data_409D
# 
_entry.id   409D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.389 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   409D         pdb_0000409d 10.2210/pdb409d/pdb 
RCSB  AR0004       ?            ?                   
WWPDB D_1000179209 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1999-01-13 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-28 
5 'Structure model' 1 4 2024-04-03 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 5 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom                
2 4 'Structure model' chem_comp_bond                
3 4 'Structure model' database_2                    
4 5 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        409D 
_pdbx_database_status.recvd_initial_deposition_date   1998-06-26 
_pdbx_database_status.deposit_site                    NDB 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Pan, B.'           1 
'Mitra, S.N.'       2 
'Sun, L.'           3 
'Hart, D.'          4 
'Sundaralingam, M.' 5 
# 
_citation.id                        primary 
_citation.title                     'Crystal structure of an RNA octamer duplex r(CCCIUGGG)2 incorporating tandem I.U wobbles.' 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            26 
_citation.page_first                5699 
_citation.page_last                 5706 
_citation.year                      1998 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   9838002 
_citation.pdbx_database_id_DOI      10.1093/nar/26.24.5699 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Pan, B.'           1 ? 
primary 'Mitra, S.N.'       2 ? 
primary 'Sun, L.'           3 ? 
primary 'Hart, D.'          4 ? 
primary 'Sundaralingam, M.' 5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;RNA (5'-R(*CP*CP*CP*IP*UP*GP*GP*G)-3')
;
2542.562 6  ? ? ? ? 
2 water   nat water                                    18.015   26 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       CCCIUGGG 
_entity_poly.pdbx_seq_one_letter_code_can   CCCIUGGG 
_entity_poly.pdbx_strand_id                 A,B,C,D,E,F 
_entity_poly.pdbx_target_identifier         ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 C n 
1 2 C n 
1 3 C n 
1 4 I n 
1 5 U n 
1 6 G n 
1 7 G n 
1 8 G n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
HOH non-polymer   . WATER                        ? 'H2 O'            18.015  
I   'RNA linking' y 'INOSINIC ACID'              ? 'C10 H13 N4 O8 P' 348.206 
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 C 1 1  1  C C A . n 
A 1 2 C 2 2  2  C C A . n 
A 1 3 C 3 3  3  C C A . n 
A 1 4 I 4 4  4  I I A . n 
A 1 5 U 5 5  5  U U A . n 
A 1 6 G 6 6  6  G G A . n 
A 1 7 G 7 7  7  G G A . n 
A 1 8 G 8 8  8  G G A . n 
B 1 1 C 1 9  9  C C B . n 
B 1 2 C 2 10 10 C C B . n 
B 1 3 C 3 11 11 C C B . n 
B 1 4 I 4 12 12 I I B . n 
B 1 5 U 5 13 13 U U B . n 
B 1 6 G 6 14 14 G G B . n 
B 1 7 G 7 15 15 G G B . n 
B 1 8 G 8 16 16 G G B . n 
C 1 1 C 1 17 17 C C C . n 
C 1 2 C 2 18 18 C C C . n 
C 1 3 C 3 19 19 C C C . n 
C 1 4 I 4 20 20 I I C . n 
C 1 5 U 5 21 21 U U C . n 
C 1 6 G 6 22 22 G G C . n 
C 1 7 G 7 23 23 G G C . n 
C 1 8 G 8 24 24 G G C . n 
D 1 1 C 1 25 25 C C D . n 
D 1 2 C 2 26 26 C C D . n 
D 1 3 C 3 27 27 C C D . n 
D 1 4 I 4 28 28 I I D . n 
D 1 5 U 5 29 29 U U D . n 
D 1 6 G 6 30 30 G G D . n 
D 1 7 G 7 31 31 G G D . n 
D 1 8 G 8 32 32 G G D . n 
E 1 1 C 1 33 33 C C E . n 
E 1 2 C 2 34 34 C C E . n 
E 1 3 C 3 35 35 C C E . n 
E 1 4 I 4 36 36 I I E . n 
E 1 5 U 5 37 37 U U E . n 
E 1 6 G 6 38 38 G G E . n 
E 1 7 G 7 39 39 G G E . n 
E 1 8 G 8 40 40 G G E . n 
F 1 1 C 1 41 41 C C F . n 
F 1 2 C 2 42 42 C C F . n 
F 1 3 C 3 43 43 C C F . n 
F 1 4 I 4 44 44 I I F . n 
F 1 5 U 5 45 45 U U F . n 
F 1 6 G 6 46 46 G G F . n 
F 1 7 G 7 47 47 G G F . n 
F 1 8 G 8 48 48 G G F . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
G 2 HOH 1 52 52 HOH HOH A . 
G 2 HOH 2 57 57 HOH HOH A . 
G 2 HOH 3 61 61 HOH HOH A . 
G 2 HOH 4 62 62 HOH HOH A . 
G 2 HOH 5 65 65 HOH HOH A . 
G 2 HOH 6 66 66 HOH HOH A . 
G 2 HOH 7 67 67 HOH HOH A . 
H 2 HOH 1 58 58 HOH HOH B . 
I 2 HOH 1 53 53 HOH HOH C . 
I 2 HOH 2 54 54 HOH HOH C . 
J 2 HOH 1 55 55 HOH HOH D . 
J 2 HOH 2 56 56 HOH HOH D . 
J 2 HOH 3 69 69 HOH HOH D . 
J 2 HOH 4 73 73 HOH HOH D . 
