HEADER HYDROLASE 01-AUG-11 3ZWK TITLE THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, IN TITLE 2 COMPLEX WITH THE METAVANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS HYDROLASE, HALOALKANOID ACID DEHALOGENASE-LIKE PHOSPHATASE, HAD-LIKE KEYWDS 2 PHOSPHATASE, CRYSTALLOGRAPHIC SNAPSHOT EXPDTA X-RAY DIFFRACTION AUTHOR S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS REVDAT 3 20-DEC-23 3ZWK 1 REMARK LINK REVDAT 2 09-NOV-11 3ZWK 1 JRNL REVDAT 1 19-OCT-11 3ZWK 0 JRNL AUTH S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF JRNL TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB27: A NEW MEMBER OF THE HALOALKANOIC ACID JRNL TITL 4 DEHALOGENASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 50 9551 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21961705 JRNL DOI 10.1021/BI201171H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GONCALVES,A.M.ESTEVES,N.BORGES,H.SANTOS,P.M.MATIAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB27. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 390 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21393850 REMARK 1 DOI 10.1107/S1744309111002843 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 30231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2872 - 4.5214 0.98 2911 151 0.1618 0.2076 REMARK 3 2 4.5214 - 3.5892 0.99 2893 160 0.1355 0.1838 REMARK 3 3 3.5892 - 3.1356 0.99 2886 158 0.1534 0.2149 REMARK 3 4 3.1356 - 2.8490 1.00 2887 141 0.1544 0.2048 REMARK 3 5 2.8490 - 2.6448 1.00 2882 155 0.1516 0.2133 REMARK 3 6 2.6448 - 2.4889 1.00 2863 160 0.1535 0.1999 REMARK 3 7 2.4889 - 2.3642 1.00 2896 157 0.1602 0.2364 REMARK 3 8 2.3642 - 2.2613 1.00 2910 138 0.1705 0.2259 REMARK 3 9 2.2613 - 2.1743 1.00 2882 141 0.1770 0.2560 REMARK 3 10 2.1743 - 2.0992 0.95 2700 160 0.1979 0.2755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 54.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37100 REMARK 3 B22 (A**2) : 0.81760 REMARK 3 B33 (A**2) : -2.18860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.93460 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4005 REMARK 3 ANGLE : 0.979 5444 REMARK 3 CHIRALITY : 0.062 590 REMARK 3 PLANARITY : 0.005 726 REMARK 3 DIHEDRAL : 13.457 1523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:35) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8248 50.6257 -17.5289 REMARK 3 T TENSOR REMARK 3 T11: 0.4597 T22: 0.2601 REMARK 3 T33: 0.4336 T12: 0.0465 REMARK 3 T13: 0.0327 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 2.2729 L22: 0.2228 REMARK 3 L33: 3.9699 L12: 0.5449 REMARK 3 L13: -1.2631 L23: -0.5479 REMARK 3 S TENSOR REMARK 3 S11: -0.3358 S12: -0.2982 S13: -0.7748 REMARK 3 S21: -0.2442 S22: 0.3113 S23: -0.3160 REMARK 3 S31: 1.3095 S32: 0.1767 S33: 0.0623 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 36:146) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9821 61.8156 1.5232 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.1678 REMARK 3 T33: 0.2064 T12: 0.0236 REMARK 3 T13: -0.0137 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.4711 L22: 0.9884 REMARK 3 L33: 1.7095 L12: 0.5852 REMARK 3 L13: -0.6229 L23: -0.4875 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.1454 S13: -0.0214 REMARK 3 S21: -0.0102 S22: -0.0774 S23: -0.1611 REMARK 3 S31: 0.0498 S32: 0.1369 S33: 0.1080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 147:175) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9636 64.2447 1.8176 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.2834 REMARK 3 T33: 0.1961 T12: 0.0345 REMARK 3 T13: -0.0197 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.2808 L22: 0.9796 REMARK 3 L33: 2.3357 L12: 0.8092 REMARK 3 L13: -0.0807 L23: -0.5241 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.3854 S13: 0.2734 REMARK 3 S21: -0.1496 S22: 0.1212 S23: 0.3161 REMARK 3 S31: 0.1863 S32: -0.6224 S33: -0.1277 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 176:252) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2538 58.8548 -21.