data_409D # _entry.id 409D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 409D pdb_0000409d 10.2210/pdb409d/pdb RCSB AR0004 ? ? WWPDB D_1000179209 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-01-13 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-28 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 409D _pdbx_database_status.recvd_initial_deposition_date 1998-06-26 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pan, B.' 1 'Mitra, S.N.' 2 'Sun, L.' 3 'Hart, D.' 4 'Sundaralingam, M.' 5 # _citation.id primary _citation.title 'Crystal structure of an RNA octamer duplex r(CCCIUGGG)2 incorporating tandem I.U wobbles.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 26 _citation.page_first 5699 _citation.page_last 5706 _citation.year 1998 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9838002 _citation.pdbx_database_id_DOI 10.1093/nar/26.24.5699 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pan, B.' 1 ? primary 'Mitra, S.N.' 2 ? primary 'Sun, L.' 3 ? primary 'Hart, D.' 4 ? primary 'Sundaralingam, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*CP*CP*IP*UP*GP*GP*G)-3') ; 2542.562 6 ? ? ? ? 2 water nat water 18.015 26 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCCIUGGG _entity_poly.pdbx_seq_one_letter_code_can CCCIUGGG _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 C n 1 4 I n 1 5 U n 1 6 G n 1 7 G n 1 8 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 I 'RNA linking' y 'INOSINIC ACID' ? 'C10 H13 N4 O8 P' 348.206 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 I 4 4 4 I I A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n B 1 1 C 1 9 9 C C B . n B 1 2 C 2 10 10 C C B . n B 1 3 C 3 11 11 C C B . n B 1 4 I 4 12 12 I I B . n B 1 5 U 5 13 13 U U B . n B 1 6 G 6 14 14 G G B . n B 1 7 G 7 15 15 G G B . n B 1 8 G 8 16 16 G G B . n C 1 1 C 1 17 17 C C C . n C 1 2 C 2 18 18 C C C . n C 1 3 C 3 19 19 C C C . n C 1 4 I 4 20 20 I I C . n C 1 5 U 5 21 21 U U C . n C 1 6 G 6 22 22 G G C . n C 1 7 G 7 23 23 G G C . n C 1 8 G 8 24 24 G G C . n D 1 1 C 1 25 25 C C D . n D 1 2 C 2 26 26 C C D . n D 1 3 C 3 27 27 C C D . n D 1 4 I 4 28 28 I I D . n D 1 5 U 5 29 29 U U D . n D 1 6 G 6 30 30 G G D . n D 1 7 G 7 31 31 G G D . n D 1 8 G 8 32 32 G G D . n E 1 1 C 1 33 33 C C E . n E 1 2 C 2 34 34 C C E . n E 1 3 C 3 35 35 C C E . n E 1 4 I 4 36 36 I I E . n E 1 5 U 5 37 37 U U E . n E 1 6 G 6 38 38 G G E . n E 1 7 G 7 39 39 G G E . n E 1 8 G 8 40 40 G G E . n F 1 1 C 1 41 41 C C F . n F 1 2 C 2 42 42 C C F . n F 1 3 C 3 43 43 C C F . n F 1 4 I 4 44 44 I I F . n F 1 5 U 5 45 45 U U F . n F 1 6 G 6 46 46 G G F . n F 1 7 G 7 47 47 G G F . n F 1 8 G 8 48 48 G G F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HOH 1 52 52 HOH HOH A . G 2 HOH 2 57 57 HOH HOH A . G 2 HOH 3 61 61 HOH HOH A . G 2 HOH 4 62 62 HOH HOH A . G 2 HOH 5 65 65 HOH HOH A . G 2 HOH 6 66 66 HOH HOH A . G 2 HOH 7 67 67 HOH HOH A . H 2 HOH 1 58 58 HOH HOH B . I 2 HOH 1 53 53 HOH HOH C . I 2 HOH 2 54 54 HOH HOH C . J 2 HOH 1 55 55 HOH HOH D . J 2 HOH 2 56 56 HOH HOH D . J 2 HOH 3 69 69 HOH HOH D . J 2 HOH 4 73 73 HOH HOH D . J 2 HOH 5 74 74 HOH HOH D . K 2 HOH 1 49 49 HOH HOH E . K 2 HOH 2 59 59 HOH HOH E . K 2 HOH 3 60 60 HOH HOH E . K 2 HOH 4 68 68 HOH HOH E . K 2 HOH 5 72 72 HOH HOH E . L 2 HOH 1 50 50 HOH HOH F . L 2 HOH 2 51 51 HOH HOH F . L 2 HOH 3 63 63 HOH HOH F . L 2 HOH 4 64 64 HOH HOH F . L 2 HOH 5 70 70 HOH HOH F . L 2 HOH 6 71 71 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.1 ? 