HEADER SIGNALING 09-AUG-11 3ZXB TITLE WILD TYPE SINGLE INSULIN-LIKE GROWTH FACTOR BINDING DOMAIN PROTEIN TITLE 2 (SIBD-1) FROM CUPIENNIUS SALEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE INSULIN-LIKE GROWTH FACTOR-BINDING DOMAIN PROTEIN-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: INSULIN-LIKE GROWTH FACTOR BINDING DOMAIN, RESIDUES 20-97; COMPND 5 SYNONYM: SIBD-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPIENNIUS SALEI; SOURCE 3 ORGANISM_TAXID: 6928; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PCOLD-II KEYWDS SIGNALING, IGFBP, INSULIN BINDING DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR C.WIDMER,U.BAUMANN REVDAT 3 20-DEC-23 3ZXB 1 REMARK REVDAT 2 08-AUG-12 3ZXB 1 JRNL REVDAT 1 06-JUN-12 3ZXB 0 JRNL AUTH C.TRACHSEL,C.WIDMER,U.KAMPFER,C.BUHR,T.BAUMANN, JRNL AUTH 2 L.KUHN-NENTWIG,S.SCHURCH,J.SCHALLER,U.BAUMANN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF NATIVE AND JRNL TITL 2 RECOMBINANT SINGLE INSULIN-LIKE GROWTH FACTOR-BINDING DOMAIN JRNL TITL 3 PROTEIN (SIBD-1) FROM THE CENTRAL AMERICAN HUNTING SPIDER JRNL TITL 4 CUPIENNIUS SALEI (CTENIDAE). JRNL REF PROTEINS V. 80 2323 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22622866 JRNL DOI 10.1002/PROT.24119 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.3767 - 4.0482 0.94 3232 171 0.1930 0.2252 REMARK 3 2 4.0482 - 3.2133 0.95 3079 162 0.2337 0.2469 REMARK 3 3 3.2133 - 2.8072 0.95 3027 159 0.2774 0.3119 REMARK 3 4 2.8072 - 2.5505 0.95 3033 160 0.3053 0.3063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 85.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.31960 REMARK 3 B22 (A**2) : 15.31960 REMARK 3 B33 (A**2) : -30.63930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4950 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1971 REMARK 3 ANGLE : 1.425 2648 REMARK 3 CHIRALITY : 0.079 274 REMARK 3 PLANARITY : 0.011 363 REMARK 3 DIHEDRAL : 20.986 1206 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5237 31.6321 27.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.9301 T22: 0.6441 REMARK 3 T33: 0.5526 T12: 0.2783 REMARK 3 T13: 0.0739 T23: 0.1333 REMARK 3 L TENSOR REMARK 3 L11: 0.5251 L22: -0.0475 REMARK 3 L33: 3.0698 L12: 0.3190 REMARK 3 L13: 1.2116 L23: 0.3517 REMARK 3 S TENSOR REMARK 3 S11: -0.6763 S12: -0.7330 S13: 0.0301 REMARK 3 S21: 0.5087 S22: 0.2572 S23: -0.2491 REMARK 3 S31: -1.8177 S32: -0.5467 S33: 0.3031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 19:38) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2382 31.5899 37.1754 REMARK 3 T TENSOR REMARK 3 T11: 0.5290 T22: 0.6741 REMARK 3 T33: 0.4215 T12: -0.0264 REMARK 3 T13: -0.0111 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 5.5082 L22: 2.3885 REMARK 3 L33: 2.0180 L12: 0.4543 REMARK 3 L13: -3.2587 L23: 0.1497 REMARK 3 S TENSOR REMARK 3 S11: 0.6660 S12: 0.8814 S13: -0.3003 REMARK 3 S21: 0.0037 S22: -0.4093 S23: -0.1011 REMARK 3 S31: -0.5137 S32: -0.7384 S33: -0.0526 