HEADER HYDROLASE 07-AUG-11 3ZX5 TITLE THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, TITLE 2 COVALENTLY BOUND TO VANADATE AND IN COMPLEX WITH ALPHA- TITLE 3 MANNOSYLGLYCERATE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPGP; COMPND 5 EC: 3.1.3.70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PKK223-3 KEYWDS HYDROLASE, HALOALKANOID ACID DEHALOGENASE-LIKE PHOSPHATASE, HAD-LIKE KEYWDS 2 PHOSPHATASE, CRYSTALLOGRAPHIC SNAPSHOT EXPDTA X-RAY DIFFRACTION AUTHOR S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS REVDAT 4 20-DEC-23 3ZX5 1 HETSYN REVDAT 3 29-JUL-20 3ZX5 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 09-NOV-11 3ZX5 1 JRNL REVDAT 1 19-OCT-11 3ZX5 0 JRNL AUTH S.GONCALVES,A.M.ESTEVES,H.SANTOS,N.BORGES,P.M.MATIAS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF JRNL TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB27: A NEW MEMBER OF THE HALOALKANOIC ACID JRNL TITL 4 DEHALOGENASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 50 9551 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21961705 JRNL DOI 10.1021/BI201171H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GONCALVES,A.M.ESTEVES,N.BORGES,H.SANTOS,P.M.MATIAS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB27. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 390 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21393850 REMARK 1 DOI 10.1107/S1744309111002843 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 46174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7753 - 3.8970 0.99 4489 233 0.1580 0.1938 REMARK 3 2 3.8970 - 3.0943 0.99 4401 241 0.1584 0.1961 REMARK 3 3 3.0943 - 2.7035 0.99 4416 223 0.1730 0.2008 REMARK 3 4 2.7035 - 2.4565 1.00 4373 253 0.1664 0.2327 REMARK 3 5 2.4565 - 2.2805 0.99 4376 220 0.1603 0.2124 REMARK 3 6 2.2805 - 2.1461 1.00 4391 219 0.1550 0.2308 REMARK 3 7 2.1461 - 2.0386 1.00 4386 249 0.1644 0.2080 REMARK 3 8 2.0386 - 1.9499 0.99 4355 233 0.1850 0.2598 REMARK 3 9 1.9499 - 1.8749 0.99 4373 237 0.2266 0.2619 REMARK 3 10 1.8749 - 1.8102 0.98 4274 232 0.2802 0.3335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 61.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.33810 REMARK 3 B22 (A**2) : 2.38780 REMARK 3 B33 (A**2) : -6.72590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42780 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4043 REMARK 3 ANGLE : 1.072 5503 REMARK 3 CHIRALITY : 0.070 605 REMARK 3 PLANARITY : 0.005 727 REMARK 3 DIHEDRAL : 12.544 1543 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:38) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0858 51.5384 -15.8297 REMARK 3 T TENSOR REMARK 3 T11: 0.5890 T22: 0.2579 REMARK 3 T33: 0.3551 T12: 0.1026 REMARK 3 T13: -0.0078 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.5254 L22: 0.2993 REMARK 3 L33: 1.0058 L12: 0.1548 REMARK 3 L13: 0.1556 L23: 0.1148 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.1134 S13: -0.6941 REMARK 3 S21: -0.0164 S22: 0.0079 S23: -0.1639 REMARK 3 S31: 1.5763 S32: 0.3920 S33: 0.0052 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 39:146) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4276 62.0409 2.