data_423D # _entry.id 423D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 423D pdb_0000423d 10.2210/pdb423d/pdb RCSB BD0001 ? ? WWPDB D_1000179221 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-10-14 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-28 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.value' 13 4 'Structure model' '_struct_conn.pdbx_dist_value' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 27 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 423D _pdbx_database_status.recvd_initial_deposition_date 1998-09-14 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rozenberg, H.' 1 'Rabinovich, D.' 2 'Frolow, F.' 3 'Hegde, R.S.' 4 'Shakked, Z.' 5 # _citation.id primary _citation.title 'Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 95 _citation.page_first 15194 _citation.page_last 15199 _citation.year 1998 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9860945 _citation.pdbx_database_id_DOI 10.1073/pnas.95.26.15194 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rozenberg, H.' 1 ? primary 'Rabinovich, D.' 2 ? primary 'Frolow, F.' 3 ? primary 'Hegde, R.S.' 4 ? primary 'Shakked, Z.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 water nat water 18.015 157 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DC)(DG)(DA)(DC)(DG)(DT)(DC)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACCGACGTCGGT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DG n 1 12 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DT 12 12 12 DT T A . n B 1 1 DA 1 13 13 DA A B . n B 1 2 DC 2 14 14 DC C B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DC 6 18 18 DC C B . n B 1 7 DG 7 19 19 DG G B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DT 12 24 24 DT T B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO6 A . D 2 MG 1 29 29 MG MO6 A . E 2 MG 1 25 25 MG MO6 B . F 2 MG 1 27 27 MG MO6 B . G 2 MG 1 28 28 MG MO6 B . H 3 HOH 1 31 31 HOH HOH A . H 3 HOH 2 36 36 HOH HOH A . H 3 HOH 3 37 37 HOH HOH A . H 3 HOH 4 39 39 HOH HOH A . H 3 HOH 5 43 43 HOH HOH A . H 3 HOH 6 46 46 HOH HOH A . H 3 HOH 7 50 50 HOH HOH A . H 3 HOH 8 51 51 HOH HOH A . H 3 HOH 9 52 52 HOH HOH A . H 3 HOH 10 53 53 HOH HOH A . H 3 HOH 11 54 54 HOH HOH A . H 3 HOH 12 55 55 HOH HOH A . H 3 HOH 13 59 59 HOH HOH A . H 3 HOH 14 60 60 HOH HOH A . H 3 HOH 15 61 61 HOH HOH A . H 3 HOH 16 63 63 HOH HOH A . H 3 HOH 17 64 64 HOH HOH A . H 3 HOH 18 68 68 HOH HOH A . H 3 HOH 19 70 70 HOH HOH A . H 3 HOH 20 71 71 HOH HOH A . H 3 HOH 21 72 72 HOH HOH A . H 3 HOH 22 74 74 HOH HOH A . H 3 HOH 23 75 75 HOH HOH A . H 3 HOH 24 77 77 HOH HOH A . H 3 HOH 25 78 78 HOH HOH A . H 3 HOH 26 79 79 HOH HOH A . H 3 HOH 27 80 80 HOH HOH A . H 3 HOH 28 81 81 HOH HOH A . H 3 HOH 29 82 82 HOH HOH A . H 3 HOH 30 83 83 HOH HOH A . H 3 HOH 31 84 84 HOH HOH A . H 3 HOH 32 85 85 HOH HOH A . H 3 HOH 33 87 87 HOH HOH A . H 3 HOH 34 89 89 HOH HOH A . H 3 HOH 35 90 90 HOH HOH A . H 3 HOH 36 91 91 HOH HOH A . H 3 HOH 37 95 95 HOH HOH A . H 3 HOH 38 97 97 HOH HOH A . H 3 HOH 39 98 98 HOH HOH A . H 3 HOH 40 99 99 HOH HOH A . H 3 HOH 41 101 101 HOH HOH A . H 3 HOH 42 102 102 HOH HOH A . H 3 HOH 43 103 103 HOH HOH A . H 3 HOH 44 105 105 HOH HOH A . H 3 HOH 45 106 106 HOH HOH A . H 3 HOH 46 108 108 HOH HOH A . H 3 HOH 47 110 110 HOH HOH A . H 3 HOH 48 114 114 HOH HOH A . H 3 HOH 49 118 118 HOH HOH A . H 3 HOH 50 121 121 HOH HOH A . H 3 HOH 51 122 122 HOH HOH A . H 3 HOH 52 123 123 HOH HOH A . H 3 HOH 53 124 124 HOH HOH A . H 3 HOH 54 125 125 HOH HOH A . H 3 HOH 55 127 127 HOH HOH A . H 3 HOH 56 129 129 HOH HOH A . H 3 HOH 57 132 132 HOH HOH A . H 3 HOH 58 133 133 HOH HOH A . H 3 HOH 59 136 136 HOH HOH A . H 3 HOH 60 137 137 HOH HOH A . H 3 HOH 61 139 139 HOH HOH A . H 3 HOH 62 140 140 HOH HOH A . H 3 HOH 63 142 142 HOH HOH A . H 3 HOH 64 143 143 HOH HOH A . H 3 HOH 65 144 144 HOH HOH A . H 3 HOH 66 145 145 HOH HOH A . H 3 HOH 67 150 150 HOH HOH A . H 3 HOH 68 151 151 HOH HOH A . H 3 HOH 69 154 154 HOH HOH A . H 3 HOH 70 155 155 HOH HOH A . H 3 HOH 71 156 156 HOH HOH A . H 3 HOH 72 160 25 HOH MO6 A . H 3 HOH 73 161 25 HOH MO6 A . H 3 HOH 74 165 26 HOH MO6 A . H 3 HOH 75 166 26 HOH MO6 A . H 3 HOH 76 168 26 HOH MO6 A . H 3 HOH 77 