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.2018 T22: 0.1733 REMARK 3 T33: 0.1853 T12: -0.0341 REMARK 3 T13: -0.0357 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.2242 L22: 1.9286 REMARK 3 L33: 1.9479 L12: -0.3697 REMARK 3 L13: 0.8476 L23: -0.5543 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: 0.2626 S13: -0.1363 REMARK 3 S21: -0.3176 S22: 0.1681 S23: 0.2135 REMARK 3 S31: 0.3117 S32: -0.1300 S33: -0.1643 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:29) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9318 60.0664 45.4135 REMARK 3 T TENSOR REMARK 3 T11: 0.8982 T22: 0.2085 REMARK 3 T33: 0.3348 T12: -0.0568 REMARK 3 T13: 0.0863 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.4436 L22: 0.2358 REMARK 3 L33: 2.5652 L12: -0.1995 REMARK 3 L13: -0.3899 L23: -0.6193 REMARK 3 S TENSOR REMARK 3 S11: 0.2084 S12: 0.2262 S13: 0.7329 REMARK 3 S21: 0.5269 S22: 0.0503 S23: 0.0505 REMARK 3 S31: -1.3574 S32: -0.2399 S33: -0.1940 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 30:142) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5020 48.0616 31.9657 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.2098 REMARK 3 T33: 0.1599 T12: -0.0004 REMARK 3 T13: -0.0369 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.5138 L22: 1.4819 REMARK 3 L33: 1.7826 L12: 0.0029 REMARK 3 L13: -0.3709 L23: -0.0175 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.0669 S13: -0.0675 REMARK 3 S21: 0.3440 S22: 0.0109 S23: -0.1214 REMARK 3 S31: -0.0136 S32: 0.3567 S33: 0.0139 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 143:176) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7573 46.2042 21.4207 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.1918 REMARK 3 T33: 0.2664 T12: 0.0230 REMARK 3 T13: 0.0183 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.6981 L22: 1.6722 REMARK 3 L33: 1.4425 L12: 0.1596 REMARK 3 L13: -0.7522 L23: 0.1298 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0047 S13: 0.1170 REMARK 3 S21: 0.2094 S22: 0.1198 S23: 0.6250 REMARK 3 S31: -0.0075 S32: -0.5156 S33: -0.0535 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 177:252) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0183 50.7042 45.6625 REMARK 3 T TENSOR REMARK 3 T11: 0.5430 T22: 0.2539 REMARK 3 T33: 0.1689 T12: 0.0442 REMARK 3 T13: 0.0964 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 1.5129 L22: 1.2371 REMARK 3 L33: 0.6436 L12: 0.7993 REMARK 3 L13: -0.2341 L23: 0.2698 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: 0.1892 S13: 0.0279 REMARK 3 S21: 0.5762 S22: 0.1219 S23: 0.4827 REMARK 3 S31: 0.0167 S32: -0.4042 S33: -0.0750 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZTY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.68200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 ARG B 254 REMARK 465 GLY B 255 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 PRO B 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 116 CD OE1 OE2 REMARK 470 ASP A 223 CG OD1 OD2 REMARK 470 ARG A 253 CA C O CB CG CD NE REMARK 470 ARG A 253 CZ NH1 NH2 REMARK 470 ARG B 75 CZ NH1 NH2 REMARK 470 GLU B 149 CD OE1 OE2 REMARK 470 ARG B 253 CA C O CB CG CD NE REMARK 470 ARG B 253 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -76.47 -93.83 REMARK 500 THR A 10 -72.36 -115.98 REMARK 500 TYR A 137 -53.56 -129.85 REMARK 500 LEU B 7 -75.02 -99.01 REMARK 500 THR B 10 -70.02 -117.19 REMARK 500 GLU B 17 -71.08 -117.91 REMARK 500 LEU B 18 -44.37 163.82 REMARK 500 TYR B 137 -51.74 -133.26 REMARK 500 ARG B 167 -37.50 -130.04 REMARK 500 ALA B 172 -179.76 -170.19 REMARK 500 ASP B 202 -3.65 -146.24 REMARK 500 ASN B 205 0.26 -68.32 REMARK 500 GLU B 226 99.79 -32.99 REMARK 500 SER B 252 15.77 -143.