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.2257 REMARK 3 T33: 0.1986 T12: -0.0213 REMARK 3 T13: -0.0000 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 1.4337 L22: 1.9578 REMARK 3 L33: 3.1921 L12: 0.1796 REMARK 3 L13: -0.1651 L23: -0.6467 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.2459 S13: 0.0066 REMARK 3 S21: 0.0859 S22: -0.1113 S23: -0.0582 REMARK 3 S31: 0.2158 S32: 0.1577 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 147:191) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1683 66.5679 -4.8028 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.2847 REMARK 3 T33: 0.2370 T12: -0.0193 REMARK 3 T13: -0.0033 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 1.1138 L22: 1.0305 REMARK 3 L33: 1.4923 L12: -0.2922 REMARK 3 L13: 1.1812 L23: 0.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0246 S13: 0.1116 REMARK 3 S21: -0.0002 S22: 0.0784 S23: 0.1717 REMARK 3 S31: 0.0061 S32: -0.5680 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 192:250) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4398 56.1951 -20.6103 REMARK 3 T TENSOR REMARK 3 T11: 0.4125 T22: 0.3079 REMARK 3 T33: 0.3379 T12: -0.0637 REMARK 3 T13: -0.0953 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 0.8499 L22: 1.1715 REMARK 3 L33: 1.2919 L12: -0.3029 REMARK 3 L13: 0.7830 L23: 0.4987 REMARK 3 S TENSOR REMARK 3 S11: 0.1465 S12: 0.1962 S13: -0.2926 REMARK 3 S21: -0.3340 S22: 0.1005 S23: 0.3322 REMARK 3 S31: 0.7276 S32: -0.2694 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:36) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3278 58.1456 46.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.4635 T22: 0.2124 REMARK 3 T33: 0.2794 T12: -0.0640 REMARK 3 T13: -0.0515 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 0.8691 L22: 0.5152 REMARK 3 L33: 0.4332 L12: -0.2540 REMARK 3 L13: -0.0748 L23: 0.3860 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: -0.1668 S13: 0.3679 REMARK 3 S21: 0.5467 S22: -0.0852 S23: -0.1835 REMARK 3 S31: -0.7243 S32: 0.3060 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 37:80) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1911 46.0608 41.4450 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.2400 REMARK 3 T33: 0.2545 T12: -0.0288 REMARK 3 T13: -0.0665 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 0.3713 L22: 0.6858 REMARK 3 L33: 0.5055 L12: 0.3930 REMARK 3 L13: -0.2255 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: -0.0247 S13: -0.0765 REMARK 3 S21: 0.4659 S22: -0.1182 S23: -0.3905 REMARK 3 S31: 0.0036 S32: 0.4685 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 81:209) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8133 46.9289 28.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1510 REMARK 3 T33: 0.1941 T12: -0.0228 REMARK 3 T13: -0.0151 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.3208 L22: 1.4985 REMARK 3 L33: 2.7581 L12: 0.3425 REMARK 3 L13: -0.1463 L23: 0.2626 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.1413 S13: 0.0193 REMARK 3 S21: 0.0447 S22: -0.0066 S23: -0.0011 REMARK 3 S31: 0.0293 S32: 0.0803 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 210:250) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0930 56.0327 44.5674 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.2575 REMARK 3 T33: 0.3355 T12: -0.0386 REMARK 3 T13: 0.0427 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 0.8987 L22: 0.6344 REMARK 3 L33: 0.3234 L12: 0.0858 REMARK 3 L13: 0.0708 L23: -0.3654 REMARK 3 S TENSOR REMARK 3 S11: -0.1490 S12: -0.0164 S13: 0.3362 REMARK 3 S21: 