2 R-AXIS 'data reduction' . ? 3 R-AXIS 'data scaling' . ? 4 # _cell.entry_id 409D _cell.length_a 33.440 _cell.length_b 43.410 _cell.length_c 49.390 _cell.angle_alpha 90.00 _cell.angle_beta 104.70 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 409D _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 # _exptl.entry_id 409D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.89 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.00 _exptl_crystal_grow.pdbx_details 'pH 5.00, VAPOR DIFFUSION, HANGING DROP, temperature 293.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1995-10-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 409D _reflns.observed_criterion_sigma_I 1.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 47.91 _reflns.d_resolution_high 2.50 _reflns.number_obs 3912 _reflns.number_all 4187 _reflns.percent_possible_obs 76.5 _reflns.pdbx_Rmerge_I_obs 0.0480000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.50 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.500 _reflns_shell.d_res_low 2.600 _reflns_shell.percent_possible_all 58.00 _reflns_shell.Rmerge_I_obs 0.1830000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.300 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 409D _refine.ls_number_reflns_obs 3765 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 80.20 _refine.ls_R_factor_obs 0.1850000 _refine.ls_R_factor_all 0.2030000 _refine.ls_R_factor_R_work 0.1850000 _refine.ls_R_factor_R_free 0.2430000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 381 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'R(CCCCGGGG)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1008 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 1034 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.00 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na 8.0 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na 1.00 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.61 _refine_ls_shell.number_reflns_R_work 311 _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs 60.30 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10.00 _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 409D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 409D _struct.title 'CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOBBLES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 409D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'DOUBLE HELIX, I.U WOBBLES, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 409D _struct_ref.pdbx_db_accession 409D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 409D A 1 ? 8 ? 409D 1 ? 8 ? 1 8 2 1 409D B 1 ? 8 ? 409D 9 ? 16 ? 9 16 3 1 409D C 1 ? 8 ? 409D 17 ? 24 ? 17 24 4 1 409D D 1 ? 8 ? 409D 25 ? 32 ? 25 32 5 1 409D E 1 ? 8 ? 409D 33 ? 40 ? 33 40 6 1 409D F 1 ? 8 ? 409D 41 ? 48 ? 41 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H 2 1 C,D,I,J 3 1 E,F,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id 1 2 3 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 1 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 3 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 3 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 3 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A I 4 N1 ? ? ? 