HEADER ENDOCYTOSIS 17-AUG-11 3ZY7 TITLE CRYSTAL STRUCTURE OF COMPUTATIONALLY REDESIGNED GAMMA-ADAPTIN TITLE 2 APPENDAGE DOMAIN FORMING A SYMMETRIC HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-1 COMPLEX SUBUNIT GAMMA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: COMPUTATIONALLY REDESIGNED GAMMA-ADAPTIN APPENDAGE DOMAIN, COMPND 5 RESIDUES 704-822; COMPND 6 SYNONYM: REDESIGNED CLATHRIN ADAPTOR AP1, ADAPTER-RELATED PROTEIN CO COMPND 7 ADAPTOR PROTEIN COMPLEX AP-1 SUBUNIT GAMMA-1, CLATHRIN ASSEMBLY COMPND 8 PROTEIN COMPLEX 1 GAMMA-1 LARGE CHAIN, GAMMA-ADAPTIN, GAMMA1-ADAPTIN, COMPND 9 GOLGI ADAPTOR HA1/AP1 ADAPTIN SUBUNIT GAMMA-1; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-80L MBP FUSION VECTOR KEYWDS ENDOCYTOSIS, PROTEIN DESIGN, COMPUTATIONAL DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR P.B.STRANGES,M.MACHIUS,M.J.MILEY,A.TRIPATHY,B.KUHLMAN REVDAT 3 20-DEC-23 3ZY7 1 REMARK REVDAT 2 11-JAN-12 3ZY7 1 JRNL REVDAT 1 28-DEC-11 3ZY7 0 JRNL AUTH P.B.STRANGES,M.MACHIUS,M.J.MILEY,A.TRIPATHY,B.KUHLMAN JRNL TITL COMPUTATIONAL DESIGN OF A SYMMETRIC HOMODIMER USING JRNL TITL 2 BETA-STRAND ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 20562 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22143762 JRNL DOI 10.1073/PNAS.1115124108 REMARK 2 REMARK 2 RESOLUTION. 1.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 90295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.1405 - 3.3836 0.93 2986 164 0.1916 0.2084 REMARK 3 2 3.3836 - 2.6869 0.99 3109 184 0.1712 0.1814 REMARK 3 3 2.6869 - 2.3477 1.00 3141 149 0.1582 0.1469 REMARK 3 4 2.3477 - 2.1332 1.00 3119 165 0.1421 0.1717 REMARK 3 5 2.1332 - 1.9804 1.00 3073 187 0.1421 0.1638 REMARK 3 6 1.9804 - 1.8637 1.00 3109 152 0.1427 0.1765 REMARK 3 7 1.8637 - 1.7704 1.00 3072 167 0.1426 0.1711 REMARK 3 8 1.7704 - 1.6933 1.00 3126 150 0.1362 0.1789 REMARK 3 9 1.6933 - 1.6282 1.00 3068 185 0.1324 0.1599 REMARK 3 10 1.6282 - 1.5720 1.00 3071 165 0.1278 0.1622 REMARK 3 11 1.5720 - 1.5228 1.00 3104 157 0.1274 0.1457 REMARK 3 12 1.5228 - 1.4793 1.00 3081 169 0.1246 0.1611 REMARK 3 13 1.4793 - 1.4404 0.99 3068 159 0.1217 0.1516 REMARK 3 14 1.4404 - 1.4052 1.00 3095 153 0.1277 0.1856 REMARK 3 15 1.4052 - 1.3733 0.99 3067 159 0.1348 0.1711 REMARK 3 16 1.3733 - 1.3441 0.99 3074 155 0.1373 0.1513 REMARK 3 17 1.3441 - 1.3172 1.00 3083 147 0.1398 0.1637 REMARK 3 18 1.3172 - 1.2923 1.00 3043 170 0.1423 0.1800 REMARK 3 19 1.2923 - 1.2693 1.00 3069 159 0.1464 0.1663 REMARK 3 20 1.2693 - 1.2477 1.00 3091 168 0.1506 0.1809 REMARK 3 21 1.2477 - 1.2276 1.00 3046 161 0.1575 0.2043 REMARK 3 22 1.2276 - 1.2087 1.00 3110 153 0.1716 0.2097 REMARK 3 23 1.2087 - 1.1910 0.99 3059 141 0.1843 0.1778 REMARK 3 24 1.1910 - 1.1742 0.93 2861 154 0.1811 0.2000 REMARK 3 25 1.1742 - 1.1583 0.86 2628 140 0.1956 0.2577 REMARK 3 26 1.1583 - 1.1433 0.77 2406 126 0.2093 0.2543 REMARK 3 27 1.1433 - 1.1290 