J 2 HOH 5 74 74 HOH HOH D . 
K 2 HOH 1 49 49 HOH HOH E . 
K 2 HOH 2 59 59 HOH HOH E . 
K 2 HOH 3 60 60 HOH HOH E . 
K 2 HOH 4 68 68 HOH HOH E . 
K 2 HOH 5 72 72 HOH HOH E . 
L 2 HOH 1 50 50 HOH HOH F . 
L 2 HOH 2 51 51 HOH HOH F . 
L 2 HOH 3 63 63 HOH HOH F . 
L 2 HOH 4 64 64 HOH HOH F . 
L 2 HOH 5 70 70 HOH HOH F . 
L 2 HOH 6 71 71 HOH HOH F . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
AMoRE  phasing          .   ? 1 
X-PLOR refinement       3.1 ? 2 
R-AXIS 'data reduction' .   ? 3 
R-AXIS 'data scaling'   .   ? 4 
# 
_cell.entry_id           409D 
_cell.length_a           33.440 
_cell.length_b           43.410 
_cell.length_c           49.390 
_cell.angle_alpha        90.00 
_cell.angle_beta         104.70 
_cell.angle_gamma        90.00 
_cell.Z_PDB              12 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         409D 
_symmetry.space_group_name_H-M             'P 1 21 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     monoclinic 
_symmetry.Int_Tables_number                4 
# 
_exptl.entry_id          409D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.27 
_exptl_crystal.density_percent_sol   45.89 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            293.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              5.00 
_exptl_crystal_grow.pdbx_details    'pH 5.00, VAPOR DIFFUSION, HANGING DROP, temperature 293.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 'SODIUM CACODYLATE' ? ? ? 
1 2 1 MGCL2               ? ? ? 
1 3 1 SPERMINE            ? ? ? 
1 4 1 MPD                 ? ? ? 
1 5 2 MPD                 ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           293.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IIC' 
_diffrn_detector.pdbx_collection_date   1995-10-02 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        RIGAKU 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.5418 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     409D 
_reflns.observed_criterion_sigma_I   1.00 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             47.91 
_reflns.d_resolution_high            2.50 
_reflns.number_obs                   3912 
_reflns.number_all                   4187 
_reflns.percent_possible_obs         76.5 
_reflns.pdbx_Rmerge_I_obs            0.0480000 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        10.70 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              1.50 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             2.500 
_reflns_shell.d_res_low              2.600 
_reflns_shell.percent_possible_all   58.00 
_reflns_shell.Rmerge_I_obs           0.1830000 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    2.300 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 409D 
_refine.ls_number_reflns_obs                     3765 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.00 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.00 
_refine.ls_d_res_high                            2.50 
_refine.ls_percent_reflns_obs                    80.20 
_refine.ls_R_factor_obs                          0.1850000 
_refine.ls_R_factor_all                          0.2030000 
_refine.ls_R_factor_R_work                       0.1850000 
_refine.ls_R_factor_R_free                       0.2430000 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10.0 
_refine.ls_number_reflns_R_free                  381 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      'R(CCCCGGGG)' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   1008 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             26 
_refine_hist.number_atoms_total               1034 
_refine_hist.d_res_high                       2.50 
_refine_hist.d_res_low                        8.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d                0.005 ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg             1.00  ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_na   8.0   ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_na   1.00  ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   8 
_refine_ls_shell.d_res_high                       2.50 
_refine_ls_shell.d_res_low                        2.61 
_refine_ls_shell.number_reflns_R_work             311 
_refine_ls_shell.R_factor_R_work                  ? 
_refine_ls_shell.percent_reflns_obs               60.30 
_refine_ls_shell.R_factor_R_free                  ? 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            10.00 
_refine_ls_shell.number_reflns_R_free             39 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
_database_PDB_matrix.entry_id          409D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  409D 
_struct.title                     
'CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOBBLES' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        409D 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'DOUBLE HELIX, I.U WOBBLES, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 1 ? 
D N N 1 ? 
E N N 1 ? 
F N N 1 ? 
G N N 2 ? 
H N N 2 ? 
I N N 2 ? 
J N N 2 ? 
K N N 2 ? 