1_555 B U 5 O2 ? ? A I 4 B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A I 4 O6 ? ? ? 1_555 B U 5 N3 ? ? A I 4 B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B I 4 O6 ? ? A U 5 B I 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 B I 4 N1 ? ? A U 5 B I 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 6 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 6 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 6 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C C 1 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 17 D G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C C 1 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 17 D G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C C 1 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 17 D G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 18 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 18 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 18 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 6 N1 ? ? C C 19 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 6 O6 ? ? C C 19 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 19 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C I 4 N1 ? ? ? 1_555 D U 5 O2 ? ? C I 20 D U 29 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? C I 4 O6 ? ? ? 1_555 D U 5 N3 ? ? C I 20 D U 29 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? C U 5 N3 ? ? ? 1_555 D I 4 O6 ? ? C U 21 D I 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? C U 5 O2 ? ? ? 1_555 D I 4 N1 ? ? C U 21 D I 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 23 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 23 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 23 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 24 D C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 24 D C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 24 D C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E C 1 N3 ? ? ? 1_555 F G 8 N1 ? ? E C 33 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E C 1 N4 ? ? ? 1_555 F G 8 O6 ? ? E C 33 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E C 1 O2 ? ? ? 1_555 F G 8 N2 ? ? E C 33 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E C 2 N3 ? ? ? 1_555 F G 7 N1 ? ? E C 34 F G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E C 2 N4 ? ? ? 1_555 F G 7 O6 ? ? E C 34 F G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E C 2 O2 ? ? ? 1_555 F G 7 N2 ? ? E C 34 F G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E C 3 N3 ? ? ? 1_555 F G 6 N1 ? ? E C 35 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E C 3 N4 ? ? ? 1_555 F G 6 O6 ? ? E C 35 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E C 3 O2 ? ? ? 1_555 F G 6 N2 ? ? E C 35 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E I 4 N1 ? ? ? 1_555 F U 5 O2 ? ? E I 36 F U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog55 hydrog ? ? E I 4 O6 ? ? ? 1_555 F U 5 N3 ? ? E I 36 F U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog56 hydrog ? ? E U 5 N3 ? ? ? 