0.69 2113 104 0.2304 0.2747 REMARK 3 28 1.1290 - 1.1154 0.61 1914 97 0.2403 0.2931 REMARK 3 29 1.1154 - 1.1024 0.54 1664 73 0.2619 0.2956 REMARK 3 30 1.1024 - 1.0900 0.44 1343 89 0.2817 0.2975 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 46.29 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44790 REMARK 3 B22 (A**2) : -0.97220 REMARK 3 B33 (A**2) : 0.52430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05630 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2175 REMARK 3 ANGLE : 1.399 3001 REMARK 3 CHIRALITY : 0.082 342 REMARK 3 PLANARITY : 0.006 403 REMARK 3 DIHEDRAL : 15.058 821 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES -1 TO 0 AND 23-26 ARE REMARK 3 DISORDERED IN CHAINS A AND B REMARK 4 REMARK 4 3ZY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1290049364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90534 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.090 REMARK 200 RESOLUTION RANGE LOW (A) : 23.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A7B REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 20MM MES PH 6M 150MM REMARK 280 NACL WELL SOLUTION: 0.1M NA ACETATE PH 5, 20% (W/V) PEG 8K, 6% REMARK 280 (V/V) 2-PROPANOL CRYOPROTECTANT: WELL SOLUTION PLUS 15% (V/V) REMARK 280 ETHYLENE GLYCOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.12400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 711 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 712 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 713 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 800 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 802 TO TRP REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 803 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 805 TO TYR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 806 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 807 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 809 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 810 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 711 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 712 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 713 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TYR 800 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, HIS 802 TO TRP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 803 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 805 TO TYR REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ALA 806 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 807 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 809 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 810 TO GLU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASN A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 PRO A 26 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ASN B 23 REMARK 465 THR B 24 REMARK 465 ASN B 25 REMARK 465 PRO B 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2102 O HOH A 2129 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 89 ND2 ASN B 112 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 119 -27.06 -145.47 REMARK 500 ASN B 113 35.26 -86.28 REMARK 500 TRP B 119 -29.86 -146.