HEADER OXIDOREDUCTASE 04-AUG-11 3ZX1 TITLE MULTICOPPER OXIDASE FROM CAMPYLOBACTER JEJUNI: A METALLO-OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MULTICOPPER OXIDASE FROM CAMPYLOBACTER JEJUNI, MCOC; COMPND 5 EC: 1.10.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI; SOURCE 3 ORGANISM_TAXID: 32022; SOURCE 4 STRAIN: 81-176; SOURCE 5 VARIANT: CGUG 11284; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, LACCASE, METALLO-OXIDASE, CUPROUS OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.SILVA,P.DURAO,A.FILLAT,P.F.LINDLEY,L.O.MARTINS,I.BENTO REVDAT 3 20-DEC-23 3ZX1 1 REMARK LINK REVDAT 2 18-JAN-12 3ZX1 1 JRNL REVDAT 1 14-DEC-11 3ZX1 0 JRNL AUTH C.S.SILVA,P.DURAO,A.FILLAT,P.F.LINDLEY,L.O.MARTINS,I.BENTO JRNL TITL CRYSTAL STRUCTURE OF THE MULTICOPPER OXIDASE FROM THE JRNL TITL 2 PATHOGENIC BACTERIUM CAMPYLOBACTER JEJUNI CGUG11284: JRNL TITL 3 CHARACTERIZATION OF A METALLO-OXIDASE. JRNL REF METALLOMICS V. 4 37 2012 JRNL REFN ISSN 1756-5901 JRNL PMID 22127520 JRNL DOI 10.1039/C1MT00156F REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1656 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3820 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3942 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5282 ; 1.534 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 7.055 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;36.557 ;24.919 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 766 ;15.862 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2914 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1620 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2577 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 333 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.038 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.142 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2352 ; 0.811 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3808 ; 1.447 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 2.488 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1474 ; 4.031 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0596 2.0333 2.0149 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0400 REMARK 3 T33: 0.0195 T12: -0.0116 REMARK 3 T13: 0.0243 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.9257 L22: 1.4730 REMARK 3 L33: 1.2119 L12: -0.1806 REMARK 3 L13: -0.0254 L23: -0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: 0.0879 S13: 0.0872 REMARK 3 S21: -0.1024 S22: 0.0266 S23: -0.0715 REMARK 3 S31: -0.1417 S32: 0.1249 S33: -0.0792 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 513 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6228 0.7134 20.2287 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0567 REMARK 3 T33: 0.0163 T12: -0.0054 REMARK 3 T13: 0.0225 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.7806 L22: 1.4486 REMARK 3 L33: 1.5469 L12: 0.0046 REMARK 3 L13: -0.0092 L23: 0.4331 