HEADER HYDROLASE 16-AUG-11 3ZXX TITLE STRUCTURE OF SELF-CLEAVED PROTEASE DOMAIN OF PATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-295; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLORON DIDEMNI; SOURCE 3 ORGANISM_TAXID: 1216; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHISTEV KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,D.ZOLLMAN,J.VENDOME,A.RAAB,W.E.HOUSSEN,M.C.SMITH,M.JASPARS, AUTHOR 2 J.H.NAISMITH REVDAT 5 20-DEC-23 3ZXX 1 REMARK REVDAT 4 06-NOV-13 3ZXX 1 AUTHOR REVDAT 3 16-JAN-13 3ZXX 1 JRNL REVDAT 2 05-DEC-12 3ZXX 1 JRNL REVDAT 1 29-AUG-12 3ZXX 0 JRNL AUTH W.E.HOUSSEN,J.KOEHNKE,D.ZOLLMAN,J.VENDOME,A.RAAB,M.C.SMITH, JRNL AUTH 2 J.H.NAISMITH,M.JASPARS JRNL TITL THE DISCOVERY OF NEW CYANOBACTINS FROM CYANOTHECE PCC 7425 JRNL TITL 2 DEFINES A NEW SIGNATURE FOR PROCESSING OF PATELLAMIDES. JRNL REF CHEMBIOCHEM V. 13 2683 2012 JRNL REFN ISSN 1439-4227 JRNL PMID 23169461 JRNL DOI 10.1002/CBIC.201200661 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 20196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.1790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -1.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.025 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1982 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1323 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2697 ; 1.210 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3229 ; 0.876 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 5.317 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;31.842 ;23.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;11.955 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2253 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 378 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5902 -2.5954 -7.2531 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0790 REMARK 3 T33: 0.0357 T12: 0.0057 REMARK 3 T13: -0.0015 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 8.4227 L22: 14.5398 REMARK 3 L33: 5.8524 L12: -3.0601 REMARK 3 L13: 0.9556 L23: -0.4546 REMARK 3 S TENSOR REMARK 3 S11: 0.2626 S12: 0.3225 S13: 0.2062 REMARK 3 S21: -0.5240 S22: -0.1975 S23: 0.1841 REMARK 3 S31: -0.3110 S32: -0.3195 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5492 0.8428 4.1211 REMARK 3 T TENSOR REMARK 3 T11: 0.0043 T22: 0.0086 REMARK 3 T33: 0.0048 T12: 0.0019 REMARK 3 T13: -0.0015 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.9117 L22: 0.5752 REMARK 3 L33: 0.7637 L12: 0.0199 REMARK 3 L13: 0.0016 L23: 0.0934 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: -0.0465 S13: -0.0095 REMARK 3 S21: 0.0366 S22: -0.0008 S23: -0.0413 REMARK 3 S31: 0.0268 S32: 0.0450 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8998 8.4287 -10.8803 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.0725 REMARK 3 T33: 0.0111 T12: -0.0222 REMARK 3 T13: 0.0110 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.5736 L22: 15.1055 REMARK 3 L33: 2.4065 L12: -0.1658 REMARK 3 L13: 0.5138 L23: 2.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: 0.2134 S13: 0.0427 REMARK 3 S21: -0.4707 S22: 0.1545 S23: -0.1602 REMARK 3 S31: -0.1988 S32: 0.2340 S33: -0.0829 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0155 13.7840 -9.9950 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.0552 REMARK 3 T33: 0.0670 T12: -0.0004 REMARK 3 T13: 0.0083 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.8979 L22: 2.5255 REMARK 3 L33: 3.0442 L12: 1.3827 REMARK 3 L13: 1.8336 L23: 1.2301 REMARK 3 S TENSOR REMARK 3 S11: -0.1486 S12: 0.1231 S13: 0.1856 REMARK 3 S21: -0.1669 S22: 0.0183 S23: -0.0372 REMARK 3 S31: -0.3131 S32: 0.0984 S33: 0.1302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ZXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20196 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 13.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 19.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DBI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.92000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 10.46000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 LEU A -4 REMARK 465 VAL A -3 REMARK 465 PRO A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 THR A 47 REMARK 465 ALA A 48 REMARK 465 ALA A 49 REMARK 465 ARG A 50 REMARK 465 SER A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 259 REMARK 465 ASP A 260 REMARK 465 ASP A 261 REMARK 465 ALA A 262 REMARK 465 PRO A 263 REMARK 465 GLU A 264 REMARK 465 GLN A 265 REMARK 465 SER A 289 REMARK 465 GLU A 290 REMARK 465 GLU A 291 REMARK 465 LEU A 292 REMARK 465 ALA A 293 REMARK 465 THR A 294 REMARK 465 ALA A 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2017 O HOH A 2018 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 95 O HOH A 2241 2655 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 126 42.73 -147.03 REMARK 500 LEU A 270 -142.42 56.