1_555 F I 4 O6 ? ? E U 37 F I 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? E U 5 O2 ? ? ? 1_555 F I 4 N1 ? ? E U 37 F I 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog58 hydrog ? ? E G 6 N1 ? ? ? 1_555 F C 3 N3 ? ? E G 38 F C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E G 6 N2 ? ? ? 1_555 F C 3 O2 ? ? E G 38 F C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E G 6 O6 ? ? ? 1_555 F C 3 N4 ? ? E G 38 F C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E G 7 N1 ? ? ? 1_555 F C 2 N3 ? ? E G 39 F C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E G 7 N2 ? ? ? 1_555 F C 2 O2 ? ? E G 39 F C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E G 7 O6 ? ? ? 1_555 F C 2 N4 ? ? E G 39 F C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E G 8 N1 ? ? ? 1_555 F C 1 N3 ? ? E G 40 F C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E G 8 N2 ? ? ? 1_555 F C 1 O2 ? ? E G 40 F C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E G 8 O6 ? ? ? 1_555 F C 1 N4 ? ? E G 40 F C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A C 1 ? ? C2 A C 1 ? ? 1.292 1.397 -0.105 0.010 N 2 1 N1 A C 1 ? ? C6 A C 1 ? ? 1.416 1.367 0.049 0.006 N 3 1 N1 A C 3 ? ? C6 A C 3 ? ? 1.319 1.367 -0.048 0.006 N 4 1 N9 B G 15 ? ? C4 B G 15 ? ? 1.317 1.375 -0.058 0.008 N 5 1 N1 C C 18 ? ? C2 C C 18 ? ? 1.315 1.397 -0.082 0.010 N 6 1 N1 C U 21 ? ? C2 C U 21 ? ? 1.440 1.381 0.059 0.009 N 7 1 N1 C U 21 ? ? C6 C U 21 ? ? 1.302 1.375 -0.073 0.009 N 8 1 N9 C G 24 ? ? C4 C G 24 ? ? 1.325 1.375 -0.050 0.008 N 9 1 N9 D G 30 ? ? C4 D G 30 ? ? 1.312 1.375 -0.063 0.008 N 10 1 N1 E C 33 ? ? C2 E C 33 ? ? 1.478 1.397 0.081 0.010 N 11 1 N1 E C 33 ? ? C6 E C 33 ? ? 1.300 1.367 -0.067 0.006 N 12 1 N1 E C 34 ? ? C2 E C 34 ? ? 1.316 1.397 -0.081 0.010 N 13 1 "O4'" F C 43 ? ? "C1'" F C 43 ? ? 1.315 1.412 -0.097 0.013 N 14 1 N1 F C 43 ? ? C2 F C 43 ? ? 1.258 1.397 -0.139 0.010 N 15 1 N1 F C 43 ? ? C6 F C 43 ? ? 1.437 1.367 0.070 0.006 N 16 1 N1 F U 45 ? ? C6 F U 45 ? ? 1.313 1.375 -0.062 0.009 N 17 1 N9 F G 47 ? ? C4 F G 47 ? ? 1.326 1.375 -0.049 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A C 1 ? ? N1 A C 1 ? ? "C1'" A C 1 ? ? 111.22 118.80 -7.58 1.10 N 2 1 C2 B U 13 ? ? N1 B U 13 ? ? "C1'" B U 13 ? ? 125.40 117.70 7.70 1.20 N 3 1 C5 E C 33 ? ? C6 E C 33 ? ? N1 E C 33 ? ? 124.05 121.00 3.05 0.50 N 4 1 C6 E C 33 ? ? N1 E C 33 ? ? "C1'" E C 33 ? ? 112.56 120.80 -8.24 1.20 N 5 1 C2 E C 33 ? ? N1 E C 33 ? ? "C1'" E C 33 ? ? 127.93 118.80 9.13 1.10 N 6 1 "C3'" F C 43 ? ? "C2'" F C 43 ? ? "C1'" F C 43 ? ? 96.77 101.30 -4.53 0.70 N 7 1 "O4'" F C 43 ? ? "C1'" F C 43 ? ? N1 F C 43 ? ? 102.49 108.20 -5.71 0.80 N 8 1 C5 F C 43 ? ? C6 F C 43 ? ? N1 F C 43 ? ? 117.17 121.00 -3.83 0.50 N 9 1 N1 F C 43 ? ? C2 F C 43 ? ? O2 F C 43 ? ? 114.34 118.90 -4.56 0.60 N 10 1 C6 F C 43 ? ? N1 F C 43 ? ? "C1'" F C 43 ? ? 128.88 120.80 8.08 1.20 N 11 1 C2 F C 43 ? ? N1 F C 43 ? ? "C1'" F C 43 ? ? 108.81 118.80 -9.99 1.10 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 1 ? ? 0.075 'SIDE CHAIN' 2 1 C C 17 ? ? 0.109 'SIDE CHAIN' 3 1 C C 19 ? ? 0.079 'SIDE CHAIN' 4 1 C D 26 ? ? 0.106 'SIDE CHAIN' 5 1 C F 42 ? ? 