L N N 2 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    409D 
_struct_ref.pdbx_db_accession          409D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 409D A 1 ? 8 ? 409D 1  ? 8  ? 1  8  
2 1 409D B 1 ? 8 ? 409D 9  ? 16 ? 9  16 
3 1 409D C 1 ? 8 ? 409D 17 ? 24 ? 17 24 
4 1 409D D 1 ? 8 ? 409D 25 ? 32 ? 25 32 
5 1 409D E 1 ? 8 ? 409D 33 ? 40 ? 33 40 
6 1 409D F 1 ? 8 ? 409D 41 ? 48 ? 41 48 
# 
loop_
_pdbx_struct_assembly.id 
_pdbx_struct_assembly.details 
_pdbx_struct_assembly.method_details 
_pdbx_struct_assembly.oligomeric_details 
_pdbx_struct_assembly.oligomeric_count 
1 author_defined_assembly ? dimeric 2 
2 author_defined_assembly ? dimeric 2 
3 author_defined_assembly ? dimeric 2 
# 
loop_
_pdbx_struct_assembly_gen.assembly_id 
_pdbx_struct_assembly_gen.oper_expression 
_pdbx_struct_assembly_gen.asym_id_list 
1 1 A,B,G,H 
2 1 C,D,I,J 
3 1 E,F,K,L 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_biol.id 
1 
2 
3 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 1  B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 1  B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 1  B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2  B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2  B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2  B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 3  B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 3  B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 3  B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A I 4 N1 ? ? ? 1_555 B U 5 O2 ? ? A I 4  B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog11 hydrog ? ? A I 4 O6 ? ? ? 1_555 B U 5 N3 ? ? A I 4  B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B I 4 O6 ? ? A U 5  B I 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 B I 4 N1 ? ? A U 5  B I 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 6  B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 6  B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 6  B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 7  B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 7  B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 7  B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 8  B C 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 8  B C 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 8  B C 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? C C 1 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 17 D G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? C C 1 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 17 D G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? C C 1 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 17 D G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 18 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 18 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 18 D G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 6 N1 ? ? C C 19 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 6 O6 ? ? C C 19 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog31 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 19 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog32 hydrog ? ? C I 4 N1 ? ? ? 1_555 D U 5 O2 ? ? C I 20 D U 29 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog33 hydrog ? ? C I 4 O6 ? ? ? 1_555 D U 5 N3 ? ? C I 20 D U 29 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog34 hydrog ? ? C U 5 N3 ? ? ? 1_555 D I 4 O6 ? ? C U 21 D I 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog35 hydrog ? ? C U 5 O2 ? ? ? 1_555 D I 4 N1 ? ? C U 21 D I 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog36 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog37 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog38 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 22 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog39 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 23 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog40 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 23 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog41 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 23 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog42 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 24 D C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog43 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 24 D C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog44 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 24 D C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog45 hydrog ? ? E C 1 N3 ? ? ? 