0.1785 S22: 0.0119 S23: 0.7720 REMARK 3 S31: -0.1462 S32: -0.7231 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46178 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZTY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE REFERENCE 1 IN REMARK 1., PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.63150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 253 REMARK 465 ARG A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 PRO A 259 REMARK 465 ARG B 253 REMARK 465 ARG B 254 REMARK 465 GLY B 255 REMARK 465 GLY B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 PRO B 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 252 CA C O CB OG REMARK 470 SER B 252 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -77.98 -100.38 REMARK 500 THR A 10 -74.90 -124.09 REMARK 500 TYR A 137 -48.45 -135.61 REMARK 500 ASP A 202 -4.22 -143.01 REMARK 500 LEU A 247 -61.45 -100.61 REMARK 500 PRO A 249 11.76 -67.58 REMARK 500 LEU B 7 -74.88 -103.22 REMARK 500 THR B 10 -73.09 -121.27 REMARK 500 TYR B 137 -45.53 -135.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2015 DISTANCE = 6.70 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 METAVANADATE (VN4): METAVANADATE IS COVALENTLY LINKED TO REMARK 600 ASP6 OD OXYGEN REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD2 REMARK 620 2 ASP A 8 O 87.1 REMARK 620 3 ASP A 202 OD1 79.6 86.9 REMARK 620 4 VN4 A 261 O3 100.1 92.1 178.9 REMARK 620 5 HOH A2005 O 87.9 174.2 95.2 85.8 REMARK 620 6 HOH A2006 O 170.6 88.7 91.8 88.4 96.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VN4 A 261 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD1 REMARK 620 2 VN4 A 261 O1 95.7 REMARK 620 3 VN4 A 261 O2 98.2 123.0 REMARK 620 4 VN4 A 261 O3 98.6 114.6 117.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 260 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD2 REMARK 620 2 ASP B 8 O 85.8 REMARK 620 3 ASP B 202 OD1 83.5 93.1 REMARK 620 4 VN4 B 261 O2 96.2 95.1 171.8 REMARK 620 5 HOH B2006 O 87.2 172.9 87.1 84.7 REMARK 620 6 HOH B2010 O 175.4 89.7 96.6 84.4 97.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VN4 B 261 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD1 REMARK 620 2 VN4 B 261 O1 94.7 REMARK 620 3 VN4 B 261 O2 102.8 121.6 REMARK 620 4 VN4 B 261 O3 96.1 116.9 115.9 REMARK 620 5 2M8 B 262 O13 175.0 86.5 72.5 87.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZWK RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE METAVANADATE REMARK 900 RELATED ID: 3ZUP RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZTY RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF THE GADOLINIUM DERIVATIVE OF MPGP, REMARK 900 THE MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS REMARK 900 THERMOPHILUS HB27 REMARK 900 RELATED ID: 3ZTW RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF APO-MPGP, THE MANNOSYL -3- REMARK 900 PHOSPHOGLYCERATE PHOSPHATASE FROM THERMUS THERMOPHILUS HB27 IN ITS REMARK 900 APO-FORM REMARK 900 RELATED ID: 3ZU6 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND ORTHOPHOSPHATE REMARK 900 REACTION PRODUCTS. REMARK 900 RELATED ID: 3ZW7 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE AND METAPHOSPHATE. REMARK 900 RELATED ID: 3ZWD RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE. REMARK 900 RELATED ID: 3ZX4 RELATED DB: PDB REMARK 900 THE 3-DIMENSIONAL STRUCTURE OF MPGP