0.087 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 I OP3 O N N 77 I P P N N 78 I OP1 O N N 79 I OP2 O N N 80 I "O5'" O N N 81 I "C5'" C N N 82 I "C4'" C N R 83 I "O4'" O N N 84 I "C3'" C N S 85 I "O3'" O N N 86 I "C2'" C N R 87 I "O2'" O N N 88 I "C1'" C N R 89 I N9 N Y N 90 I C8 C Y N 91 I N7 N Y N 92 I C5 C Y N 93 I C6 C N N 94 I O6 O N N 95 I N1 N N N 96 I C2 C N N 97 I N3 N N N 98 I C4 C Y N 99 I HOP3 H N N 100 I HOP2 H N N 101 I "H5'" H N N 102 I "H5''" H N N 103 I "H4'" H N N 104 I "H3'" H N N 105 I "HO3'" H N N 106 I "H2'" H N N 107 I "HO2'" H N N 108 I "H1'" H N N 109 I H8 H N N 110 I H1 H N N 111 I H2 H N N 112 U OP3 O N N 113 U P P N N 114 U OP1 O N N 115 U OP2 O N N 116 U "O5'" O N N 117 U "C5'" C N N 118 U "C4'" C N R 119 U "O4'" O N N 120 U "C3'" C N S 121 U "O3'" O N N 122 U "C2'" C N R 123 U "O2'" O N N 124 U "C1'" C N R 125 U N1 N N N 126 U C2 C N N 127 U O2 O N N 128 U N3 N N N 129 U C4 C N N 130 U O4 O N N 131 U C5 C N N 132 U C6 C N N 133 U HOP3 H N N 134 U HOP2 H N N 135 U "H5'" H N N 136 U "H5''" H N N 137 U "H4'" H N N 138 U "H3'" H N N 139 U "HO3'" H N N 140 U "H2'" H N N 141 U "HO2'" H N N 142 U "H1'" H N N 143 U H3 H N N 144 U H5 H N N 145 U H6 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 I OP3 P sing N N 79 I OP3 HOP3 sing N N 80 I P OP1 doub N N 81 I P OP2 sing N N 82 I P "O5'" sing N N 83 I OP2 HOP2 sing N N 84 I "O5'" "C5'" sing N N 85 I "C5'" "C4'" sing N N 86 I "C5'" "H5'" sing N N 87 I "C5'" "H5''" sing N N 88 I "C4'" "O4'" sing N N 89 I "C4'" "C3'" sing N N 90 I "C4'" "H4'" sing N N 91 I "O4'" "C1'" sing N N 92 I "C3'" "O3'" sing N N 93 I "C3'" "C2'" sing N N 94 I "C3'" "H3'" sing N N 95 I "O3'" "HO3'" sing N N 96 I "C2'" "O2'" sing N N 97 I "C2'" "C1'" sing N N 98 I "C2'" "H2'" sing N N 99 I "O2'" "HO2'" sing N N 100 I "C1'" N9 sing N N 101 I "C1'" "H1'" sing N N 102 I N9 C8 sing Y N 103 I N9 C4 sing Y N 104 I C8 N7 doub Y N 105 I C8 H8 sing N N 106 I N7 C5 sing Y N 107 I C5 C6 sing N N 108 I C5 C4 doub Y N 109 I C6 O6 doub N N 110 I C6 N1 sing N N 111 I N1 C2 sing N N 112 I N1 H1 sing N N 113 I C2 N3 doub N N 114 I C2 H2 sing N N 115 I N3 C4 sing N N 116 U OP3 P sing N N 117 U OP3 HOP3 sing N N 118 U P OP1 doub N N 119 U P OP2 sing N N 120 U P "O5'" sing N N 121 U OP2 HOP2 sing N N 122 U "O5'" "C5'" sing N N 123 U "C5'" "C4'" sing N N 124 U "C5'" "H5'" sing N N 125 U "C5'" "H5''" sing N N 126 U "C4'" "O4'" sing N N 127 U "C4'" "C3'" sing N N 128 U "C4'" "H4'" sing N N 129 U "O4'" "C1'" sing N N 130 U "C3'" "O3'" sing N N 131 U "C3'" "C2'" sing N N 132 U "C3'" "H3'" sing N N 133 U "O3'" "HO3'" sing N N 134 U "C2'" "O2'" sing N N 135 U "C2'" "C1'" sing N N 136 U "C2'" "H2'" sing N N 137 U "O2'" "HO2'" sing N N 138 U "C1'" N1 sing N N 139 U "C1'" "H1'" sing N N 140 U N1 C2 sing N N 141 U N1 C6 sing N N 142 U C2 O2 doub N N 143 U C2 N3 sing N N 144 U N3 C4 sing N N 145 U N3 H3 sing N N 146 U C4 O4 doub N N 147 U C4 C5 sing N N 148 U C5 C6 doub N N 149 U C5 H5 sing N N 150 U C6 H6 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 409D 'double helix' 409D 'a-form double helix' 409D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 8 1_555 0.166 -0.152 -0.136 5.062 -5.861 0.836 1 A_C1:G16_B A 1 ? B 16 ? 19 1 1 A C 2 1_555 B G 7 1_555 0.225 -0.205 -0.016 1.056 -2.950 -0.876 2 A_C2:G15_B A 2 ? B 15 ? 