1_555 F G 8 N1 ? ? E C 33 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog46 hydrog ? ? E C 1 N4 ? ? ? 1_555 F G 8 O6 ? ? E C 33 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog47 hydrog ? ? E C 1 O2 ? ? ? 1_555 F G 8 N2 ? ? E C 33 F G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog48 hydrog ? ? E C 2 N3 ? ? ? 1_555 F G 7 N1 ? ? E C 34 F G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog49 hydrog ? ? E C 2 N4 ? ? ? 1_555 F G 7 O6 ? ? E C 34 F G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog50 hydrog ? ? E C 2 O2 ? ? ? 1_555 F G 7 N2 ? ? E C 34 F G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog51 hydrog ? ? E C 3 N3 ? ? ? 1_555 F G 6 N1 ? ? E C 35 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog52 hydrog ? ? E C 3 N4 ? ? ? 1_555 F G 6 O6 ? ? E C 35 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog53 hydrog ? ? E C 3 O2 ? ? ? 1_555 F G 6 N2 ? ? E C 35 F G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog54 hydrog ? ? E I 4 N1 ? ? ? 1_555 F U 5 O2 ? ? E I 36 F U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog55 hydrog ? ? E I 4 O6 ? ? ? 1_555 F U 5 N3 ? ? E I 36 F U 45 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog56 hydrog ? ? E U 5 N3 ? ? ? 1_555 F I 4 O6 ? ? E U 37 F I 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog57 hydrog ? ? E U 5 O2 ? ? ? 1_555 F I 4 N1 ? ? E U 37 F I 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? 
hydrog58 hydrog ? ? E G 6 N1 ? ? ? 1_555 F C 3 N3 ? ? E G 38 F C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog59 hydrog ? ? E G 6 N2 ? ? ? 1_555 F C 3 O2 ? ? E G 38 F C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog60 hydrog ? ? E G 6 O6 ? ? ? 1_555 F C 3 N4 ? ? E G 38 F C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog61 hydrog ? ? E G 7 N1 ? ? ? 1_555 F C 2 N3 ? ? E G 39 F C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog62 hydrog ? ? E G 7 N2 ? ? ? 1_555 F C 2 O2 ? ? E G 39 F C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog63 hydrog ? ? E G 7 O6 ? ? ? 1_555 F C 2 N4 ? ? E G 39 F C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog64 hydrog ? ? E G 8 N1 ? ? ? 1_555 F C 1 N3 ? ? E G 40 F C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog65 hydrog ? ? E G 8 N2 ? ? ? 1_555 F C 1 O2 ? ? E G 40 F C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog66 hydrog ? ? E G 8 O6 ? ? ? 1_555 F C 1 N4 ? ? E G 40 F C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 N1    A C 1  ? ? C2    A C 1  ? ? 1.292 1.397 -0.105 0.010 N 
2  1 N1    A C 1  ? ? C6    A C 1  ? ? 1.416 1.367 0.049  0.006 N 
3  1 N1    A C 3  ? ? C6    A C 3  ? ? 1.319 1.367 -0.048 0.006 N 
4  1 N9    B G 15 ? ? C4    B G 15 ? ? 1.317 1.375 -0.058 0.008 N 
5  1 N1    C C 18 ? ? C2    C C 18 ? ? 1.315 1.397 -0.082 0.010 N 
6  1 N1    C U 21 ? ? C2    C U 21 ? ? 1.440 1.381 0.059  0.009 N 
7  1 N1    C U 21 ? ? C6    C U 21 ? ? 1.302 1.375 -0.073 0.009 N 
8  1 N9    C G 24 ? ? C4    C G 24 ? ? 1.325 1.375 -0.050 0.008 N 
9  1 N9    D G 30 ? ? C4    D G 30 ? ? 1.312 1.375 -0.063 0.008 N 
10 1 N1    E C 33 ? ? C2    E C 33 ? ? 1.478 1.397 0.081  0.010 N 
11 1 N1    E C 33 ? ? C6    E C 33 ? ? 1.300 1.367 -0.067 0.006 N 
12 1 N1    E C 34 ? ? C2    E C 34 ? ? 1.316 1.397 -0.081 0.010 N 
13 1 "O4'" F C 43 ? ? "C1'" F C 43 ? ? 1.315 1.412 -0.097 0.013 N 
14 1 N1    F C 43 ? ? C2    F C 43 ? ? 1.258 1.397 -0.139 0.010 N 
15 1 N1    F C 43 ? ? C6    F C 43 ? ? 1.437 1.367 0.070  0.006 N 
16 1 N1    F U 45 ? ? C6    F U 45 ? ? 1.313 1.375 -0.062 0.009 N 
17 1 N9    F G 47 ? ? C4    F G 47 ? ? 1.326 1.375 -0.049 0.008 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 C2    A C 1  ? ? N1    A C 1  ? ? "C1'" A C 1  ? ? 111.22 118.80 -7.58 1.10 N 
2  1 C2    B U 13 ? ? N1    B U 13 ? ? "C1'" B U 13 ? ? 125.40 117.70 7.70  1.20 N 
3  1 C5    E C 33 ? ? C6    E C 33 ? ? N1    E C 33 ? ? 124.05 121.00 3.05  0.50 N 
4  1 C6    E C 33 ? ? N1    E C 33 ? ? "C1'" E C 33 ? ? 112.56 120.80 -8.24 1.20 N 
5  1 C2    E C 33 ? ? N1    E C 33 ? ? "C1'" E C 33 ? ? 127.93 118.80 9.13  1.10 N 
6  1 "C3'" F C 43 ? ? "C2'" F C 43 ? ? "C1'" F C 43 ? ? 96.77  101.30 -4.53 0.70 N 
7  1 "O4'" F C 43 ? ? "C1'" F C 43 ? ? N1    F C 43 ? ? 102.49 108.20 -5.71 0.80 N 