170 27 HOH MO6 A . H 3 HOH 78 171 27 HOH MO6 A . H 3 HOH 79 172 27 HOH MO6 A . H 3 HOH 80 178 28 HOH MO6 A . H 3 HOH 81 180 28 HOH MO6 A . H 3 HOH 82 181 29 HOH MO6 A . H 3 HOH 83 182 29 HOH MO6 A . H 3 HOH 84 183 29 HOH MO6 A . H 3 HOH 85 184 29 HOH MO6 A . H 3 HOH 86 185 29 HOH MO6 A . H 3 HOH 87 186 29 HOH MO6 A . I 3 HOH 1 30 30 HOH HOH B . I 3 HOH 2 32 32 HOH HOH B . I 3 HOH 3 33 33 HOH HOH B . I 3 HOH 4 34 34 HOH HOH B . I 3 HOH 5 35 35 HOH HOH B . I 3 HOH 6 38 38 HOH HOH B . I 3 HOH 7 40 40 HOH HOH B . I 3 HOH 8 41 41 HOH HOH B . I 3 HOH 9 42 42 HOH HOH B . I 3 HOH 10 44 44 HOH HOH B . I 3 HOH 11 45 45 HOH HOH B . I 3 HOH 12 47 47 HOH HOH B . I 3 HOH 13 48 48 HOH HOH B . I 3 HOH 14 49 49 HOH HOH B . I 3 HOH 15 56 56 HOH HOH B . I 3 HOH 16 57 57 HOH HOH B . I 3 HOH 17 58 58 HOH HOH B . I 3 HOH 18 62 62 HOH HOH B . I 3 HOH 19 65 65 HOH HOH B . I 3 HOH 20 66 66 HOH HOH B . I 3 HOH 21 67 67 HOH HOH B . I 3 HOH 22 69 69 HOH HOH B . I 3 HOH 23 73 73 HOH HOH B . I 3 HOH 24 76 76 HOH HOH B . I 3 HOH 25 86 86 HOH HOH B . I 3 HOH 26 88 88 HOH HOH B . I 3 HOH 27 92 92 HOH HOH B . I 3 HOH 28 93 93 HOH HOH B . I 3 HOH 29 94 94 HOH HOH B . I 3 HOH 30 96 96 HOH HOH B . I 3 HOH 31 100 100 HOH HOH B . I 3 HOH 32 104 104 HOH HOH B . I 3 HOH 33 107 107 HOH HOH B . I 3 HOH 34 109 109 HOH HOH B . I 3 HOH 35 111 111 HOH HOH B . I 3 HOH 36 112 112 HOH HOH B . I 3 HOH 37 113 113 HOH HOH B . I 3 HOH 38 115 115 HOH HOH B . I 3 HOH 39 116 116 HOH HOH B . I 3 HOH 40 117 117 HOH HOH B . I 3 HOH 41 119 119 HOH HOH B . I 3 HOH 42 120 120 HOH HOH B . I 3 HOH 43 126 126 HOH HOH B . I 3 HOH 44 128 128 HOH HOH B . I 3 HOH 45 130 130 HOH HOH B . I 3 HOH 46 131 131 HOH HOH B . I 3 HOH 47 134 134 HOH HOH B . I 3 HOH 48 135 135 HOH HOH B . I 3 HOH 49 138 138 HOH HOH B . I 3 HOH 50 141 141 HOH HOH B . I 3 HOH 51 146 146 HOH HOH B . I 3 HOH 52 147 147 HOH HOH B . I 3 HOH 53 148 148 HOH HOH B . I 3 HOH 54 149 149 HOH HOH B . I 3 HOH 55 152 152 HOH HOH B . I 3 HOH 56 153 153 HOH HOH B . I 3 HOH 57 157 25 HOH MO6 B . I 3 HOH 58 158 25 HOH MO6 B . I 3 HOH 59 159 25 HOH MO6 B . I 3 HOH 60 162 25 HOH MO6 B . I 3 HOH 61 163 26 HOH MO6 B . I 3 HOH 62 164 26 HOH MO6 B . I 3 HOH 63 167 26 HOH MO6 B . I 3 HOH 64 169 27 HOH MO6 B . I 3 HOH 65 173 27 HOH MO6 B . I 3 HOH 66 174 27 HOH MO6 B . I 3 HOH 67 175 28 HOH MO6 B . I 3 HOH 68 176 28 HOH MO6 B . I 3 HOH 69 177 28 HOH MO6 B . I 3 HOH 70 179 28 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ULTIMA 'model building' . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 ULTIMA phasing . ? 5 # _cell.entry_id 423D _cell.length_a 64.067 _cell.length_b 64.067 _cell.length_c 44.679 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 423D _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 146 # _exptl.entry_id 423D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.228 _exptl_crystal.density_percent_sol 46.70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MPD ? ? ? 1 5 2 'NA CACODYLATE' ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1997-01-03 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER, GRAPHITE' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-C' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 423D _reflns.observed_criterion_sigma_I 0.00 _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 23.60 _reflns.d_resolution_high 1.60 _reflns.number_obs 8888 _reflns.number_all 8888 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.0520000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 50.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.7 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.62 _reflns_shell.percent_possible_all 95.0 _reflns_shell.Rmerge_I_obs 0.2350000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.pdbx_redundancy 1.95 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 423D _refine.ls_number_reflns_obs 8888 _refine.ls_number_reflns_all 8888 _refine.pdbx_ls_sigma_I 0.00 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.60 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.1730000 _refine.ls_R_factor_all 0.1740000 _refine.ls_R_factor_R_work 0.1730000 _refine.ls_R_factor_R_free 0.2060000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.70 _refine.ls_number_reflns_R_free 506 _refine.ls_number_parameters 2703 _refine.ls_number_restraints 11946 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER: J.MOL.BIOL. 91, 201-228 (1973)' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'IDEAL B-DNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'RANDOM SELECTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 423D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen 644.67 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 648 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 23.