19 1 1 A C 3 1_555 B G 6 1_555 0.598 -0.308 -0.381 -0.451 -2.077 -2.252 3 A_C3:G14_B A 3 ? B 14 ? 19 1 1 A I 4 1_555 B U 5 1_555 -1.834 -0.472 -0.329 -10.821 -7.327 -0.066 4 A_I4:U13_B A 4 ? B 13 ? 28 ? 1 A U 5 1_555 B I 4 1_555 1.616 -0.540 0.059 -0.393 -2.470 -4.618 5 A_U5:I12_B A 5 ? B 12 ? 28 ? 1 A G 6 1_555 B C 3 1_555 -0.345 -0.276 -0.092 -0.668 -7.833 -0.136 6 A_G6:C11_B A 6 ? B 11 ? 19 1 1 A G 7 1_555 B C 2 1_555 -0.499 -0.353 -0.522 -6.732 -10.192 0.400 7 A_G7:C10_B A 7 ? B 10 ? 19 1 1 A G 8 1_555 B C 1 1_555 0.361 -0.090 -0.084 1.331 -1.679 0.017 8 A_G8:C9_B A 8 ? B 9 ? 19 1 1 C C 1 1_555 D G 8 1_555 -0.523 -0.080 -0.153 1.891 -3.213 -1.160 9 C_C17:G32_D C 17 ? D 32 ? 19 1 1 C C 2 1_555 D G 7 1_555 0.304 -0.275 -0.127 3.611 -3.085 -2.328 10 C_C18:G31_D C 18 ? D 31 ? 19 1 1 C C 3 1_555 D G 6 1_555 0.734 -0.349 -0.027 -1.463 -3.449 -2.041 11 C_C19:G30_D C 19 ? D 30 ? 19 1 1 C I 4 1_555 D U 5 1_555 -2.028 -0.527 0.081 -2.742 -5.200 0.126 12 C_I20:U29_D C 20 ? D 29 ? 28 ? 1 C U 5 1_555 D I 4 1_555 2.365 -0.508 -0.055 -1.568 -4.680 -1.145 13 C_U21:I28_D C 21 ? D 28 ? 28 ? 1 C G 6 1_555 D C 3 1_555 0.099 -0.153 -0.016 -2.211 -0.104 -1.685 14 C_G22:C27_D C 22 ? D 27 ? 19 1 1 C G 7 1_555 D C 2 1_555 -0.091 -0.078 -0.090 -1.465 -4.988 -1.047 15 C_G23:C26_D C 23 ? D 26 ? 19 1 1 C G 8 1_555 D C 1 1_555 0.677 -0.115 0.069 -4.004 -2.079 -0.305 16 C_G24:C25_D C 24 ? D 25 ? 19 1 1 E C 1 1_555 F G 8 1_555 -0.063 -0.126 -0.006 4.029 -2.949 -4.632 17 E_C33:G48_F E 33 ? F 48 ? 19 1 1 E C 2 1_555 F G 7 1_555 -0.049 -0.187 0.125 2.099 -3.910 1.386 18 E_C34:G47_F E 34 ? F 47 ? 19 1 1 E C 3 1_555 F G 6 1_555 -0.464 -0.093 -0.262 -0.583 -1.447 -2.571 19 E_C35:G46_F E 35 ? F 46 ? 19 1 1 E I 4 1_555 F U 5 1_555 -2.014 -0.568 0.049 -5.336 -0.732 -2.924 20 E_I36:U45_F E 36 ? F 45 ? 28 ? 1 E U 5 1_555 F I 4 1_555 1.653 -0.429 -0.095 3.285 -1.978 1.070 21 E_U37:I44_F E 37 ? F 44 ? 28 ? 1 E G 6 1_555 F C 3 1_555 -0.022 -0.227 -0.227 -0.414 -1.082 0.333 22 E_G38:C43_F E 38 ? F 43 ? 19 1 1 E G 7 1_555 F C 2 1_555 0.097 -0.190 0.525 2.849 -4.164 -1.234 23 E_G39:C42_F E 39 ? F 42 ? 19 1 1 E G 8 1_555 F C 1 1_555 -0.813 -0.334 -0.038 -3.092 -9.795 1.343 24 E_G40:C41_F E 40 ? F 41 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 8 1_555 A C 2 1_555 B G 7 1_555 -0.750 -1.582 3.235 -7.221 5.595 35.785 -3.239 0.231 3.051 8.927 11.521 36.895 1 AA_C1C2:G15G16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A C 2 1_555 B G 7 1_555 A C 3 1_555 B G 6 1_555 -0.740 -2.069 3.358 1.580 9.400 30.221 -5.406 1.628 2.573 17.490 -2.940 31.656 2 AA_C2C3:G14G15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A C 3 1_555 B G 6 1_555 A I 4 1_555 B U 5 1_555 0.084 -2.037 3.677 -3.539 7.223 15.991 -10.725 -2.317 2.456 24.079 11.798 17.888 3 AA_C3I4:U13G14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A I 4 1_555 B U 5 1_555 A U 5 1_555 B I 4 1_555 -0.060 -1.124 3.176 -3.005 8.291 49.741 -1.876 -0.131 2.963 9.768 3.541 50.468 4 AA_I4U5:I12U13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A U 5 1_555 B I 4 1_555 A G 6 1_555 B C 3 1_555 0.565 -1.740 3.051 1.328 13.116 27.670 -5.432 -0.854 2.058 25.660 -2.598 30.595 5 AA_U5G6:C11I12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A G 6 1_555 B C 3 1_555 A G 7 1_555 B C 2 1_555 0.023 -1.732 3.710 3.732 4.080 28.862 -4.379 0.835 3.414 8.091 -7.401 29.376 6 AA_G6G7:C10C11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A G 7 1_555 B C 2 1_555 A G 8 1_555 B C 1 1_555 0.346 -1.515 3.185 1.710 4.488 37.604 -2.879 -0.325 3.003 6.928 -2.639 37.898 7 AA_G7G8:C9C10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 C C 1 1_555 D G 8 1_555 C C 2 1_555 D G 7 1_555 -0.462 -1.639 3.263 -6.052 1.910 33.018 -3.146 -0.188 3.198 3.323 10.527 33.606 8 CC_C17C18:G31G32_DD C 17 ? D 32 ? C 18 ? D 31 ? 