8  1 C5    F C 43 ? ? C6    F C 43 ? ? N1    F C 43 ? ? 117.17 121.00 -3.83 0.50 N 
9  1 N1    F C 43 ? ? C2    F C 43 ? ? O2    F C 43 ? ? 114.34 118.90 -4.56 0.60 N 
10 1 C6    F C 43 ? ? N1    F C 43 ? ? "C1'" F C 43 ? ? 128.88 120.80 8.08  1.20 N 
11 1 C2    F C 43 ? ? N1    F C 43 ? ? "C1'" F C 43 ? ? 108.81 118.80 -9.99 1.10 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 C A 1  ? ? 0.075 'SIDE CHAIN' 
2 1 C C 17 ? ? 0.109 'SIDE CHAIN' 
3 1 C C 19 ? ? 0.079 'SIDE CHAIN' 
4 1 C D 26 ? ? 0.106 'SIDE CHAIN' 
5 1 C F 42 ? ? 0.087 'SIDE CHAIN' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
C   OP3    O N N 1   
C   P      P N N 2   
C   OP1    O N N 3   
C   OP2    O N N 4   
C   "O5'"  O N N 5   
C   "C5'"  C N N 6   
C   "C4'"  C N R 7   
C   "O4'"  O N N 8   
C   "C3'"  C N S 9   
C   "O3'"  O N N 10  
C   "C2'"  C N R 11  
C   "O2'"  O N N 12  
C   "C1'"  C N R 13  
C   N1     N N N 14  
C   C2     C N N 15  
C   O2     O N N 16  
C   N3     N N N 17  
C   C4     C N N 18  
C   N4     N N N 19  
C   C5     C N N 20  
C   C6     C N N 21  
C   HOP3   H N N 22  
C   HOP2   H N N 23  
C   "H5'"  H N N 24  
C   "H5''" H N N 25  
C   "H4'"  H N N 26  
C   "H3'"  H N N 27  
C   "HO3'" H N N 28  
C   "H2'"  H N N 29  
C   "HO2'" H N N 30  
C   "H1'"  H N N 31  
C   H41    H N N 32  
C   H42    H N N 33  
C   H5     H N N 34  
C   H6     H N N 35  
G   OP3    O N N 36  
G   P      P N N 37  
G   OP1    O N N 38  
G   OP2    O N N 39  
G   "O5'"  O N N 40  
G   "C5'"  C N N 41  
G   "C4'"  C N R 42  
G   "O4'"  O N N 43  
G   "C3'"  C N S 44  
G   "O3'"  O N N 45  
G   "C2'"  C N R 46  
G   "O2'"  O N N 47  
G   "C1'"  C N R 48  
G   N9     N Y N 49  
G   C8     C Y N 50  
G   N7     N Y N 51  
G   C5     C Y N 52  
G   C6     C N N 53  
G   O6     O N N 54  
G   N1     N N N 55  
G   C2     C N N 56  
G   N2     N N N 57  
G   N3     N N N 58  
G   C4     C Y N 59  
G   HOP3   H N N 60  
G   HOP2   H N N 61  
G   "H5'"  H N N 62  
G   "H5''" H N N 63  
G   "H4'"  H N N 64  
G   "H3'"  H N N 65  
G   "HO3'" H N N 66  
G   "H2'"  H N N 67  
G   "HO2'" H N N 68  
G   "H1'"  H N N 69  
G   H8     H N N 70  
G   H1     H N N 71  
G   H21    H N N 72  
G   H22    H N N 73  
HOH O      O N N 74  
HOH H1     H N N 75  
HOH H2     H N N 76  
I   OP3    O N N 77  
I   P      P N N 78  
I   OP1    O N N 79  
I   OP2    O N N 80  
I   "O5'"  O N N 81  
I   "C5'"  C N N 82  
I   "C4'"  C N R 83  
I   "O4'"  O N N 84  
I   "C3'"  C N S 85  
I   "O3'"  O N N 86  
I   "C2'"  C N R 87  
I   "O2'"  O N N 88  
I   "C1'"  C N R 89  
I   N9     N Y N 90  
I   C8     C Y N 91  
I   N7     N Y N 92  
I   C5     C Y N 93  
I   C6     C N N 94  
I   O6     O N N 95  
I   N1     N N N 96  
I   C2     C N N 97  
I   N3     N N N 98  
I   C4     C Y N 99  
I   HOP3   H N N 100 
I   HOP2   H N N 101 
I   "H5'"  H N N 102 
I   "H5''" H N N 103 
I   "H4'"  H N N 104 
I   "H3'"  H N N 105 
I   "HO3'" H N N 106 
I   "H2'"  H N N 107 
I   "HO2'" H N N 108 
I   "H1'"  H N N 109 
I   H8     H N N 110 
I   H1     H N N 111 
I   H2     H N N 112 
U   OP3    O N N 113 
U   P      P N N 114 
U   OP1    O N N 115 
U   OP2    O N N 116 
U   "O5'"  O N N 117 
U   "C5'"  C N N 118 
U   "C4'"  C N R 119 
U   "O4'"  O N N 120 
U   "C3'"  C N S 121 
U   "O3'"  O N N 122 
U   "C2'"  C N R 123 
U   "O2'"  O N N 124 
U   "C1'"  C N R 125 
U   N1     N N N 126 
U   C2     C N N 127 
U   O2     O N N 128 
U   N3     N N N 129 
U   C4     C N N 130 
U   O4     O N N 131 
U   C5     C N N 132 
U   C6     C N N 133 
U   HOP3   H N N 134 
U   HOP2   H N N 135 
U   "H5'"  H N N 136 
U   "H5''" H N N 137 
U   "H4'"  H N N 138 
U   "H3'"  H N N 139 
U   "HO3'" H N N 140 
U   "H2'"  H N N 141 
U   "HO2'" H N N 142 
U   "H1'"  H N N 143 
U   H3     H N N 144 
U   H5     H N N 145 
U   H6     H N N 146 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C   OP3   P      sing N N 1   
C   OP3   HOP3   sing N N 2   
C   P     OP1    doub N N 3   
C   P     OP2    sing N N 4   
C   P     "O5'"  sing N N 5   
C   OP2   HOP2   sing N N 6   
C   "O5'" "C5'"  sing N N 7   
C   "C5'" "C4'"  sing N N 8   
C   "C5'" "H5'"  sing N N 9   
C   "C5'" "H5''" sing N N 10  
C   "C4'" "O4'"  sing N N 11  
C   "C4'" "C3'"  sing N N 12  
C   "C4'" "H4'"  sing N N 13  
C   "O4'" "C1'"  sing N N 14  
C   "C3'" "O3'"  sing N N 15  
C   "C3'" "C2'"  sing N N 16  
C   "C3'" "H3'"  sing N N 17  