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.030 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 423D _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1710000 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1700000 _pdbx_refine.free_R_factor_4sig_cutoff 0.2020000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.7 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 480 _pdbx_refine.number_reflns_obs_4sig_cutoff 8422 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 423D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 423D _struct.title "5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 423D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 423D _struct_ref.pdbx_db_accession 423D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 423D A 1 ? 12 ? 423D 1 ? 12 ? 1 12 2 1 423D B 1 ? 12 ? 423D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 26 A HOH 165 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 26 A HOH 166 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 26 A HOH 168 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 26 B HOH 163 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 26 B HOH 164 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 26 B HOH 167 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 29 A HOH 181 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 29 A HOH 182 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 29 A HOH 183 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 29 A HOH 184 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 29 A HOH 185 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 29 A HOH 186 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc13 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 160 B MG 25 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc14 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 161 B MG 25 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc15 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 170 B MG 27 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc16 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 171 B MG 27 1_555 ? ? ? ? ? ? ? 1.944 ? ? metalc17 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 172 B MG 27 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc18 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 178 B MG 28 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc19 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 180 B MG 28 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 25 B HOH 157 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 25 B HOH 158 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 25 B HOH 159 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 25 B HOH 162 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 27 B HOH 169 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 27 B HOH 173 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 27 B HOH 174 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc27 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 28 B HOH 175 1_555 ? ? ? ? ? ? ? 1.928 ? ? metalc28 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 28 B HOH 176 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 28 B HOH 177 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 28 B HOH 179 1_555 ? ? ? ? ? ? ? 1.886 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 1 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 1 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 12 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 12 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 165 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? H HOH . ? A HOH 166 ? 