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 39:48) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4867 28.1702 40.9723 REMARK 3 T TENSOR REMARK 3 T11: 0.3963 T22: 0.5026 REMARK 3 T33: 0.3726 T12: -0.0730 REMARK 3 T13: -0.0573 T23: -0.1839 REMARK 3 L TENSOR REMARK 3 L11: 3.0258 L22: 6.8453 REMARK 3 L33: 1.0066 L12: 2.2462 REMARK 3 L13: 0.1684 L23: -1.6524 REMARK 3 S TENSOR REMARK 3 S11: 0.5275 S12: -1.3914 S13: 0.5104 REMARK 3 S21: -1.1281 S22: -0.1840 S23: 0.6966 REMARK 3 S31: 0.5243 S32: 1.0739 S33: -0.1782 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 49:78) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9943 31.8455 49.9004 REMARK 3 T TENSOR REMARK 3 T11: 0.4574 T22: 0.4689 REMARK 3 T33: 0.4337 T12: 0.0126 REMARK 3 T13: -0.0813 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 7.0303 L22: 3.3951 REMARK 3 L33: 2.5137 L12: -0.7687 REMARK 3 L13: -0.4718 L23: -1.1044 REMARK 3 S TENSOR REMARK 3 S11: -0.5101 S12: -0.5604 S13: 0.5498 REMARK 3 S21: -0.3526 S22: 0.9624 S23: -0.1440 REMARK 3 S31: 0.4452 S32: 0.0084 S33: -0.1858 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:13) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3756 19.4939 45.3468 REMARK 3 T TENSOR REMARK 3 T11: 0.6685 T22: 0.6420 REMARK 3 T33: 0.4975 T12: 0.2424 REMARK 3 T13: -0.0372 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.2638 L22: 7.5967 REMARK 3 L33: 3.6555 L12: 1.6770 REMARK 3 L13: -0.3832 L23: 3.5757 REMARK 3 S TENSOR REMARK 3 S11: 0.2222 S12: 0.4418 S13: 1.2856 REMARK 3 S21: 0.8584 S22: -0.0379 S23: 0.7175 REMARK 3 S31: 1.9537 S32: 1.3515 S33: -0.0278 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 14:26) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2965 16.4864 32.4742 REMARK 3 T TENSOR REMARK 3 T11: 1.1982 T22: 0.2847 REMARK 3 T33: 0.4017 T12: -0.0021 REMARK 3 T13: 0.2227 T23: -0.1015 REMARK 3 L TENSOR REMARK 3 L11: 3.2512 L22: 6.2770 REMARK 3 L33: 6.5541 L12: 0.6737 REMARK 3 L13: 2.5692 L23: -1.0655 REMARK 3 S TENSOR REMARK 3 S11: -1.2221 S12: 0.3184 S13: -0.6735 REMARK 3 S21: -0.0417 S22: 0.5192 S23: -1.1707 REMARK 3 S31: -0.7253 S32: -0.6027 S33: 0.8106 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 27:39) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7178 20.0113 29.8487 REMARK 3 T TENSOR REMARK 3 T11: 0.7458 T22: 0.6083 REMARK 3 T33: 0.3512 T12: -0.1372 REMARK 3 T13: 0.1194 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 4.4843 L22: 1.2783 REMARK 3 L33: 5.9238 L12: 0.2728 REMARK 3 L13: -2.0771 L23: 0.7136 REMARK 3 S TENSOR REMARK 3 S11: 0.8656 S12: 1.2098 S13: 0.1207 REMARK 3 S21: -0.2693 S22: -0.4774 S23: 0.0173 REMARK 3 S31: -0.8360 S32: 0.4686 S33: -0.6930 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 40:78) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0795 22.8687 22.7632 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.6482 REMARK 3 T33: 0.4175 T12: 0.1033 REMARK 3 T13: 0.1401 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.8456 L22: 0.5047 REMARK 3 L33: 1.0009 L12: -0.6310 REMARK 3 L13: 0.3778 L23: 0.