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2052 DISTANCE = 6.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 1123 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A7B RELATED DB: PDB REMARK 900 ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULAR CRYSTALLOGRAPHY, REMARK 900 PART III- THE OPTIMAL DATA COLLECTION WAVELENGTH REMARK 900 RELATED ID: 1GYU RELATED DB: PDB REMARK 900 GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1 REMARK 900 RELATED ID: 1GYW RELATED DB: PDB REMARK 900 GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1 A753D REMARK 900 MUTANT REMARK 900 RELATED ID: 1W63 RELATED DB: PDB REMARK 900 AP1 CLATHRIN ADAPTOR CORE REMARK 900 RELATED ID: 1GYV RELATED DB: PDB REMARK 900 GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1, L762E REMARK 900 MUTANT DBREF 3ZY7 A 2 120 UNP P22892 AP1G1_MOUSE 704 822 DBREF 3ZY7 B 2 120 UNP P22892 AP1G1_MOUSE 704 822 SEQADV 3ZY7 GLY A -1 UNP P22892 EXPRESSION TAG SEQADV 3ZY7 SER A 0 UNP P22892 EXPRESSION TAG SEQADV 3ZY7 MET A 1 UNP P22892 EXPRESSION TAG SEQADV 3ZY7 ASP A 9 UNP P22892 SER 711 ENGINEERED MUTATION SEQADV 3ZY7 ALA A 10 UNP P22892 LYS 712 ENGINEERED MUTATION SEQADV 3ZY7 LEU A 11 UNP P22892 ASN 713 ENGINEERED MUTATION SEQADV 3ZY7 PHE A 98 UNP P22892 TYR 800 ENGINEERED MUTATION SEQADV 3ZY7 TRP A 100 UNP P22892 HIS 802 ENGINEERED MUTATION SEQADV 3ZY7 ASN A 101 UNP P22892 LYS 803 ENGINEERED MUTATION SEQADV 3ZY7 TYR A 103 UNP P22892 SER 805 ENGINEERED MUTATION SEQADV 3ZY7 LYS A 104 UNP P22892 ALA 806 ENGINEERED MUTATION SEQADV 3ZY7 VAL A 105 UNP P22892 MET 807 ENGINEERED MUTATION SEQADV 3ZY7 SER A 107 UNP P22892 ASP 809 ENGINEERED MUTATION SEQADV 3ZY7 GLU A 108 UNP P22892 LEU 810 ENGINEERED MUTATION SEQADV 3ZY7 GLY B -1 UNP P22892 EXPRESSION TAG SEQADV 3ZY7 SER B 0 UNP P22892 EXPRESSION TAG SEQADV 3ZY7 MET B 1 UNP P22892 EXPRESSION TAG SEQADV 3ZY7 ASP B 9 UNP P22892 SER 711 ENGINEERED MUTATION SEQADV 3ZY7 ALA B 10 UNP P22892 LYS 712 ENGINEERED MUTATION SEQADV 3ZY7 LEU B 11 UNP P22892 ASN 713 ENGINEERED MUTATION SEQADV 3ZY7 PHE B 98 UNP P22892 TYR 800 ENGINEERED MUTATION SEQADV 3ZY7 TRP B 100 UNP P22892 HIS 802 ENGINEERED MUTATION SEQADV 3ZY7 ASN B 101 UNP P22892 LYS 803 ENGINEERED MUTATION SEQADV 3ZY7 TYR B 103 UNP P22892 SER 805 ENGINEERED MUTATION SEQADV 3ZY7 LYS B 104 UNP P22892 ALA 806 ENGINEERED MUTATION SEQADV 3ZY7 VAL B 105 UNP P22892 MET 807 ENGINEERED MUTATION SEQADV 3ZY7 SER B 107 UNP P22892 ASP 809 ENGINEERED MUTATION SEQADV 3ZY7 GLU B 108 UNP P22892 LEU 810 ENGINEERED MUTATION SEQRES 1 A 122 GLY SER MET ILE PRO SER ILE THR ALA TYR ASP ALA LEU SEQRES 2 A 122 