1_555 92.0 ? 2 O ? H HOH . ? A HOH 165 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? H HOH . ? A HOH 168 ? 1_555 89.3 ? 3 O ? H HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? H HOH . ? A HOH 168 ? 1_555 90.5 ? 4 O ? H HOH . ? A HOH 165 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 163 ? 1_555 95.6 ? 5 O ? H HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 163 ? 1_555 86.9 ? 6 O ? H HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 163 ? 1_555 174.5 ? 7 O ? H HOH . ? A HOH 165 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 164 ? 1_555 88.4 ? 8 O ? H HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 164 ? 1_555 175.3 ? 9 O ? H HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 164 ? 1_555 94.2 ? 10 O ? I HOH . ? B HOH 163 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 164 ? 1_555 88.4 ? 11 O ? H HOH . ? A HOH 165 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 167 ? 1_555 176.5 ? 12 O ? H HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 167 ? 1_555 91.3 ? 13 O ? H HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 167 ? 1_555 89.8 ? 14 O ? I HOH . ? B HOH 163 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 167 ? 1_555 85.4 ? 15 O ? I HOH . ? B HOH 164 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? I HOH . ? B HOH 167 ? 1_555 88.4 ? 16 O ? H HOH . ? A HOH 181 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 182 ? 1_555 93.3 ? 17 O ? H HOH . ? A HOH 181 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 183 ? 1_555 89.0 ? 18 O ? H HOH . ? A HOH 182 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 183 ? 1_555 85.4 ? 19 O ? H HOH . ? A HOH 181 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 184 ? 1_555 87.1 ? 20 O ? H HOH . ? A HOH 182 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 184 ? 1_555 169.4 ? 21 O ? H HOH . ? A HOH 183 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 184 ? 1_555 84.0 ? 22 O ? H HOH . ? A HOH 181 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 89.9 ? 23 O ? H HOH . ? A HOH 182 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 89.6 ? 24 O ? H HOH . ? A HOH 183 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 174.8 ? 25 O ? H HOH . ? A HOH 184 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 101.1 ? 26 O ? H HOH . ? A HOH 181 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 186 ? 1_555 177.7 ? 27 O ? H HOH . ? A HOH 182 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 186 ? 1_555 85.2 ? 28 O ? H HOH . ? A HOH 183 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 186 ? 1_555 89.1 ? 29 O ? H HOH . ? A HOH 184 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 186 ? 1_555 94.1 ? 30 O ? H HOH . ? A HOH 185 ? 1_555 MG ? D MG . ? A MG 29 ? 1_555 O ? H HOH . ? A HOH 186 ? 1_555 91.7 ? 31 O ? H HOH . ? A HOH 160 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? H HOH . ? A HOH 161 ? 1_555 88.4 ? 32 O ? H HOH . ? A HOH 160 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 157 ? 1_555 85.5 ? 33 O ? H HOH . ? A HOH 161 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 157 ? 1_555 85.9 ? 34 O ? H HOH . ? A HOH 160 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 158 ? 1_555 170.3 ? 35 O ? H HOH . ? A HOH 161 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 158 ? 1_555 92.6 ? 36 O ? I HOH . ? B HOH 157 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 158 ? 1_555 84.9 ? 37 O ? H HOH . ? A HOH 160 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 159 ? 1_555 87.7 ? 38 O ? H HOH . ? A HOH 161 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 159 ? 1_555 176.1 ? 39 O ? I HOH . ? B HOH 157 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 159 ? 1_555 93.7 ? 40 O ? I HOH . ? B HOH 158 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 159 ? 1_555 91.2 ? 41 O ? H HOH . ? A HOH 160 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 162 ? 1_555 92.5 ? 42 O ? H HOH . ? A HOH 161 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 162 ? 1_555 89.1 ? 