE A 86 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE A 86 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 CYS A 116 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2045 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A2232 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2254 DISTANCE = 6.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 128 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HEC A 128 NA 93.0 REMARK 620 3 HEC A 128 NB 90.8 89.9 REMARK 620 4 HEC A 128 NC 89.8 177.1 90.4 REMARK 620 5 HEC A 128 ND 92.6 90.3 176.6 89.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YL3 RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE REMARK 900 BOUND L16G VARIANT AT 1.04 A RESOLUTION REMARK 900 RELATED ID: 2XLH RELATED DB: PDB REMARK 900 REDUCED STRUCTURE OF R124A MUTANT OF CYTOCHROME C' FROM ALCALIGENES REMARK 900 XYLOSOXIDANS REMARK 900 RELATED ID: 2XM0 RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124K REMARK 900 VARIANT REMARK 900 RELATED ID: 1CGO RELATED DB: PDB REMARK 900 CYTOCHROME C' REMARK 900 RELATED ID: 2YKZ RELATED DB: PDB REMARK 900 RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS REMARK 900 AT 0.84 A RESOLUTION: RESTRAINED REFINEMENT REMARK 900 RELATED ID: 3ZQY RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE REMARK 900 BOUND L16A VARIANT AT 1.03 A RESOLUTION- NON-RESTRAINT REFINEMENT REMARK 900 RELATED ID: 2YLI RELATED DB: PDB REMARK 900 RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS REMARK 900 IN ITS FERROUS FORM AT 1.45 A REMARK 900 RELATED ID: 2XM4 RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124E REMARK 900 VARIANT REMARK 900 RELATED ID: 1E86 RELATED DB: PDB REMARK 900 CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS - REDUCED STRUCTURE REMARK 900 WITH CO BOUND TO DISTAL SIDE OF HEME REMARK 900 RELATED ID: 2XL6 RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124A REMARK 900 VARIANT WITH BOUND NO REMARK 900 RELATED ID: 2YL0 RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: AS ISOLATED L16A REMARK 900 VARIANT AT 0.95 A RESOLUTION REMARK 900 RELATED ID: 1CGN RELATED DB: PDB REMARK 900 CYTOCHROME C' REMARK 900 RELATED ID: 1E85 RELATED DB: PDB REMARK 900 CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS - REDUCED STRUCTURE REMARK 900 WITH NO BOUND TO PROXIMAL SIDE OF HEME REMARK 900 RELATED ID: 2YLG RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: ASCORBATE AND REMARK 900 CARBON MONOOXIDE BOUND L16A VARIANT AT 1 .05 A RESOLUTION REMARK 900 RELATED ID: 2XLM RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS REMARK 900 RECOMBINANT NATIVE WITH BOUND NO REMARK 900 RELATED ID: 2YL1 RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE REMARK 900 BOUND L16A VARIANT AT 1.03 A RESOLUTION - RESTRAINT REFINEMENT REMARK 900 RELATED ID: 3ZTM RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: AS ISOLATED L16G REMARK 900 VARIANT AT 1.04 A RESOLUTION : UNRESTRAINT REFINEMENT REMARK 900 RELATED ID: 2YLD RELATED DB: PDB REMARK 900 RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: REMARK 900 CARBON MONOOXIDE BOUND AT 1.25 A REMARK 900 RELATED ID: 2XLD RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124Q REMARK 900 VARIANT REMARK 900 RELATED ID: 2XLE RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124K REMARK 900 VARIANT WITH BOUND NO REMARK 900 RELATED ID: 3ZTZ RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE REMARK 900 BOUND L16G VARIANT AT 1.04 A RESOLUTION: UNRESTRAINT REFINEMENT REMARK 900 RELATED ID: 2YL7 RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: AS ISOLATED L16G REMARK 