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: -0.1697 S13: 0.0647 REMARK 3 S21: 0.1709 S22: 0.0276 S23: 0.0026 REMARK 3 S31: -0.1059 S32: 0.0238 S33: -0.0951 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: POORLY-DEFINED REGION BETWEEN RESIDUES REMARK 3 38 AND 393 MODELED USING BUSTER-TNT. HYDROGENS HAVE BEEN ADDED REMARK 3 IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 3ZX1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.946500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: PDB ENTRY 2YXW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 3350, 0.2M MGCL2, 0.1M BIS REMARK 280 -TRIS PROPANE PH5.5, 3% DIOXANE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.43000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 33 REMARK 465 ASN A 34 REMARK 465 HIS A 35 REMARK 465 SER A 36 REMARK 465 ILE A 37 REMARK 465 ASN A 38 REMARK 465 HIS A 39 REMARK 465 ASP A 40 REMARK 465 LEU A 41 REMARK 465 ASP A 42 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 310 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 153 -5.94 -59.05 REMARK 500 ASP A 155 66.41 -117.50 REMARK 500 ASP A 172 7.66 59.31 REMARK 500 TYR A 185 -30.41 75.13 REMARK 500 ALA A 269 44.59 -102.58 REMARK 500 ALA A 272 5.12 -161.44 REMARK 500 THR A 289 -165.89 -128.09 REMARK 500 ALA A 308 -0.53 80.52 REMARK 500 MET A 384 -76.30 -48.23 REMARK 500 MET A 386 -38.75 96.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 OXY: O2 MOLECULE IS NOT INVOLVED IN COORDINATION, NOR COVALENT REMARK 600 BONDS WITH THE CU IONS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 139 NE2 REMARK 620 2 HIS A 442 NE2 147.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 141 ND1 REMARK 620 2 HIS A 180 NE2 102.2 REMARK 620 3 HIS A 496 NE2 107.8 119.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 439 ND1 REMARK 620 2 CYS A 495 SG 124.4 REMARK 620 3 HIS A 500 ND1 106.6 128.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 444 NE2 REMARK 620 2 HIS A 494 NE2 91.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1516 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONFLICTS ARE OWING TO MATCH TO RELATED STRAIN SEQUENCE. DBREF 3ZX1 A 33 513 UNP A3YJK9 A3YJK9_CAMJE 33 513 SEQADV 3ZX1 HIS A 84 UNP A3YJK9 ARG 84 CONFLICT SEQADV 3ZX1 GLU A 168 UNP A3YJK9 LYS 168 CONFLICT SEQADV 3ZX1 THR A 297 UNP A3YJK9 ALA 297 CONFLICT SEQADV 3ZX1 ARG A 409 UNP A3YJK9 GLY 409 CONFLICT SEQRES 1 A 481 LYS ASN HIS SER ILE ASN HIS ASP LEU ASP THR SER PHE SEQRES 2 A 481 ILE ASN PHE ALA PRO LYS ASN LEU LYS LEU LEU ASP PRO SEQRES 3 A 481 LYS GLN PHE PRO GLN GLY GLU ILE LEU LYS ALA LEU PRO SEQRES 4 A 481 LEU LEU LYS ASN GLU SER LYS GLU LYS ASN ILE PHE HIS SEQRES 5 A 481 ALA THR LEU GLU ILE LYS GLU ASN HIS ILE GLU LEU ILE SEQRES 6 A 481 LYS GLY LYS LYS THR LEU PHE TYR THR TYR ASN GLY LEU SEQRES 7 A 481 VAL PRO ALA PRO LYS ILE GLU VAL PHE GLU GLY ASP LYS SEQRES 8 A 481 LEU GLU ILE LEU VAL LYS ASN LYS LEU LYS GLU ALA THR SEQRES 9 A 481 THR ILE HIS TRP HIS