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: 0.0432 S13: 0.3616 REMARK 3 S21: -0.1504 S22: -0.2069 S23: -0.4126 REMARK 3 S31: -0.5124 S32: -0.3061 S33: 0.1349 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2058 53.0647 38.5494 REMARK 3 T TENSOR REMARK 3 T11: 0.9342 T22: 1.1440 REMARK 3 T33: 0.5019 T12: 0.3589 REMARK 3 T13: 0.1084 T23: 0.1415 REMARK 3 L TENSOR REMARK 3 L11: 5.4728 L22: 3.0944 REMARK 3 L33: 9.7303 L12: 2.1956 REMARK 3 L13: 1.4150 L23: 0.3678 REMARK 3 S TENSOR REMARK 3 S11: -1.0444 S12: -0.4913 S13: -0.1715 REMARK 3 S21: 0.0507 S22: 0.2686 S23: 1.1189 REMARK 3 S31: -2.8035 S32: -2.6921 S33: 0.4592 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 13:39) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4109 45.2076 52.4811 REMARK 3 T TENSOR REMARK 3 T11: 0.5448 T22: 0.6530 REMARK 3 T33: 0.2988 T12: -0.2981 REMARK 3 T13: -0.0474 T23: 0.0876 REMARK 3 L TENSOR REMARK 3 L11: 0.9185 L22: 2.5242 REMARK 3 L33: 0.3014 L12: 0.0694 REMARK 3 L13: -0.5121 L23: -0.4385 REMARK 3 S TENSOR REMARK 3 S11: -0.5848 S12: 0.6412 S13: -0.0920 REMARK 3 S21: 0.0465 S22: 0.3052 S23: 0.1527 REMARK 3 S31: 0.1361 S32: -0.4226 S33: 0.1034 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 40:55) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3563 51.4216 58.0464 REMARK 3 T TENSOR REMARK 3 T11: 0.8787 T22: 0.3809 REMARK 3 T33: 0.4330 T12: -0.0736 REMARK 3 T13: -0.0388 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.7782 L22: 1.7046 REMARK 3 L33: 2.5792 L12: 1.2164 REMARK 3 L13: -1.9960 L23: -2.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.5735 S12: -0.4836 S13: 0.8223 REMARK 3 S21: -1.1613 S22: 0.4202 S23: 0.0599 REMARK 3 S31: 0.2336 S32: 0.1179 S33: -0.3074 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 56:78) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3426 51.2981 67.1914 REMARK 3 T TENSOR REMARK 3 T11: 0.4700 T22: 0.3353 REMARK 3 T33: 0.0425 T12: -0.0367 REMARK 3 T13: 0.1636 T23: -0.1247 REMARK 3 L TENSOR REMARK 3 L11: 4.9550 L22: 4.9211 REMARK 3 L33: 8.5840 L12: 2.0417 REMARK 3 L13: 5.5352 L23: 2.4783 REMARK 3 S TENSOR REMARK 3 S11: 0.1833 S12: 1.2495 S13: 0.7943 REMARK 3 S21: 0.5402 S22: 0.1874 S23: 0.3985 REMARK 3 S31: 1.4217 S32: 1.7131 S33: -0.0205 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN D AND RESID 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1019 49.8759 59.8726 REMARK 3 T TENSOR REMARK 3 T11: 0.8304 T22: 0.9799 REMARK 3 T33: 0.6815 T12: -0.1448 REMARK 3 T13: -0.0543 T23: -0.1342 REMARK 3 L TENSOR REMARK 3 L11: 1.4928 L22: 1.1485 REMARK 3 L33: 4.8091 L12: -0.3684 REMARK 3 L13: -1.9693 L23: 1.8452 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.6239 S13: 0.2203 REMARK 3 S21: 0.5964 S22: -0.3408 S23: -0.0417 REMARK 3 S31: 0.9565 S32: 0.6585 S33: 0.0190 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN D AND RESID 11:21) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3508 37.1147 47.0102 REMARK 3 T TENSOR REMARK 3 T11: 0.6602 T22: 0.9459 REMARK 3 T33: 0.8984 T12: -0.3111 REMARK 3 T13: 0.1746 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 4.5005 L22: 0.2371 REMARK 3 L33: 2.0466 L12: 0.3482 REMARK 3 L13: -2.9818 L23: -0.3488 REMARK 3 S TENSOR REMARK 3 S11: -0.3515 S12: 2.2587 S13: -0.4600 REMARK 3 S21: -0.2903 S22: 0.5887 S23: -0.6672 REMARK 3 S31: -0.2688 S32: -1.7145 S33: -0.0487 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN D AND RESID 22:32) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7717 45.9468 50.1777 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 0.4953 REMARK 3 T33: 0.5733 T12: 0.1646 REMARK 3 T13: -0.0853 T23: -0.2073 REMARK 3 L TENSOR REMARK 3 L11: 7.8264 L22: 8.2813 REMARK 3 L33: 5.8527 L12: -0.8135 REMARK 3 L13: 0.5813 L23: 2.3970 REMARK 3 S TENSOR REMARK 3 S11: -1.0338 S12: -0.7649 S13: 1.4939 REMARK 3 S21: -0.4367 S22: 0.4400 S23: 1.2093 REMARK 3 S31: 0.2610 S32: 0.9951 S33: 0.1644 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN D AND RESID 33:78) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1504 50.2649 37.1699 REMARK 3 T TENSOR REMARK 3 T11: 0.8439 T22: 0.4257 REMARK 3 T33: 0.2560 T12: -0.1463 REMARK 3 T13: 0.0222 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.9282 L22: 2.1008 REMARK 3 L33: 1.7923 L12: -0.9129 REMARK 3 L13: -0.2489 L23: 1.6405 REMARK 3 S TENSOR REMARK 3 S11: -0.2498 S12: -0.4316 S13: 0.3370 REMARK 3 S21: -0.1419 S22: 0.7918 S23: -0.0991 REMARK 3 S31: 0.2405 S32: 0.2481 S33: -0.3794 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 59-69 IN CHAIN A, 60-69 IN REMARK 3 CHAIN B, 61-69 IN CHAIN C, 59-69 IN CHAIN D ARE DISORDERED. REMARK 4 REMARK 4 3ZXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13082 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.960 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZXC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE, 0.1 M TRIS, 2 % REMARK 280 GLYCEROL, PH 8. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.86467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.43233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.43233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.86467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 59 REMARK 465 VAL A 60 REMARK 465 GLY A 61 REMARK 465 GLU A 62 REMARK 465 ARG A 63 REMARK 465 ASP A 64 REMARK 465 SER A 65 REMARK 465 GLN A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 GLU A 69 REMARK 465 ILE A 70 REMARK 465 VAL B 60 REMARK 465 GLY B 61 REMARK 465 GLU B 62 REMARK 465 ARG B 63 REMARK 465 ASP B 64 REMARK 465 SER B 65 REMARK 465 GLN B 66 REMARK 465 ASP B 67 REMARK 465 PRO B 68 REMARK 465 GLU B 69 REMARK 465 ILE B 70 REMARK 465 GLY C 61 REMARK 465 GLU C 62 REMARK 465 ARG C 63 REMARK 465 ASP C 64 REMARK 465 SER C 65 REMARK 465 GLN C 66 REMARK 465 ASP C 67 REMARK 465 PRO C 68 