900 VARIANT AT 0.9 A RESOLUTION - RESTRAINT REFINEMENT REMARK 900 RELATED ID: 1E83 RELATED DB: PDB REMARK 900 CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS - OXIDIZED STRUCTURE REMARK 900 RELATED ID: 3ZQV RELATED DB: PDB REMARK 900 RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS REMARK 900 AT 0.84 A RESOLUTION: NON-RESTRAINED REFINEMENT REMARK 900 RELATED ID: 2XL8 RELATED DB: PDB REMARK 900 REDUCED STRUCTURE OF R124F MUTANT OF CYTOCHROME C' FROM ALCALIGENES REMARK 900 XYLOSOXIDANS REMARK 900 RELATED ID: 2XLW RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124Q REMARK 900 VARIANT WITH BOUND NO REMARK 900 RELATED ID: 1E84 RELATED DB: PDB REMARK 900 CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS - REDUCED STRUCTURE REMARK 900 RELATED ID: 2XLV RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124F REMARK 900 VARIANT WITH BOUND NO REMARK 900 RELATED ID: 2XLO RELATED DB: PDB REMARK 900 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: FERROUS R124E REMARK 900 VARIANT WITH BOUND NO DBREF 3ZWI A 1 127 UNP P00138 CYCP_ALCXX 1 127 SEQRES 1 A 127 PCA PHE ALA LYS PRO GLU ASP ALA VAL LYS TYR ARG GLN SEQRES 2 A 127 SER ALA LEU THR LEU MET ALA SER HIS PHE GLY ARG MET SEQRES 3 A 127 THR PRO VAL VAL LYS GLY GLN ALA PRO TYR ASP ALA ALA SEQRES 4 A 127 GLN ILE LYS ALA ASN VAL GLU VAL LEU LYS THR LEU SER SEQRES 5 A 127 ALA LEU PRO TRP ALA ALA PHE GLY PRO GLY THR GLU GLY SEQRES 6 A 127 GLY ASP ALA ARG PRO GLU ILE TRP SER ASP ALA ALA SER SEQRES 7 A 127 PHE LYS GLN LYS GLN GLN ALA PHE GLN ASP ASN ILE VAL SEQRES 8 A 127 LYS LEU SER ALA ALA ALA ASP ALA GLY ASP LEU ASP LYS SEQRES 9 A 127 LEU ARG ALA ALA PHE GLY ASP VAL GLY ALA SER CYS LYS SEQRES 10 A 127 ALA CYS HIS ASP ALA TYR ARG LYS LYS LYS MODRES 3ZWI PCA A 1 GLU PYROGLUTAMIC ACID HET PCA A 1 8 HET HEC A 128 49 HET CMO A 130 4 HET SO4 A 131 5 HET ASC A 156 12 HETNAM PCA PYROGLUTAMIC ACID HETNAM HEC HEME C HETNAM CMO CARBON MONOXIDE HETNAM SO4 SULFATE ION HETNAM ASC ASCORBIC ACID HETSYN ASC VITAMIN C FORMUL 1 PCA C5 H7 N O3 FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 CMO C O FORMUL 4 SO4 O4 S 2- FORMUL 5 ASC C6 H8 O6 FORMUL 6 HOH *256(H2 O) HELIX 1 1 LYS A 4 ARG A 25 1 22 HELIX 2 2 MET A 26 LYS A 31 1 6 HELIX 3 3 ASP A 37 ALA A 53 1 17 HELIX 4 4 LEU A 54 PHE A 59 5 6 HELIX 5 5 PRO A 70 ASP A 75 1 6 HELIX 6 6 ASP A 75 GLY A 100 1 26 HELIX 7 7 ASP A 101 ARG A 124 1 24 LINK C PCA A 1 N PHE A 2 1555 1555 1.33 LINK SG CYS A 116 CAB HEC A 128 1555 1555 1.81 LINK SG CYS A 119 CAC HEC A 128 1555 1555 1.88 LINK NE2 HIS A 120 FE HEC A 128 1555 1555 2.01 CRYST1 53.914 53.914 180.864 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018548 0.010709 0.000000 0.00000 SCALE2 0.000000 0.021417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005529 0.00000 HETATM 1 N PCA A 1 -8.508 29.430 32.198 1.00 15.42 N ANISOU 1 N PCA A 1 2437 2433 989 -225 -330 89 N HETATM 2 CA PCA A 1 -9.343 29.688 33.379 1.00 15.26 C ANISOU 2 CA PCA A 1 2517 2254 1028 -293 -206 62 C HETATM 3 CB PCA A 1 -8.613 28.837 34.442 1.00 16.89 C ANISOU 3 CB PCA A 1 3035 2339 1044 -176 -119 182 C HETATM 4 CG PCA A 1 -7.168 28.791 33.910 1.00 17.14 C ANISOU 4 CG PCA A 1 2700 2676 1136 -309 -467 415 C HETATM 5 CD PCA A 1 -7.315 28.991 32.547 1.00 15.06 C ANISOU 5 CD PCA A 1 2471 2273 979 -156 -383 14 C HETATM 6 OE PCA A 1 -6.452 28.801 31.687 1.00 16.88 O ANISOU 6 OE PCA A 1 2497 2704 1214 -83 -432 -49 O HETATM 7 C PCA A 1 -9.315 31.162 33.797 1.00 15.52 C ANISOU 7 C PCA A 1 2423 2271 1204 -315 -48 69 C HETATM 8 O PCA A 1 -9.736 31.491 34.917 1.00 18.43 O ANISOU 8 O PCA A 1 3134 2620 1247 -9 99 -56 O