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2014 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A2031 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B2115 DISTANCE = 6.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD2 REMARK 620 2 ASP A 8 O 79.3 REMARK 620 3 ASP A 202 OD1 71.6 82.1 REMARK 620 4 HOH A2007 O 88.3 167.4 91.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD2 REMARK 620 2 ASP B 8 O 106.6 REMARK 620 3 ASP B 202 OD1 74.6 95.0 REMARK 620 4 VN3 B 261 O3 119.2 98.0 156.9 REMARK 620 5 HOH B2003 O 59.2 165.1 77.5 93.5 REMARK 620 6 HOH B2005 O 155.1 90.3 86.0 74.9 101.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VN3 B 261 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD1 REMARK 620 2 VN3 B 261 O1 82.8 REMARK 620 3 VN3 B 261 O2 78.7 118.7 REMARK 620 4 VN3 B 261 O3 127.9 118.2 119.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VN3 B 261 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZUP RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZTY RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF THE GADOLINIUM DERIVATIVE OF MPGP, REMARK 900 THE MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 900 THERMOPHILUS HB27 REMARK 900 RELATED ID: 3ZTW RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF APO-MPGP, THE MANNOSYL -3- REMARK 900 PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS HB27 IN ITS REMARK 900 APO-FORM REMARK 900 RELATED ID: 3ZU6 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZW7 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND METAPHOSPHATE. REMARK 900 RELATED ID: 3ZWD RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE. DBREF 3ZWK A 1 259 UNP Q72K29 Q72K29_THET2 1 259 DBREF 3ZWK B 1 259 UNP Q72K29 Q72K29_THET2 1 259 SEQRES 1 A 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 A 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 A 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 A 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 A 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 A 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 A 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 A 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 A 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 A 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 A 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 A 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 A 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 A 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 A 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 A 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 A 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 A 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 A 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 A 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO SEQRES 1 B 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 B 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 B 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 B 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 B 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 B 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 B 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 B 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 B 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 B 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 B 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 B 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 B 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 B 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 B 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 B 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 B 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 B 