REMARK 465 GLU C 69 REMARK 465 ILE C 70 REMARK 465 LEU D 59 REMARK 465 VAL D 60 REMARK 465 GLY D 61 REMARK 465 GLU D 62 REMARK 465 ARG D 63 REMARK 465 ASP D 64 REMARK 465 SER D 65 REMARK 465 GLN D 66 REMARK 465 ASP D 67 REMARK 465 PRO D 68 REMARK 465 GLU D 69 REMARK 465 ILE D 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 40 O GLY D 72 0.88 REMARK 500 NH1 ARG A 7 O HOH A 2001 1.81 REMARK 500 O VAL B 46 O HOH B 2007 1.83 REMARK 500 O HOH A 2003 O HOH A 2005 1.85 REMARK 500 NE2 GLN D 34 O HOH D 2010 1.88 REMARK 500 O HOH D 2007 O HOH D 2014 1.91 REMARK 500 CD GLN D 34 O HOH D 2010 1.91 REMARK 500 SG CYS C 28 O HOH C 2002 1.92 REMARK 500 SG CYS D 40 C GLY D 72 1.93 REMARK 500 O ASP D 24 N ASP D 27 1.93 REMARK 500 O LEU B 59 O HOH B 2009 1.96 REMARK 500 CG LEU B 59 O HOH B 2009 1.99 REMARK 500 O HOH B 2004 O HOH B 2005 2.03 REMARK 500 OE1 GLU C 44 O HOH C 2005 2.09 REMARK 500 O PHE D 33 O HOH D 2009 2.09 REMARK 500 O HOH D 2002 O HOH D 2005 2.10 REMARK 500 N ASP D 52 O HOH D 2015 2.12 REMARK 500 CA CYS C 28 O HOH C 2002 2.13 REMARK 500 O VAL D 46 O HOH D 2012 2.16 REMARK 500 CB CYS C 6 OH TYR D 39 2.19 REMARK 500 O HOH D 2007 O HOH D 2016 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2008 O HOH C 2006 2664 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 4 C - N - CD ANGL. DEV. = -19.7 DEGREES REMARK 500 CYS C 11 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 27 7.03 86.89 REMARK 500 CYS D 26 0.23 -68.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A2003 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2004 DISTANCE = 5.87 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZXC RELATED DB: PDB REMARK 900 E69 DELETION MUTANT SINGLE INSULIN-LIKE GROWTH FACTOR BINDING REMARK 900 DOMAIN PROTEIN (SIBD-1) FROM CUPIENNIUS SALEI DBREF 3ZXB A 1 78 UNP G4V4F9 G4V4F9_CUPSA 20 97 DBREF 3ZXB B 1 78 UNP G4V4F9 G4V4F9_CUPSA 20 97 DBREF 3ZXB C 1 78 UNP G4V4F9 G4V4F9_CUPSA 20 97 DBREF 3ZXB D 1 78 UNP G4V4F9 G4V4F9_CUPSA 20 97 SEQRES 1 A 78 PHE THR CYS PRO GLU CYS ARG PRO GLU LEU CYS GLY ASP SEQRES 2 A 78 PRO GLY TYR CYS GLU TYR GLY THR THR LYS ASP ALA CYS SEQRES 3 A 78 ASP CYS CYS PRO VAL CYS PHE GLN GLY PRO GLY GLY TYR SEQRES 4 A 78 CYS GLY GLY PRO GLU ASP VAL PHE GLY ILE CYS ALA ASP SEQRES 5 A 78 GLY PHE ALA CYS VAL PRO LEU VAL GLY GLU ARG ASP SER SEQRES 6 A 78 GLN ASP PRO GLU ILE VAL GLY THR CYS VAL LYS ILE PRO SEQRES 1 B 78 PHE THR CYS PRO GLU CYS ARG PRO GLU LEU CYS GLY ASP SEQRES 2 B 78 PRO GLY TYR CYS GLU TYR GLY THR THR LYS ASP ALA CYS SEQRES 3 B 78 ASP CYS CYS PRO VAL CYS PHE GLN GLY PRO GLY GLY TYR SEQRES 4 B 78 CYS GLY GLY PRO GLU ASP VAL PHE GLY ILE CYS ALA ASP SEQRES 5 B 78 GLY PHE ALA CYS VAL PRO LEU VAL GLY GLU ARG ASP SER SEQRES 6 B 78 GLN ASP PRO GLU ILE VAL GLY THR CYS VAL LYS ILE PRO SEQRES 1 C 78 PHE THR CYS PRO GLU CYS ARG PRO GLU LEU CYS GLY ASP SEQRES 2 C 78 PRO GLY TYR CYS GLU TYR GLY THR THR LYS ASP ALA CYS SEQRES 3 C 78 ASP CYS CYS PRO VAL CYS