43 O ? I HOH . ? B HOH 157 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 162 ? 1_555 174.7 ? 44 O ? I HOH . ? B HOH 158 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 162 ? 1_555 97.2 ? 45 O ? I HOH . ? B HOH 159 ? 1_555 MG ? E MG . ? B MG 25 ? 1_555 O ? I HOH . ? B HOH 162 ? 1_555 91.2 ? 46 O ? H HOH . ? A HOH 170 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? A HOH 171 ? 1_555 99.2 ? 47 O ? H HOH . ? A HOH 170 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? A HOH 172 ? 1_555 175.3 ? 48 O ? H HOH . ? A HOH 171 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? H HOH . ? A HOH 172 ? 1_555 85.0 ? 49 O ? H HOH . ? A HOH 170 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 169 ? 1_555 90.7 ? 50 O ? H HOH . ? A HOH 171 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 169 ? 1_555 89.1 ? 51 O ? H HOH . ? A HOH 172 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 169 ? 1_555 87.1 ? 52 O ? H HOH . ? A HOH 170 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 173 ? 1_555 83.9 ? 53 O ? H HOH . ? A HOH 171 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 173 ? 1_555 176.3 ? 54 O ? H HOH . ? A HOH 172 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 173 ? 1_555 91.9 ? 55 O ? I HOH . ? B HOH 169 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 173 ? 1_555 88.8 ? 56 O ? H HOH . ? A HOH 170 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 174 ? 1_555 90.7 ? 57 O ? H HOH . ? A HOH 171 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 174 ? 1_555 91.7 ? 58 O ? H HOH . ? A HOH 172 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 174 ? 1_555 91.4 ? 59 O ? I HOH . ? B HOH 169 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 174 ? 1_555 178.2 ? 60 O ? I HOH . ? B HOH 173 ? 1_555 MG ? F MG . ? B MG 27 ? 1_555 O ? I HOH . ? B HOH 174 ? 1_555 90.3 ? 61 O ? H HOH . ? A HOH 178 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? H HOH . ? A HOH 180 ? 1_555 82.8 ? 62 O ? H HOH . ? A HOH 178 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 175 ? 1_555 98.4 ? 63 O ? H HOH . ? A HOH 180 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 175 ? 1_555 175.3 ? 64 O ? H HOH . ? A HOH 178 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 176 ? 1_555 168.5 ? 65 O ? H HOH . ? A HOH 180 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 176 ? 1_555 86.2 ? 66 O ? I HOH . ? B HOH 175 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 176 ? 1_555 92.4 ? 67 O ? H HOH . ? A HOH 178 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 177 ? 1_555 87.2 ? 68 O ? H HOH . ? A HOH 180 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 177 ? 1_555 89.5 ? 69 O ? I HOH . ? B HOH 175 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 177 ? 1_555 86.1 ? 70 O ? I HOH . ? B HOH 176 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 177 ? 1_555 89.8 ? 71 O ? H HOH . ? A HOH 178 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 179 ? 1_555 94.9 ? 72 O ? H HOH . ? A HOH 180 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 179 ? 1_555 87.2 ? 73 O ? I HOH . ? B HOH 175 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 179 ? 1_555 97.1 ? 74 O ? I HOH . ? B HOH 176 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 179 ? 1_555 87.5 ? 75 O ? I HOH . ? B HOH 177 ? 1_555 MG ? G MG . ? B MG 28 ? 1_555 O ? I HOH . ? B HOH 179 ? 1_555 175.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 25 ? 6 'BINDING SITE FOR RESIDUE MG B 25' AC2 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' AC3 Software B MG 27 ? 6 'BINDING SITE FOR RESIDUE MG B 27' AC4 Software B MG 28 ? 6 'BINDING SITE FOR RESIDUE MG B 28' AC5 Software A MG 29 ? 6 'BINDING SITE FOR RESIDUE MG A 29' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH A 160 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH A 161 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH B 157 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH B 158 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH B 159 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH B 162 . ? 1_555 ? 7 AC2 6 HOH H . ? HOH A 165 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH A 166 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH A 168 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH B 163 . ? 