GLY VAL PRO VAL PRO PRO ASP GLN SEQRES 10 A 481 ASP GLY SER PRO HIS ASP PRO ILE LEU ALA GLY GLU GLU SEQRES 11 A 481 ARG ILE TYR ARG PHE GLU ILE PRO GLN ASP SER ALA GLY SEQRES 12 A 481 THR TYR TRP TYR HIS PRO HIS PRO HIS TYR THR ALA SER SEQRES 13 A 481 LYS GLN VAL PHE MET GLY LEU ALA GLY ALA PHE VAL ILE SEQRES 14 A 481 LYS ALA LYS LYS ASP ALA LEU SER HIS LEU LYS GLU LYS SEQRES 15 A 481 ASP LEU MET ILE SER ASP LEU ARG LEU ASP GLU ASN ALA SEQRES 16 A 481 GLN ILE PRO ASN ASN ASN LEU ASN ASP TRP LEU ASN GLY SEQRES 17 A 481 ARG GLU GLY GLU PHE VAL LEU ILE ASN GLY GLN PHE LYS SEQRES 18 A 481 PRO LYS ILE LYS LEU ALA THR ASN GLU ARG ILE ARG ILE SEQRES 19 A 481 TYR ASN ALA THR ALA ALA ARG TYR LEU ASN LEU ARG ILE SEQRES 20 A 481 GLN GLY ALA LYS PHE ILE LEU VAL GLY THR ASP GLY GLY SEQRES 21 A 481 LEU ILE GLU LYS THR ILE TYR LYS GLU GLU LEU PHE LEU SEQRES 22 A 481 SER PRO ALA SER ARG VAL GLU VAL LEU ILE ASP ALA PRO SEQRES 23 A 481 LYS ASP GLY ASN PHE LYS LEU GLU SER ALA TYR TYR ASP SEQRES 24 A 481 ARG ASP LYS MET MET VAL LYS GLU GLU PRO ASN THR LEU SEQRES 25 A 481 PHE LEU ALA ASN ILE ASN LEU LYS LYS GLU ASN VAL GLU SEQRES 26 A 481 LEU PRO LYS ASN LEU LYS ILE PHE LYS PRO SER GLU GLU SEQRES 27 A 481 PRO LYS GLU PHE LYS GLU ILE ILE MET SER GLU ASP HIS SEQRES 28 A 481 MET GLN MET HIS GLY MET MET GLY LYS SER GLU GLY GLU SEQRES 29 A 481 LEU LYS ILE ALA LEU ALA SER MET PHE LEU ILE ASN ARG SEQRES 30 A 481 LYS SER TYR ASP LEU LYS ARG ILE ASP LEU SER SER LYS SEQRES 31 A 481 LEU GLY VAL VAL GLU ASP TRP ILE VAL ILE ASN LYS SER SEQRES 32 A 481 HIS MET ASP HIS PRO PHE HIS ILE HIS GLY THR GLN PHE SEQRES 33 A 481 GLU LEU ILE SER SER LYS LEU ASN GLY LYS VAL GLN LYS SEQRES 34 A 481 ALA GLU PHE ARG ALA LEU ARG ASP THR ILE ASN VAL ARG SEQRES 35 A 481 PRO ASN GLU GLU LEU ARG LEU ARG MET LYS GLN ASP PHE SEQRES 36 A 481 LYS GLY LEU ARG MET TYR HIS CYS HIS ILE LEU GLU HIS SEQRES 37 A 481 GLU ASP LEU GLY MET MET GLY ASN LEU GLU VAL LYS GLU HET CU A 601 1 HET CU A 602 1 HET CU A 603 1 HET CU A 604 1 HET OXY A 605 2 HET EDO A1514 4 HET EDO A1515 4 HET EDO A1516 4 HETNAM CU COPPER (II) ION HETNAM OXY OXYGEN MOLECULE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CU 4(CU 2+) FORMUL 6 OXY O2 FORMUL 7 EDO 3(C2 H6 O2) FORMUL 10 HOH *318(H2 O) HELIX 1 1 ASP A 57 PHE A 61 5 5 HELIX 2 2 PRO A 146 ASP A 150 5 5 HELIX 3 3 THR A 186 MET A 193 1 8 HELIX 4 4 ASN A 233 GLY A 240 1 8 HELIX 5 5 GLY A 388 LYS A 392 5 5 HELIX 6 6 SER A 393 SER A 403 1 11 HELIX 7 7 ILE A 497 LEU A 503 1 7 SHEET 1 AA 4 THR A 102 TYR A 107 0 SHEET 2 AA 4 ILE A 82 ILE A 94 -1 O LYS A 90 N THR A 106 SHEET 3 AA 4 LYS A 123 ASN A 130 1 O LYS A 123 N PHE A 83 SHEET 4 AA 4 GLU A 162 GLU A 168 -1 O ARG A 163 N VAL A 128 SHEET 1 AB 4 ILE A 116 PHE A 119 0 SHEET 2 AB 4 GLY A 197 LYS A 202 1 O ALA A 198 N ILE A 116 SHEET 3 AB 4 GLY A 175 HIS A 180 -1 O GLY A 175 N ILE A 201 SHEET 4 AB 4 HIS A 139 HIS A 141 -1 O HIS A 139 N HIS A 180 SHEET 1 AC 6 PHE A 245 ILE A 248 0 SHEET 2 