C   "O3'" "HO3'" sing N N 18  
C   "C2'" "O2'"  sing N N 19  
C   "C2'" "C1'"  sing N N 20  
C   "C2'" "H2'"  sing N N 21  
C   "O2'" "HO2'" sing N N 22  
C   "C1'" N1     sing N N 23  
C   "C1'" "H1'"  sing N N 24  
C   N1    C2     sing N N 25  
C   N1    C6     sing N N 26  
C   C2    O2     doub N N 27  
C   C2    N3     sing N N 28  
C   N3    C4     doub N N 29  
C   C4    N4     sing N N 30  
C   C4    C5     sing N N 31  
C   N4    H41    sing N N 32  
C   N4    H42    sing N N 33  
C   C5    C6     doub N N 34  
C   C5    H5     sing N N 35  
C   C6    H6     sing N N 36  
G   OP3   P      sing N N 37  
G   OP3   HOP3   sing N N 38  
G   P     OP1    doub N N 39  
G   P     OP2    sing N N 40  
G   P     "O5'"  sing N N 41  
G   OP2   HOP2   sing N N 42  
G   "O5'" "C5'"  sing N N 43  
G   "C5'" "C4'"  sing N N 44  
G   "C5'" "H5'"  sing N N 45  
G   "C5'" "H5''" sing N N 46  
G   "C4'" "O4'"  sing N N 47  
G   "C4'" "C3'"  sing N N 48  
G   "C4'" "H4'"  sing N N 49  
G   "O4'" "C1'"  sing N N 50  
G   "C3'" "O3'"  sing N N 51  
G   "C3'" "C2'"  sing N N 52  
G   "C3'" "H3'"  sing N N 53  
G   "O3'" "HO3'" sing N N 54  
G   "C2'" "O2'"  sing N N 55  
G   "C2'" "C1'"  sing N N 56  
G   "C2'" "H2'"  sing N N 57  
G   "O2'" "HO2'" sing N N 58  
G   "C1'" N9     sing N N 59  
G   "C1'" "H1'"  sing N N 60  
G   N9    C8     sing Y N 61  
G   N9    C4     sing Y N 62  
G   C8    N7     doub Y N 63  
G   C8    H8     sing N N 64  
G   N7    C5     sing Y N 65  
G   C5    C6     sing N N 66  
G   C5    C4     doub Y N 67  
G   C6    O6     doub N N 68  
G   C6    N1     sing N N 69  
G   N1    C2     sing N N 70  
G   N1    H1     sing N N 71  
G   C2    N2     sing N N 72  
G   C2    N3     doub N N 73  
G   N2    H21    sing N N 74  
G   N2    H22    sing N N 75  
G   N3    C4     sing N N 76  
HOH O     H1     sing N N 77  
HOH O     H2     sing N N 78  
I   OP3   P      sing N N 79  
I   OP3   HOP3   sing N N 80  
I   P     OP1    doub N N 81  
I   P     OP2    sing N N 82  
I   P     "O5'"  sing N N 83  
I   OP2   HOP2   sing N N 84  
I   "O5'" "C5'"  sing N N 85  
I   "C5'" "C4'"  sing N N 86  
I   "C5'" "H5'"  sing N N 87  
I   "C5'" "H5''" sing N N 88  
I   "C4'" "O4'"  sing N N 89  
I   "C4'" "C3'"  sing N N 90  
I   "C4'" "H4'"  sing N N 91  
I   "O4'" "C1'"  sing N N 92  
I   "C3'" "O3'"  sing N N 93  
I   "C3'" "C2'"  sing N N 94  
I   "C3'" "H3'"  sing N N 95  
I   "O3'" "HO3'" sing N N 96  
I   "C2'" "O2'"  sing N N 97  
I   "C2'" "C1'"  sing N N 98  
I   "C2'" "H2'"  sing N N 99  
I   "O2'" "HO2'" sing N N 100 
I   "C1'" N9     sing N N 101 
I   "C1'" "H1'"  sing N N 102 
I   N9    C8     sing Y N 103 
I   N9    C4     sing Y N 104 
I   C8    N7     doub Y N 105 
I   C8    H8     sing N N 106 
I   N7    C5     sing Y N 107 
I   C5    C6     sing N N 108 
I   C5    C4     doub Y N 109 
I   C6    O6     doub N N 110 
I   C6    N1     sing N N 111 
I   N1    C2     sing N N 112 
I   N1    H1     sing N N 113 
I   C2    N3     doub N N 114 
I   C2    H2     sing N N 115 
I   N3    C4     sing N N 116 
U   OP3   P      sing N N 117 
U   OP3   HOP3   sing N N 118 
U   P     OP1    doub N N 119 
U   P     OP2    sing N N 120 
U   P     "O5'"  sing N N 121 
U   OP2   HOP2   sing N N 122 
U   "O5'" "C5'"  sing N N 123 
U   "C5'" "C4'"  sing N N 124 
U   "C5'" "H5'"  sing N N 125 
U   "C5'" "H5''" sing N N 126 
U   "C4'" "O4'"  sing N N 127 
U   "C4'" "C3'"  sing N N 128 
U   "C4'" "H4'"  sing N N 129 
U   "O4'" "C1'"  sing N N 130 
U   "C3'" "O3'"  sing N N 131 
U   "C3'" "C2'"  sing N N 132 
U   "C3'" "H3'"  sing N N 133 
U   "O3'" "HO3'" sing N N 134 
U   "C2'" "O2'"  sing N N 135 
U   "C2'" "C1'"  sing N N 136 
U   "C2'" "H2'"  sing N N 137 
U   "O2'" "HO2'" sing N N 138 
U   "C1'" N1     sing N N 139 
U   "C1'" "H1'"  sing N N 140 
U   N1    C2     sing N N 141 
U   N1    C6     sing N N 142 
U   C2    O2     doub N N 143 
U   C2    N3     sing N N 144 
U   N3    C4     sing N N 145 
U   N3    H3     sing N N 146 
U   C4    O4     doub N N 147 
U   C4    C5     sing N N 148 
U   C5    C6     doub N N 149 
U   C5    H5     sing N N 150 
U   C6    H6     sing N N 151 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
409D 'double helix'         
409D 'a-form double helix'  
409D 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A C 1 1_555 B G 8 1_555 0.166  -0.152 -0.136 5.062   -5.861  0.836  1  A_C1:G16_B  A 1  ? B 16 ? 19 1 