PHE GLN GLY PRO GLY GLY TYR SEQRES 4 C 78 CYS GLY GLY PRO GLU ASP VAL PHE GLY ILE CYS ALA ASP SEQRES 5 C 78 GLY PHE ALA CYS VAL PRO LEU VAL GLY GLU ARG ASP SER SEQRES 6 C 78 GLN ASP PRO GLU ILE VAL GLY THR CYS VAL LYS ILE PRO SEQRES 1 D 78 PHE THR CYS PRO GLU CYS ARG PRO GLU LEU CYS GLY ASP SEQRES 2 D 78 PRO GLY TYR CYS GLU TYR GLY THR THR LYS ASP ALA CYS SEQRES 3 D 78 ASP CYS CYS PRO VAL CYS PHE GLN GLY PRO GLY GLY TYR SEQRES 4 D 78 CYS GLY GLY PRO GLU ASP VAL PHE GLY ILE CYS ALA ASP SEQRES 5 D 78 GLY PHE ALA CYS VAL PRO LEU VAL GLY GLU ARG ASP SER SEQRES 6 D 78 GLN ASP PRO GLU ILE VAL GLY THR CYS VAL LYS ILE PRO FORMUL 5 HOH *41(H2 O) HELIX 1 1 ARG A 7 CYS A 11 5 5 HELIX 2 2 GLY A 42 VAL A 46 5 5 HELIX 3 3 GLY B 42 VAL B 46 5 5 HELIX 4 4 ARG C 7 CYS C 11 5 5 HELIX 5 5 GLY C 42 VAL C 46 5 5 HELIX 6 6 ARG D 7 CYS D 11 5 5 SHEET 1 AA 2 THR A 21 THR A 22 0 SHEET 2 AA 2 VAL A 31 CYS A 32 -1 O VAL A 31 N THR A 22 SHEET 1 AB 3 TYR A 39 CYS A 40 0 SHEET 2 AB 3 GLY A 72 LYS A 76 -1 O GLY A 72 N CYS A 40 SHEET 3 AB 3 PHE A 54 VAL A 57 -1 O ALA A 55 N VAL A 75 SHEET 1 BA 2 THR B 21 LYS B 23 0 SHEET 2 BA 2 PRO B 30 CYS B 32 -1 O VAL B 31 N THR B 22 SHEET 1 BB 3 TYR B 39 CYS B 40 0 SHEET 2 BB 3 GLY B 72 LYS B 76 -1 O GLY B 72 N CYS B 40 SHEET 3 BB 3 PHE B 54 VAL B 57 -1 O ALA B 55 N VAL B 75 SHEET 1 CA 2 THR C 21 THR C 22 0 SHEET 2 CA 2 VAL C 31 CYS C 32 -1 O VAL C 31 N THR C 22 SHEET 1 CB 3 TYR C 39 CYS C 40 0 SHEET 2 CB 3 GLY C 72 LYS C 76 -1 O GLY C 72 N CYS C 40 SHEET 3 CB 3 PHE C 54 VAL C 57 -1 O ALA C 55 N VAL C 75 SHEET 1 DA 2 THR D 21 THR D 22 0 SHEET 2 DA 2 VAL D 31 CYS D 32 -1 O VAL D 31 N THR D 22 SHEET 1 DB 2 PHE D 54 VAL D 57 0 SHEET 2 DB 2 THR D 73 LYS D 76 -1 O THR D 73 N VAL D 57 SSBOND 1 CYS A 3 CYS A 26 1555 1555 1.99 SSBOND 2 CYS A 6 CYS A 28 1555 1555 2.00 SSBOND 3 CYS A 11 CYS A 29 1555 1555 2.02 SSBOND 4 CYS A 17 CYS A 32 1555 1555 2.04 SSBOND 5 CYS A 40 CYS A 56 1555 1555 1.98 SSBOND 6 CYS A 50 CYS A 74 1555 1555 2.02 SSBOND 7 CYS B 3 CYS B 26 1555 1555 2.01 SSBOND 8 CYS B 6 CYS B 28 1555 1555 2.03 SSBOND 9 CYS B 11 CYS B 29 1555 1555 2.03 SSBOND 10 CYS B 17 CYS B 32 1555 1555 2.03 SSBOND 11 CYS B 40 CYS B 56 1555 1555 2.02 SSBOND 12 CYS B 50 CYS B 74 1555 1555 2.01 SSBOND 13 CYS C 3 CYS C 26 1555 1555 2.01 SSBOND 14 CYS C 6 CYS C 28 1555 1555 2.06 SSBOND 15 CYS C 11 CYS C 29 1555 1555 2.07 SSBOND 16 CYS C 17 CYS C 32 1555 1555 2.04 SSBOND 17 CYS C 40 CYS C 56 1555 1555 2.05 SSBOND 18 CYS C 50 CYS C 74 1555 1555 2.01 SSBOND 19 CYS D 3 CYS D 26 1555 1555 2.03 SSBOND 20 CYS D 6 CYS D 28 1555 1555 2.02 SSBOND 21 CYS D 11 CYS D 29 1555 1555 1.99 SSBOND 22 CYS D 17 CYS D 32 1555 1555 2.02 SSBOND 23 CYS D 40 CYS D 56 1555 1555 2.04 SSBOND 24 CYS D 50 CYS D 74 1555 1555 2.02 CRYST1 62.247 62.247 169.297 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016065 0.009275 0.000000 0.00000 SCALE2 0.000000 0.018550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005907 0.00000