AC 6 LYS A 212 LEU A 221 -1 O SER A 219 N LEU A 247 SHEET 3 AC 6 GLU A 262 ASN A 268 1 O ARG A 263 N LYS A 214 SHEET 4 AC 6 ARG A 310 ASP A 316 -1 O VAL A 311 N ILE A 266 SHEET 5 AC 6 LYS A 283 THR A 289 -1 O LYS A 283 N ASP A 316 SHEET 6 AC 6 GLY A 292 LYS A 300 -1 O GLY A 292 N THR A 289 SHEET 1 AD 5 LYS A 255 ALA A 259 0 SHEET 2 AD 5 LEU A 344 LYS A 352 1 O ASN A 348 N ILE A 256 SHEET 3 AD 5 GLY A 321 SER A 327 -1 O GLY A 321 N LEU A 351 SHEET 4 AD 5 LEU A 275 ILE A 279 -1 O ARG A 278 N GLU A 326 SHEET 5 AD 5 LEU A 303 LEU A 305 -1 O LEU A 303 N LEU A 277 SHEET 1 AE 6 PHE A 405 ILE A 407 0 SHEET 2 AE 6 GLU A 373 GLU A 381 -1 O SER A 380 N LEU A 406 SHEET 3 AE 6 GLU A 427 ASN A 433 1 O ASP A 428 N LYS A 375 SHEET 4 AE 6 GLU A 478 MET A 483 -1 O LEU A 479 N VAL A 431 SHEET 5 AE 6 PHE A 448 LEU A 455 -1 O GLU A 449 N ARG A 482 SHEET 6 AE 6 LYS A 458 LYS A 461 -1 O LYS A 458 N LEU A 455 SHEET 1 AF 6 PHE A 405 ILE A 407 0 SHEET 2 AF 6 GLU A 373 GLU A 381 -1 O SER A 380 N LEU A 406 SHEET 3 AF 6 GLU A 427 ASN A 433 1 O ASP A 428 N LYS A 375 SHEET 4 AF 6 GLU A 478 MET A 483 -1 O LEU A 479 N VAL A 431 SHEET 5 AF 6 PHE A 448 LEU A 455 -1 O GLU A 449 N ARG A 482 SHEET 6 AF 6 LEU A 467 ARG A 468 1 O ARG A 468 N PHE A 448 SHEET 1 AG 2 LYS A 458 LYS A 461 0 SHEET 2 AG 2 PHE A 448 LEU A 455 -1 O SER A 453 N GLN A 460 SHEET 1 AH 5 LEU A 419 LYS A 422 0 SHEET 2 AH 5 MET A 506 LYS A 512 1 O ASN A 508 N LEU A 419 SHEET 3 AH 5 GLY A 489 CYS A 495 -1 O GLY A 489 N VAL A 511 SHEET 4 AH 5 HIS A 439 ILE A 443 -1 O HIS A 442 N HIS A 494 SHEET 5 AH 5 THR A 470 VAL A 473 -1 O ILE A 471 N PHE A 441 LINK NE2 HIS A 139 CU CU A 604 1555 1555 1.94 LINK ND1 HIS A 141 CU CU A 602 1555 1555 1.98 LINK NE2 HIS A 180 CU CU A 602 1555 1555 1.99 LINK ND1 HIS A 439 CU CU A 601 1555 1555 2.03 LINK NE2 HIS A 442 CU CU A 604 1555 1555 1.93 LINK NE2 HIS A 444 CU CU A 603 1555 1555 1.96 LINK NE2 HIS A 494 CU CU A 603 1555 1555 2.00 LINK SG CYS A 495 CU CU A 601 1555 1555 2.29 LINK NE2 HIS A 496 CU CU A 602 1555 1555 2.17 LINK ND1 HIS A 500 CU CU A 601 1555 1555 2.00 CISPEP 1 VAL A 111 PRO A 112 0 6.13 SITE 1 AC1 4 HIS A 439 CYS A 495 HIS A 500 MET A 505 SITE 1 AC2 5 HIS A 141 HIS A 180 HIS A 496 CU A 604 SITE 2 AC2 5 OXY A 605 SITE 1 AC3 5 HIS A 182 HIS A 444 HIS A 494 CU A 604 SITE 2 AC3 5 OXY A 605 SITE 1 AC4 7 HIS A 139 HIS A 141 HIS A 442 HIS A 444 SITE 2 AC4 7 CU A 602 CU A 603 OXY A 605 SITE 1 AC5 11 HIS A 139 HIS A 141 HIS A 180 HIS A 182 SITE 2 AC5 11 HIS A 442 HIS A 444 HIS A 494 HIS A 496 SITE 3 AC5 11 CU A 602 CU A 603 CU A 604 SITE 1 AC6 4 VAL A 311 ARG A 468 EDO A1515 HOH A2205 SITE 1 AC7 7 PHE A 304 LEU A 305 SER A 306 SER A 309 SITE 2 AC7 7 ASN A 472 EDO A1514 HOH A2318 SITE 1 AC8 3 LEU A 53 ASN A 233 HOH A2003 CRYST1 48.810 94.860 50.380 90.00 100.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020488 0.000000 0.003845 0.00000 SCALE2 0.000000 0.010542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020196 0.00000