GLY LEU LYS ILE GLU PHE THR PHE GLU ARG SER ASN THR SEQRES 3 A 122 ASN PRO SER VAL THR VAL ILE THR ILE GLN ALA SER ASN SEQRES 4 A 122 SER THR GLU LEU ASP MET THR ASP PHE VAL PHE GLN ALA SEQRES 5 A 122 ALA VAL PRO LYS THR PHE GLN LEU GLN LEU LEU SER PRO SEQRES 6 A 122 SER SER SER VAL VAL PRO ALA PHE ASN THR GLY THR ILE SEQRES 7 A 122 THR GLN VAL ILE LYS VAL LEU ASN PRO GLN LYS GLN GLN SEQRES 8 A 122 LEU ARG MET ARG ILE LYS LEU THR PHE ASN TRP ASN GLY SEQRES 9 A 122 TYR LYS VAL GLN SER GLU ALA GLU VAL ASN ASN PHE PRO SEQRES 10 A 122 PRO GLN SER TRP GLN SEQRES 1 B 122 GLY SER MET ILE PRO SER ILE THR ALA TYR ASP ALA LEU SEQRES 2 B 122 GLY LEU LYS ILE GLU PHE THR PHE GLU ARG SER ASN THR SEQRES 3 B 122 ASN PRO SER VAL THR VAL ILE THR ILE GLN ALA SER ASN SEQRES 4 B 122 SER THR GLU LEU ASP MET THR ASP PHE VAL PHE GLN ALA SEQRES 5 B 122 ALA VAL PRO LYS THR PHE GLN LEU GLN LEU LEU SER PRO SEQRES 6 B 122 SER SER SER VAL VAL PRO ALA PHE ASN THR GLY THR ILE SEQRES 7 B 122 THR GLN VAL ILE LYS VAL LEU ASN PRO GLN LYS GLN GLN SEQRES 8 B 122 LEU ARG MET ARG ILE LYS LEU THR PHE ASN TRP ASN GLY SEQRES 9 B 122 TYR LYS VAL GLN SER GLU ALA GLU VAL ASN ASN PHE PRO SEQRES 10 B 122 PRO GLN SER TRP GLN HET IPA A1121 4 HET PEG B1121 7 HET PEG B1122 7 HET IPA B1123 4 HETNAM IPA ISOPROPYL ALCOHOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN IPA 2-PROPANOL FORMUL 3 IPA 2(C3 H8 O) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 7 HOH *298(H2 O) HELIX 1 1 PRO A 69 THR A 73 5 5 HELIX 2 2 PRO A 115 TRP A 119 5 5 HELIX 3 3 PRO B 69 THR B 73 5 5 HELIX 4 4 PRO B 115 TRP B 119 5 5 SHEET 1 AA 5 ILE A 5 ALA A 10 0 SHEET 2 AA 5 LEU A 13 GLU A 20 -1 O LEU A 13 N ALA A 10 SHEET 3 AA 5 VAL A 28 ASN A 37 -1 O VAL A 30 N GLU A 20 SHEET 4 AA 5 ILE A 76 LEU A 83 -1 O ILE A 76 N ALA A 35 SHEET 5 AA 5 GLN A 57 LEU A 60 -1 O GLN A 57 N LEU A 83 SHEET 1 AB 6 THR A 44 ALA A 51 0 SHEET 2 AB 6 MET A 92 TRP A 100 -1 O ARG A 93 N ALA A 51 SHEET 3 AB 6 TYR A 103 VAL A 111 -1 O TYR A 103 N TRP A 100 SHEET 4 AB 6 TYR B 103 VAL B 111 -1 O LYS B 104 N GLU A 108 SHEET 5 AB 6 MET B 92 TRP B 100 -1 O MET B 92 N VAL B 111 SHEET 6 AB 6 THR B 44 ALA B 51 -1 O THR B 44 N ASN B 99 SHEET 1 BA 5 ILE B 5 ALA B 10 0 SHEET 2 BA 5 LEU B 13 GLU B 20 -1 O LEU B 13 N ALA B 10 SHEET 3 BA 5 VAL B 28 ASN B 37 -1 O VAL B 30 N GLU B 20 SHEET 4 BA 5 ILE B 76 LEU B 83 -1 O ILE B 76 N ALA B 35 SHEET 5 BA 5 GLN B 57 LEU B 60 -1 O GLN B 57 N LEU B 83 SITE 1 AC1 2 TYR A 8 ALA A 10 SITE 1 AC2 6 ILE B 2 SER B 4 THR B 18 PHE B 19 SITE 2 AC2 6 GLU B 20 HOH B2027 SITE 1 AC3 9 ASP B 9 ALA B 10 GLY B 12 LEU B 13 SITE 2 AC3 9 LYS B 14 SER B 36 ASN B 37 SER B 38 SITE 3 AC3 9 ASN B 72 SITE 1 AC4 2 TYR B 8 ALA B 10 CRYST1 50.636 44.248 53.017 90.00 91.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019749 0.000000 0.000659 0.00000 SCALE2 0.000000 0.022600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018872 0.00000