1 C C 2 1_555 D G 7 1_555 C C 3 1_555 D G 6 1_555 -0.172 -1.776 3.528 -0.165 7.846 38.705 -3.581 0.235 3.124 11.692 0.246 39.462 9 CC_C18C19:G30G31_DD C 18 ? D 31 ? C 19 ? D 30 ? 1 C C 3 1_555 D G 6 1_555 C I 4 1_555 D U 5 1_555 1.090 -2.601 3.197 1.916 12.031 16.129 -11.470 -2.464 1.122 36.798 -5.860 20.188 10 CC_C19I20:U29G30_DD C 19 ? D 30 ? C 20 ? D 29 ? 1 C I 4 1_555 D U 5 1_555 C U 5 1_555 D I 4 1_555 0.067 -1.553 3.349 0.942 4.595 49.436 -2.189 -0.010 3.203 5.480 -1.123 49.644 11 CC_I20U21:I28U29_DD C 20 ? D 29 ? C 21 ? D 28 ? 1 C U 5 1_555 D I 4 1_555 C G 6 1_555 D C 3 1_555 -1.044 -1.617 3.417 -3.418 6.132 18.168 -7.785 1.414 2.868 18.545 10.336 19.467 12 CC_U21G22:C27I28_DD C 21 ? D 28 ? C 22 ? D 27 ? 1 C G 6 1_555 D C 3 1_555 C G 7 1_555 D C 2 1_555 0.441 -1.774 3.306 5.063 4.350 29.997 -4.190 0.146 3.056 8.275 -9.632 30.714 13 CC_G22G23:C26C27_DD C 22 ? D 27 ? C 23 ? D 26 ? 1 C G 7 1_555 D C 2 1_555 C G 8 1_555 D C 1 1_555 1.167 -2.177 3.304 3.268 7.610 37.401 -4.239 -1.386 2.910 11.692 -5.021 38.275 14 CC_G23G24:C25C26_DD C 23 ? D 26 ? C 24 ? D 25 ? 1 E C 1 1_555 F G 8 1_555 E C 2 1_555 F G 7 1_555 -0.422 -1.954 3.175 -6.205 7.379 32.813 -4.400 -0.185 2.717 12.723 10.699 34.163 15 EE_C33C34:G47G48_FF E 33 ? F 48 ? E 34 ? F 47 ? 1 E C 2 1_555 F G 7 1_555 E C 3 1_555 F G 6 1_555 -0.781 -1.812 3.212 -0.006 8.464 33.241 -4.293 1.324 2.684 14.504 0.011 34.273 16 EE_C34C35:G46G47_FF E 34 ? F 47 ? E 35 ? F 46 ? 1 E C 3 1_555 F G 6 1_555 E I 4 1_555 F U 5 1_555 1.388 -2.551 3.752 0.832 -0.330 13.904 -10.144 -4.783 3.887 -1.361 -3.434 13.932 17 EE_C35I36:U45G46_FF E 35 ? F 46 ? E 36 ? F 45 ? 1 E I 4 1_555 F U 5 1_555 E U 5 1_555 F I 4 1_555 0.511 -1.656 2.917 1.336 8.515 46.705 -2.644 -0.543 2.607 10.634 -1.668 47.450 18 EE_I36U37:I44U45_FF E 36 ? F 45 ? E 37 ? F 44 ? 1 E U 5 1_555 F I 4 1_555 E G 6 1_555 F C 3 1_555 -1.251 -1.442 3.650 -0.880 1.482 30.353 -3.081 2.189 3.611 2.828 1.679 30.401 19 EE_U37G38:C43I44_FF E 37 ? F 44 ? E 38 ? F 43 ? 1 E G 6 1_555 F C 3 1_555 E G 7 1_555 F C 2 1_555 0.779 -1.886 2.859 -0.606 12.104 31.884 -4.707 -1.405 2.015 21.104 1.057 34.054 20 EE_G38G39:C42C43_FF E 38 ? F 43 ? E 39 ? F 42 ? 1 E G 7 1_555 F C 2 1_555 E G 8 1_555 F C 1 1_555 0.317 -1.904 3.357 7.362 10.999 28.162 -5.531 0.732 2.464 21.186 -14.182 31.060 21 EE_G39G40:C41C42_FF E 39 ? F 42 ? E 40 ? F 41 ? # _pdbx_initial_refinement_model.accession_code 1RXA _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'R(CCCCGGGG)' # _atom_sites.entry_id 409D _atom_sites.fract_transf_matrix[1][1] 0.029904 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007845 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023036 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020932 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_