FROM THERMUS THERMOPHILUS HB27, REMARK 900 IN COMPLEX WITH THE ALPHA- MANNOSYLGLYCERATE,ORTHOPHOSPHATE AND REMARK 900 MAGNESIUM DBREF 3ZX5 A 1 259 UNP Q72K29 Q72K29_THET2 1 259 DBREF 3ZX5 B 1 259 UNP Q72K29 Q72K29_THET2 1 259 SEQRES 1 A 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 A 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 A 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 A 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 A 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 A 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 A 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 A 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 A 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 A 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 A 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 A 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 A 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 A 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 A 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 A 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 A 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 A 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 A 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 A 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO SEQRES 1 B 259 MET ILE VAL PHE THR ASP LEU ASP GLY THR LEU LEU ASP SEQRES 2 B 259 GLU ARG GLY GLU LEU GLY PRO ALA ARG GLU ALA LEU GLU SEQRES 3 B 259 ARG LEU ARG ALA LEU GLY VAL PRO VAL VAL PRO VAL THR SEQRES 4 B 259 ALA LYS THR ARG LYS GLU VAL GLU ALA LEU GLY LEU GLU SEQRES 5 B 259 PRO PRO PHE ILE VAL GLU ASN GLY GLY GLY LEU TYR LEU SEQRES 6 B 259 PRO ARG ASP TRP PRO VAL ARG ALA GLY ARG PRO LYS GLY SEQRES 7 B 259 GLY TYR ARG VAL VAL SER LEU ALA TRP PRO TYR ARG LYS SEQRES 8 B 259 VAL ARG ALA ARG LEU ARG GLU ALA GLU ALA LEU ALA GLY SEQRES 9 B 259 ARG PRO ILE LEU GLY TYR GLY ASP LEU THR ALA GLU ALA SEQRES 10 B 259 VAL ALA ARG LEU THR GLY LEU SER ARG GLU ALA ALA ARG SEQRES 11 B 259 ARG ALA LYS ALA ARG GLU TYR ASP GLU THR LEU VAL LEU SEQRES 12 B 259 CYS PRO GLU GLU VAL GLU ALA VAL LEU GLU ALA LEU GLU SEQRES 13 B 259 ALA VAL GLY LEU GLU TRP THR HIS GLY GLY ARG PHE TYR SEQRES 14 B 259 HIS ALA ALA LYS GLY ALA ASP LYS GLY ARG ALA VAL ALA SEQRES 15 B 259 ARG LEU ARG ALA LEU TRP PRO ASP PRO GLU GLU ALA ARG SEQRES 16 B 259 PHE ALA VAL GLY LEU GLY ASP SER LEU ASN ASP LEU PRO SEQRES 17 B 259 LEU PHE ARG ALA VAL ASP LEU ALA VAL TYR VAL GLY ARG SEQRES 18 B 259 GLY ASP PRO PRO GLU GLY VAL LEU ALA THR PRO ALA PRO SEQRES 19 B 259 GLY PRO GLU GLY PHE ARG TYR ALA VAL GLU ARG TYR LEU SEQRES 20 B 259 LEU PRO ARG LEU SER ARG ARG GLY GLY SER GLY PRO HET MG A 260 1 HET VN4 A 261 4 HET 2M8 A 262 18 HET MG B 260 1 HET VN4 B 261 4 HET 2M8 B 262 18 HETNAM MG MAGNESIUM ION HETNAM VN4 OXIDO(DIOXO)VANADIUM HETNAM 2M8 (2R)-3-HYDROXY-2-(ALPHA-D-MANNOPYRANOSYLOXY)PROPANOIC HETNAM 2 2M8 ACID HETSYN 2M8 2-O-ALPHA-MANNOSYL-D-GLYCERATE; (2R)-3-HYDROXY-2- HETSYN 2 2M8 (ALPHA-D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 3 2M8 (D-MANNOSYLOXY)PROPANOIC ACID; (2R)-3-HYDROXY-2- HETSYN 4 2M8 (MANNOSYLOXY)PROPANOIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 VN4 2(O3 V 1-) FORMUL 5 2M8 2(C9 H16 O9) FORMUL 9 HOH *391(H2 O) HELIX 1 1 PRO A 20 LEU A 31 1 12 HELIX 2 2 THR A 42 LEU A 49 1 8 