1 A C 2 1_555 B G 7 1_555 0.225  -0.205 -0.016 1.056   -2.950  -0.876 2  A_C2:G15_B  A 2  ? B 15 ? 19 1 
1 A C 3 1_555 B G 6 1_555 0.598  -0.308 -0.381 -0.451  -2.077  -2.252 3  A_C3:G14_B  A 3  ? B 14 ? 19 1 
1 A I 4 1_555 B U 5 1_555 -1.834 -0.472 -0.329 -10.821 -7.327  -0.066 4  A_I4:U13_B  A 4  ? B 13 ? 28 ? 
1 A U 5 1_555 B I 4 1_555 1.616  -0.540 0.059  -0.393  -2.470  -4.618 5  A_U5:I12_B  A 5  ? B 12 ? 28 ? 
1 A G 6 1_555 B C 3 1_555 -0.345 -0.276 -0.092 -0.668  -7.833  -0.136 6  A_G6:C11_B  A 6  ? B 11 ? 19 1 
1 A G 7 1_555 B C 2 1_555 -0.499 -0.353 -0.522 -6.732  -10.192 0.400  7  A_G7:C10_B  A 7  ? B 10 ? 19 1 
1 A G 8 1_555 B C 1 1_555 0.361  -0.090 -0.084 1.331   -1.679  0.017  8  A_G8:C9_B   A 8  ? B 9  ? 19 1 
1 C C 1 1_555 D G 8 1_555 -0.523 -0.080 -0.153 1.891   -3.213  -1.160 9  C_C17:G32_D C 17 ? D 32 ? 19 1 
1 C C 2 1_555 D G 7 1_555 0.304  -0.275 -0.127 3.611   -3.085  -2.328 10 C_C18:G31_D C 18 ? D 31 ? 19 1 
1 C C 3 1_555 D G 6 1_555 0.734  -0.349 -0.027 -1.463  -3.449  -2.041 11 C_C19:G30_D C 19 ? D 30 ? 19 1 
1 C I 4 1_555 D U 5 1_555 -2.028 -0.527 0.081  -2.742  -5.200  0.126  12 C_I20:U29_D C 20 ? D 29 ? 28 ? 
1 C U 5 1_555 D I 4 1_555 2.365  -0.508 -0.055 -1.568  -4.680  -1.145 13 C_U21:I28_D C 21 ? D 28 ? 28 ? 
1 C G 6 1_555 D C 3 1_555 0.099  -0.153 -0.016 -2.211  -0.104  -1.685 14 C_G22:C27_D C 22 ? D 27 ? 19 1 
1 C G 7 1_555 D C 2 1_555 -0.091 -0.078 -0.090 -1.465  -4.988  -1.047 15 C_G23:C26_D C 23 ? D 26 ? 19 1 
1 C G 8 1_555 D C 1 1_555 0.677  -0.115 0.069  -4.004  -2.079  -0.305 16 C_G24:C25_D C 24 ? D 25 ? 19 1 
1 E C 1 1_555 F G 8 1_555 -0.063 -0.126 -0.006 4.029   -2.949  -4.632 17 E_C33:G48_F E 33 ? F 48 ? 19 1 
1 E C 2 1_555 F G 7 1_555 -0.049 -0.187 0.125  2.099   -3.910  1.386  18 E_C34:G47_F E 34 ? F 47 ? 19 1 
1 E C 3 1_555 F G 6 1_555 -0.464 -0.093 -0.262 -0.583  -1.447  -2.571 19 E_C35:G46_F E 35 ? F 46 ? 19 1 
1 E I 4 1_555 F U 5 1_555 -2.014 -0.568 0.049  -5.336  -0.732  -2.924 20 E_I36:U45_F E 36 ? F 45 ? 28 ? 
1 E U 5 1_555 F I 4 1_555 1.653  -0.429 -0.095 3.285   -1.978  1.070  21 E_U37:I44_F E 37 ? F 44 ? 28 ? 
1 E G 6 1_555 F C 3 1_555 -0.022 -0.227 -0.227 -0.414  -1.082  0.333  22 E_G38:C43_F E 38 ? F 43 ? 19 1 
1 E G 7 1_555 F C 2 1_555 0.097  -0.190 0.525  2.849   -4.164  -1.234 23 E_G39:C42_F E 39 ? F 42 ? 19 1 
1 E G 8 1_555 F C 1 1_555 -0.813 -0.334 -0.038 -3.092  -9.795  1.343  24 E_G40:C41_F E 40 ? F 41 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A C 1 1_555 B G 8 1_555 A C 2 1_555 B G 7 1_555 -0.750 -1.582 3.235 -7.221 5.595  35.785 -3.239  0.231  3.051 8.927  11.521  
36.895 1  AA_C1C2:G15G16_BB   A 1  ? B 16 ? A 2  ? B 15 ? 
1 A C 2 1_555 B G 7 1_555 A C 3 1_555 B G 6 1_555 -0.740 -2.069 3.358 1.580  9.400  30.221 -5.406  1.628  2.573 17.490 -2.940  
31.656 2  AA_C2C3:G14G15_BB   A 2  ? B 15 ? A 3  ? B 14 ? 
1 A C 3 1_555 B G 6 1_555 A I 4 1_555 B U 5 1_555 0.084  -2.037 3.677 -3.539 7.223  15.991 -10.725 -2.317 2.456 24.079 11.798  
17.888 3  AA_C3I4:U13G14_BB   A 3  ? B 14 ? A 4  ? B 13 ? 
1 A I 4 1_555 B U 5 1_555 A U 5 1_555 B I 4 1_555 -0.060 -1.124 3.176 -3.005 8.291  49.741 -1.876  -0.131 2.963 9.768  3.541   
50.468 4  AA_I4U5:I12U13_BB   A 4  ? B 13 ? A 5  ? B 12 ? 
1 A U 5 1_555 B I 4 1_555 A G 6 1_555 B C 3 1_555 0.565  -1.740 3.051 1.328  13.116 27.670 -5.432  -0.854 2.058 25.660 -2.598  
30.595 5  AA_U5G6:C11I12_BB   A 5  ? B 12 ? A 6  ? B 11 ? 
1 A G 6 1_555 B C 3 1_555 A G 7 1_555 B C 2 1_555 0.023  -1.732 3.710 3.732  4.080  28.862 -4.379  0.835  3.414 8.091  -7.401  
29.376 6  AA_G6G7:C10C11_BB   A 6  ? B 11 ? A 7  ? B 10 ? 