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2009 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2017 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2018 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2038 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A2045 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2087 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2132 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A2146 DISTANCE = 5.89 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZXY RELATED DB: PDB REMARK 900 STRUCTURE OF S218A MUTANT OF THE PROTEASE DOMAIN OF PATA DBREF 3ZXX A 2 295 UNP Q52QI9 Q52QI9_PRODI 2 295 SEQADV 3ZXX MET A -11 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX HIS A -10 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX HIS A -9 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX HIS A -8 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX HIS A -7 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX HIS A -6 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX HIS A -5 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX LEU A -4 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX VAL A -3 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX PRO A -2 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX ARG A -1 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX GLY A 0 UNP Q52QI9 EXPRESSION TAG SEQADV 3ZXX SER A 1 UNP Q52QI9 EXPRESSION TAG SEQRES 1 A 307 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER SEQRES 2 A 307 ASN ARG ASP ILE LEU ARG THR LEU SER LEU LYS GLY ASP SEQRES 3 A 307 HIS ASN ILE ARG VAL ALA ILE LEU ASP GLY PRO VAL ASP SEQRES 4 A 307 ILE ALA HIS PRO CYS PHE GLN GLY ALA ASP LEU THR VAL SEQRES 5 A 307 LEU PRO THR LEU ALA PRO THR ALA ALA ARG SER ASP GLY SEQRES 6 A 307 PHE MET SER ALA HIS GLY THR HIS VAL ALA SER ILE ILE SEQRES 7 A 307 PHE GLY GLN PRO GLU THR SER VAL PRO GLY ILE ALA PRO SEQRES 8 A 307 GLN CYS ARG GLY LEU ILE VAL PRO ILE PHE SER ASP ASP SEQRES 9 A 307 ARG ARG ARG ILE THR GLN LEU ASP LEU ALA ARG GLY ILE SEQRES 10 A 307 GLU ARG ALA VAL ASN ALA GLY ALA HIS ILE ILE ASN ILE SEQRES 11 A 307 SER GLY GLY GLU LEU THR ASP PHE GLY GLU ALA ASP GLY SEQRES 12 A 307 TRP LEU GLU ASN ALA VAL SER LEU CYS ARG GLN ASN ASN SEQRES 13 A 307 VAL LEU LEU VAL ALA ALA ALA GLY ASN ASN GLY CYS ASP SEQRES 14 A 307 CYS LEU HIS VAL PRO ALA ALA LEU PRO ALA VAL LEU ALA SEQRES 15 A 307 VAL GLY ALA MET ASP ASP HIS GLY HIS PRO LEU ASP PHE SEQRES 16 A 307 SER ASN TRP GLY SER THR TYR GLU GLN GLN GLY ILE LEU SEQRES 17 A 307 ALA PRO GLY GLU ASP ILE LEU GLY ALA LYS PRO GLY GLY SEQRES 18 A 307 GLY THR GLU ARG LEU SER GLY THR SER PHE ALA THR PRO SEQRES 19 A 307 ILE VAL SER GLY VAL ALA ALA LEU LEU LEU SER GLU GLN SEQRES 20 A 307 VAL ARG ARG GLY GLU THR PRO ASP PRO GLN LYS VAL ARG SEQRES 21 A 307 GLN LEU LEU LEU GLN SER ALA LEU PRO CYS ASP ASP ASP SEQRES 22 A 307 ALA PRO GLU GLN ALA ARG ARG CYS LEU ALA GLY ARG LEU SEQRES 23 A 307 ASN VAL SER GLY ALA PHE THR LEU LEU LYS GLY GLY ASN SEQRES 24 A 307 MET SER GLU GLU LEU ALA THR ALA FORMUL 2 HOH *397(H2 O) HELIX 1 1 HIS A 30 GLN A 34 5 5 HELIX 2 2 HIS A 58 GLY A 68 1 11 HELIX 3 3 THR A 97 ALA A 111 1 15 HELIX 4 4 ASP A 130 ASN A 143 1 14 HELIX 5 5 SER A 188 GLN A 193 1 6 HELIX 6 6 GLY A 216 ARG A 238 1 23 HELIX 7 7 ASP A 243 ALA A 255 1 13 HELIX 8 8 ALA A 266 LEU A 270 5 5 HELIX 9 9 ASN A 275 LYS A 284 1 10 SHEET 1 AA 7 ASP A 37 VAL A 40 0 SHEET 2 AA 7 ARG A 82 PRO A 87 1 O GLY A 83 N THR A 39 SHEET 3 AA 7 ARG A 18 ASP A 23 1 O VAL A 19 N LEU A 84 SHEET 4 AA 7 ILE A 115 ILE A 118 1 O ILE A 115 N ALA A 20 SHEET 5 AA 7 LEU A 146 ALA A 150 1 O LEU A 146 N ILE A 116 SHEET 6 AA 7 LEU A 169 MET A 174 1 O LEU A 169 N ALA A 149 SHEET 7 AA 7 GLY A 194 PRO A 198 1 O ILE A 195 N GLY A 172 SHEET 1 AB 2 GLU A 122 LEU A 123 0 SHEET 2 AB 2 HIS A 160 VAL A 161 -1 O VAL A 161 N GLU A 122 SHEET 1 AC 2 ILE A 202 ALA A 205 0 SHEET 2 AC 2 THR A 211 LEU A 214 -1 O GLU A 212 N GLY A 204 SSBOND 1 CYS A 156 CYS A 158 1555 1555 2.03 SSBOND 2 CYS A 258 CYS A 269 1555 1555 2.06 CISPEP 1 VAL A 161 PRO A 162 0 7.93 CRYST1 84.210 84.210 41.840 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023901 0.00000