HELIX 3 3 GLU A 58 GLY A 60 5 3 HELIX 4 4 PRO A 88 GLY A 104 1 17 HELIX 5 5 THR A 114 GLY A 123 1 10 HELIX 6 6 SER A 125 ALA A 134 1 10 HELIX 7 7 CYS A 144 GLU A 146 5 3 HELIX 8 8 GLU A 147 VAL A 158 1 12 HELIX 9 9 ASP A 176 LEU A 187 1 12 HELIX 10 10 SER A 203 ASN A 205 5 3 HELIX 11 11 ASP A 206 ALA A 212 1 7 HELIX 12 12 PRO A 234 LEU A 247 1 14 HELIX 13 13 LEU A 248 LEU A 251 5 4 HELIX 14 14 LEU B 7 LEU B 12 1 6 HELIX 15 15 LEU B 18 PRO B 20 5 3 HELIX 16 16 ALA B 21 LEU B 31 1 11 HELIX 17 17 THR B 42 LEU B 49 1 8 HELIX 18 18 GLU B 58 GLY B 60 5 3 HELIX 19 19 PRO B 88 GLY B 104 1 17 HELIX 20 20 THR B 114 GLY B 123 1 10 HELIX 21 21 SER B 125 LYS B 133 1 9 HELIX 22 22 CYS B 144 GLU B 146 5 3 HELIX 23 23 GLU B 147 VAL B 158 1 12 HELIX 24 24 ASP B 176 LEU B 187 1 12 HELIX 25 25 ASP B 190 ARG B 195 1 6 HELIX 26 26 SER B 203 ASN B 205 5 3 HELIX 27 27 ASP B 206 ALA B 212 1 7 HELIX 28 28 PRO B 234 LEU B 247 1 14 SHEET 1 AA 5 VAL A 35 PRO A 37 0 SHEET 2 AA 5 ILE A 2 THR A 5 1 O VAL A 3 N VAL A 36 SHEET 3 AA 5 ALA A 197 GLY A 201 1 O VAL A 198 N PHE A 4 SHEET 4 AA 5 LEU A 215 TYR A 218 1 O LEU A 215 N GLY A 199 SHEET 5 AA 5 LEU A 229 ALA A 230 1 O LEU A 229 N TYR A 218 SHEET 1 AB 4 PHE A 55 VAL A 57 0 SHEET 2 AB 4 GLY A 62 PRO A 66 -1 O GLY A 62 N VAL A 57 SHEET 3 AB 4 TYR A 80 SER A 84 -1 O ARG A 81 N LEU A 65 SHEET 4 AB 4 ARG A 75 LYS A 77 -1 O ARG A 75 N VAL A 82 SHEET 1 AC 4 LEU A 108 GLY A 109 0 SHEET 2 AC 4 GLU A 139 VAL A 142 -1 O VAL A 142 N LEU A 108 SHEET 3 AC 4 TYR A 169 ALA A 172 -1 O TYR A 169 N LEU A 141 SHEET 4 AC 4 GLU A 161 HIS A 164 -1 O GLU A 161 N ALA A 172 SHEET 1 BA 4 VAL B 35 PRO B 37 0 SHEET 2 BA 4 ILE B 2 THR B 5 1 O VAL B 3 N VAL B 36 SHEET 3 BA 4 ALA B 197 GLY B 201 1 O VAL B 198 N PHE B 4 SHEET 4 BA 4 LEU B 215 TYR B 218 1 O LEU B 215 N GLY B 199 SHEET 1 BB 4 PHE B 55 VAL B 57 0 SHEET 2 BB 4 GLY B 62 PRO B 66 -1 O GLY B 62 N VAL B 57 SHEET 3 BB 4 TYR B 80 SER B 84 -1 O ARG B 81 N LEU B 65 SHEET 4 BB 4 ARG B 75 LYS B 77 -1 O ARG B 75 N VAL B 82 SHEET 1 BC 4 LEU B 108 GLY B 109 0 SHEET 2 BC 4 GLU B 139 VAL B 142 -1 O VAL B 142 N LEU B 108 SHEET 3 BC 4 TYR B 169 ALA B 172 -1 O TYR B 169 N LEU B 141 SHEET 4 BC 4 GLU B 161 HIS B 164 -1 O GLU B 161 N ALA B 172 SSBOND 1 CYS A 144 CYS B 144 1555 1555 2.03 LINK OD2 ASP A 6 MG MG A 260 1555 1555 2.10 LINK OD1 ASP A 6 V VN4 A 261 1555 1555 2.05 LINK O ASP A 8 MG MG A 260 1555 1555 2.20 LINK OD1 ASP A 202 MG MG A 260 1555 1555 2.17 LINK MG MG A 260 O3 VN4 A 261 1555 1555 2.15 LINK MG MG A 260 O HOH A2005 1555 1555 2.26 LINK MG MG A 260 O HOH A2006 1555 1555 2.21 LINK OD2 ASP B 6 MG MG B 260 1555 1555 2.11 LINK OD1 ASP B 6 V VN4 B 261 1555 1555 2.02 LINK O ASP B 8 MG MG B 260 1555 1555 2.17 LINK OD1 ASP B 202 MG MG B 260 1555 1555 2.13 LINK MG MG B 260 O2 VN4 B 261 1555 1555 2.05 LINK MG MG B 260 O HOH B2006 1555 1555 2.21 LINK MG MG B 260 O HOH B2010 1555 1555 2.21 LINK V VN4 B 261 O13 2M8 B 262 1555 1555 2.73 CISPEP 1 PRO A 53 PRO A 54 0 4.89 CISPEP 2 PRO B 53 PRO B 54 0 4.13 CRYST1 39.948 71.263 91.217 90.00 95.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025033 0.000000 0.002419 0.00000 SCALE2 0.000000 0.014033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011014 0.00000 MTRIX1 1 0.815980 -0.017910 0.577800 -2.87725 1 MTRIX2 1 -0.033910 -0.999280 0.016910 110.92876 1 MTRIX3 1 0.577080 -0.033390 -0.816010 13.67410 1