1 A G 7 1_555 B C 2 1_555 A G 8 1_555 B C 1 1_555 0.346  -1.515 3.185 1.710  4.488  37.604 -2.879  -0.325 3.003 6.928  -2.639  
37.898 7  AA_G7G8:C9C10_BB    A 7  ? B 10 ? A 8  ? B 9  ? 
1 C C 1 1_555 D G 8 1_555 C C 2 1_555 D G 7 1_555 -0.462 -1.639 3.263 -6.052 1.910  33.018 -3.146  -0.188 3.198 3.323  10.527  
33.606 8  CC_C17C18:G31G32_DD C 17 ? D 32 ? C 18 ? D 31 ? 
1 C C 2 1_555 D G 7 1_555 C C 3 1_555 D G 6 1_555 -0.172 -1.776 3.528 -0.165 7.846  38.705 -3.581  0.235  3.124 11.692 0.246   
39.462 9  CC_C18C19:G30G31_DD C 18 ? D 31 ? C 19 ? D 30 ? 
1 C C 3 1_555 D G 6 1_555 C I 4 1_555 D U 5 1_555 1.090  -2.601 3.197 1.916  12.031 16.129 -11.470 -2.464 1.122 36.798 -5.860  
20.188 10 CC_C19I20:U29G30_DD C 19 ? D 30 ? C 20 ? D 29 ? 
1 C I 4 1_555 D U 5 1_555 C U 5 1_555 D I 4 1_555 0.067  -1.553 3.349 0.942  4.595  49.436 -2.189  -0.010 3.203 5.480  -1.123  
49.644 11 CC_I20U21:I28U29_DD C 20 ? D 29 ? C 21 ? D 28 ? 
1 C U 5 1_555 D I 4 1_555 C G 6 1_555 D C 3 1_555 -1.044 -1.617 3.417 -3.418 6.132  18.168 -7.785  1.414  2.868 18.545 10.336  
19.467 12 CC_U21G22:C27I28_DD C 21 ? D 28 ? C 22 ? D 27 ? 
1 C G 6 1_555 D C 3 1_555 C G 7 1_555 D C 2 1_555 0.441  -1.774 3.306 5.063  4.350  29.997 -4.190  0.146  3.056 8.275  -9.632  
30.714 13 CC_G22G23:C26C27_DD C 22 ? D 27 ? C 23 ? D 26 ? 
1 C G 7 1_555 D C 2 1_555 C G 8 1_555 D C 1 1_555 1.167  -2.177 3.304 3.268  7.610  37.401 -4.239  -1.386 2.910 11.692 -5.021  
38.275 14 CC_G23G24:C25C26_DD C 23 ? D 26 ? C 24 ? D 25 ? 
1 E C 1 1_555 F G 8 1_555 E C 2 1_555 F G 7 1_555 -0.422 -1.954 3.175 -6.205 7.379  32.813 -4.400  -0.185 2.717 12.723 10.699  
34.163 15 EE_C33C34:G47G48_FF E 33 ? F 48 ? E 34 ? F 47 ? 
1 E C 2 1_555 F G 7 1_555 E C 3 1_555 F G 6 1_555 -0.781 -1.812 3.212 -0.006 8.464  33.241 -4.293  1.324  2.684 14.504 0.011   
34.273 16 EE_C34C35:G46G47_FF E 34 ? F 47 ? E 35 ? F 46 ? 
1 E C 3 1_555 F G 6 1_555 E I 4 1_555 F U 5 1_555 1.388  -2.551 3.752 0.832  -0.330 13.904 -10.144 -4.783 3.887 -1.361 -3.434  
13.932 17 EE_C35I36:U45G46_FF E 35 ? F 46 ? E 36 ? F 45 ? 
1 E I 4 1_555 F U 5 1_555 E U 5 1_555 F I 4 1_555 0.511  -1.656 2.917 1.336  8.515  46.705 -2.644  -0.543 2.607 10.634 -1.668  
47.450 18 EE_I36U37:I44U45_FF E 36 ? F 45 ? E 37 ? F 44 ? 
1 E U 5 1_555 F I 4 1_555 E G 6 1_555 F C 3 1_555 -1.251 -1.442 3.650 -0.880 1.482  30.353 -3.081  2.189  3.611 2.828  1.679   
30.401 19 EE_U37G38:C43I44_FF E 37 ? F 44 ? E 38 ? F 43 ? 
1 E G 6 1_555 F C 3 1_555 E G 7 1_555 F C 2 1_555 0.779  -1.886 2.859 -0.606 12.104 31.884 -4.707  -1.405 2.015 21.104 1.057   
34.054 20 EE_G38G39:C42C43_FF E 38 ? F 43 ? E 39 ? F 42 ? 
1 E G 7 1_555 F C 2 1_555 E G 8 1_555 F C 1 1_555 0.317  -1.904 3.357 7.362  10.999 28.162 -5.531  0.732  2.464 21.186 -14.182 
31.060 21 EE_G39G40:C41C42_FF E 39 ? F 42 ? E 40 ? F 41 ? 
# 
_pdbx_initial_refinement_model.accession_code   1RXA 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.details          'R(CCCCGGGG)' 
# 
_atom_sites.entry_id                    409D 
_atom_sites.fract_transf_matrix[1][1]   0.029904 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.007845 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.023036 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.020932 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_