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 B 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 B 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO HET MG A 260 1 HET MG B 260 1 HET VN3 B 261 4 HETNAM MG MAGNESIUM ION HETNAM VN3 VANADATE ION HETSYN VN3 METAVANADATE FORMUL 3 MG 2(MG 2+) FORMUL 5 VN3 O3 V 1- FORMUL 6 HOH *427(H2 O) HELIX 1 1 PRO A 20 LEU A 31 1 12 HELIX 2 2 THR A 42 LEU A 49 1 8 HELIX 3 3 GLU A 58 GLY A 60 5 3 HELIX 4 4 PRO A 88 GLY A 104 1 17 HELIX 5 5 TYR A 110 ASP A 112 5 3 HELIX 6 6 THR A 114 GLY A 123 1 10 HELIX 7 7 SER A 125 LYS A 133 1 9 HELIX 8 8 CYS A 144 GLU A 146 5 3 HELIX 9 9 GLU A 147 VAL A 158 1 12 HELIX 10 10 ASP A 176 LEU A 187 1 12 HELIX 11 11 ASP A 190 ARG A 195 1 6 HELIX 12 12 SER A 203 ASN A 205 5 3 HELIX 13 13 ASP A 206 VAL A 213 1 8 HELIX 14 14 PRO A 234 LEU A 247 1 14 HELIX 15 15 LEU A 248 SER A 252 5 5 HELIX 16 16 PRO B 20 LEU B 31 1 12 HELIX 17 17 THR B 42 LEU B 49 1 8 HELIX 18 18 GLU B 58 GLY B 60 5 3 HELIX 19 19 PRO B 88 GLY B 104 1 17 HELIX 20 20 TYR B 110 ASP B 112 5 3 HELIX 21 21 THR B 114 GLY B 123 1 10 HELIX 22 22 SER B 125 LYS B 133 1 9 HELIX 23 23 CYS B 144 GLU B 146 5 3 HELIX 24 24 GLU B 147 VAL B 158 1 12 HELIX 25 25 ASP B 176 LEU B 187 1 12 HELIX 26 26 ASP B 190 ARG B 195 1 6 HELIX 27 27 SER B 203 ASN B 205 5 3 HELIX 28 28 ASP B 206 VAL B 213 1 8 HELIX 29 29 PRO B 234 TYR B 246 1 13 HELIX 30 30 LEU B 247 LEU B 251 5 5 SHEET 1 AA 5 VAL A 35 PRO A 37 0 SHEET 2 AA 5 ILE A 2 THR A 5 1 O VAL A 3 N VAL A 36 SHEET 3 AA 5 ALA A 197 GLY A 201 1 O VAL A 198 N PHE A 4 SHEET 4 AA 5 LEU A 215 TYR A 218 1 O LEU A 215 N GLY A 199 SHEET 5 AA 5 LEU A 229 ALA A 230 1 O LEU A 229 N TYR A 218 SHEET 1 AB 4 PHE A 55 VAL A 57 0 SHEET 2 AB 4 GLY A 62 PRO A 66 -1 O GLY A 62 N VAL A 57 SHEET 3 AB 4 TYR A 80 SER A 84 -1 O ARG A 81 N LEU A 65 SHEET 4 AB 4 ARG A 75 LYS A 77 -1 O ARG A 75 N VAL A 82 SHEET 1 AC 3 GLU A 139 LEU A 141 0 SHEET 2 AC 3 TYR A 169 ALA A 172 -1 O TYR A 169 N LEU A 141 SHEET 3 AC 3 GLU A 161 HIS A 164 -1 O GLU A 161 N ALA A 172 SHEET 1 BA 5 VAL B 35 PRO B 37 0 SHEET 2 BA 5 ILE B 2 THR B 5 1 O VAL B 3 N VAL B 36 SHEET 3 BA 5 ALA B 197 GLY B 201 1 O VAL B 198 N PHE B 4 SHEET 4 BA 5 LEU B 215 TYR B 218 1 O LEU B 215 N GLY B 199 SHEET 5 BA 5 LEU B 229 ALA B 230 1 O LEU B 229 N TYR B 218 SHEET 1 BB 4 PHE B 55 VAL B 57 0 SHEET 2 BB 4 GLY B 62 PRO B 66 -1 O GLY B 62 N VAL B 57 SHEET 3 BB 4 TYR B 80 SER B 84 -1 O ARG B 81 N LEU B 65 SHEET 4 BB 4 ARG B 75 PRO B 76 -1 O ARG B 75 N VAL B 82 SHEET 1 BC 3 GLU B 139 THR B 140 0 SHEET 2 BC 3 TYR B 169 ALA B 172 -1 O ALA B 171 N GLU B 139 SHEET 3 BC 3 GLU B 161 HIS B 164 -1 O GLU B 161 N ALA B 172 SSBOND 1 CYS A 144 CYS B 144 1555 1555 2.04 LINK OD2 ASP A 6 MG MG A 260 1555 1555 2.38 LINK O ASP A 8 MG MG A 260 1555 1555 2.57 LINK OD1 ASP A 202 MG MG A 260 1555 1555 2.60 LINK MG MG A 260 O HOH A2007 1555 1555 2.74 LINK OD2 ASP B 6 MG MG B 260 1555 1555 2.38 LINK OD1 ASP B 6 V VN3 B 261 1555 1555 2.48 LINK O ASP B 8 MG MG B 260 1555 1555 2.39 LINK OD1 ASP B 202 MG MG B 260 1555 1555 2.54 LINK MG MG B 260 O3 VN3 B 261 1555 1555 2.59 LINK MG MG B 260 O HOH B2003 1555 1555 2.57 LINK MG MG B 260 O HOH B2005 1555 1555 2.57 CISPEP 1 PRO A 53 PRO A 54 0 5.08 CISPEP 2 PRO B 53 PRO B 54 0 5.41 SITE 1 AC1 4 ASP A 6 ASP A 8 ASP A 202 HOH A2007 SITE 1 AC2 6 ASP B 6 ASP B 8 ASP B 202 VN3 B 261 SITE 2 AC2 6 HOH B2003 HOH B2005 SITE 1 AC3 11 ASP B 6 LEU B 7 ASP B 8 THR B 39 SITE 2 AC3 11 ALA B 40 LYS B 177 ASN B 205 MG B 260 SITE 3 AC3 11 HOH B2006 HOH B2133 HOH B2170 CRYST1 39.968 71.364 92.974 90.00 95.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025020 0.000000 0.002392 0.00000 SCALE2 0.000000 0.014013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010805 0.00000 MTRIX1 1 0.808560 0.009880 0.588330 -0.06381 1 MTRIX2 1 0.006670 -0.999950 0.007630 1.53611 1 MTRIX3 1 0.588370 -0.002240 -0.808590 0.12104 1