1_555 ? 11 AC2 6 HOH I . ? HOH B 164 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH B 167 . ? 1_555 ? 13 AC3 6 HOH H . ? HOH A 170 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH A 171 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH A 172 . ? 1_555 ? 16 AC3 6 HOH I . ? HOH B 169 . ? 1_555 ? 17 AC3 6 HOH I . ? HOH B 173 . ? 1_555 ? 18 AC3 6 HOH I . ? HOH B 174 . ? 1_555 ? 19 AC4 6 HOH H . ? HOH A 178 . ? 1_555 ? 20 AC4 6 HOH H . ? HOH A 180 . ? 1_555 ? 21 AC4 6 HOH I . ? HOH B 175 . ? 1_555 ? 22 AC4 6 HOH I . ? HOH B 176 . ? 1_555 ? 23 AC4 6 HOH I . ? HOH B 177 . ? 1_555 ? 24 AC4 6 HOH I . ? HOH B 179 . ? 1_555 ? 25 AC5 6 HOH H . ? HOH A 181 . ? 1_555 ? 26 AC5 6 HOH H . ? HOH A 182 . ? 1_555 ? 27 AC5 6 HOH H . ? HOH A 183 . ? 1_555 ? 28 AC5 6 HOH H . ? HOH A 184 . ? 1_555 ? 29 AC5 6 HOH H . ? HOH A 185 . ? 1_555 ? 30 AC5 6 HOH H . ? HOH A 186 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 102.38 108.00 -5.62 0.70 N 2 1 C2 A DA 1 ? ? N3 A DA 1 ? ? C4 A DA 1 ? ? 105.78 110.60 -4.81 0.50 N 3 1 N3 A DA 1 ? ? C4 A DA 1 ? ? C5 A DA 1 ? ? 131.06 126.80 4.26 0.70 N 4 1 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 125.26 118.60 6.66 0.60 N 5 1 C5 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 118.35 123.70 -5.35 0.80 N 6 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 103.46 108.00 -4.54 0.70 N 7 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 101.02 108.00 -6.98 0.70 N 8 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 124.55 118.90 5.65 0.60 N 9 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.57 121.90 -5.33 0.70 N 10 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 129.73 125.10 4.63 0.60 N 11 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 101.24 104.30 -3.06 0.50 N 12 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 126.15 119.90 6.25 0.60 N 13 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 124.27 128.60 -4.33 0.60 N 14 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 120.67 117.00 3.67 0.50 N 15 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 102.25 108.00 -5.75 0.70 N 16 1 C2 A DC 6 ? ? N3 A DC 6 ? ? C4 A DC 6 ? ? 125.49 119.90 5.59 0.50 N 17 1 N3 A DC 6 ? ? C4 A DC 6 ? ? C5 A DC 6 ? ? 118.56 121.90 -3.34 0.40 N 18 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 102.97 108.00 -5.03 0.70 N 19 1 C6 A DG 7 ? ? N1 A DG 7 ? ? C2 A DG 7 ? ? 120.96 125.10 -4.14 0.60 N 20 1 N3 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 125.52 128.60 -3.08 0.50 N 21 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 100.58 108.00 -7.42 0.70 N 22 1 C2 A DC 9 ? ? N3 A DC 9 ? ? C4 A DC 9 ? ? 123.86 119.90 3.96 0.50 N 23 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 127.11 121.90 5.21 0.70 N 24 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 107.40 111.90 -4.50 0.50 N 25 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 107.52 111.50 -3.98 0.50 N 26 1 "O4'" A DT 12 ? ? "C4'" A DT 12 ? ? "C3'" A DT 12 ? ? 101.49 104.50 -3.01 0.40 N 27 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 102.55 108.00 -5.45 0.70 N 28 1 N1 B DA 13 ? ? C2 B DA 13 ? ? N3 B DA 13 ? ? 132.38 129.30 3.08 0.50 N 29 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 103.27 108.00 -4.73 0.70 N 30 1 C6 B DC 14 ? ? N1 B DC 14 ? ? C2 B DC 14 ? ? 115.98 120.30 -4.32 0.40 N 31 1 C2 B DC 14 ? ? N3 B DC 14 ? ? C4 B DC 14 ? ? 126.94 119.90 7.04 0.50 N 32 1 N3 B DC 14 ? ? C4 B DC 14 ? ? C5 B DC 14 ? ? 118.00 121.90 -3.90 0.40 N 33 1 C4 B DC 14 ? ? C5 B DC 14 ? ? C6 B DC 14 ? ? 113.20 117.40 -4.20 0.50 N 34 1 C5 B DC 14 ? ? C6 B DC 14 ? ? N1 B DC 14 ? ? 129.34 121.00 8.34 0.50 N 35 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 100.90 108.00 -7.10 0.70 N 36 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 97.43 102.40 -4.97 0.80 N 37 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 127.68 119.70 7.98 1.20 Y 38 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 111.47 118.60 -7.13 0.60 N 39 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 135.08 129.30 5.78 0.50 N 40 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.34 117.70 3.64 0.50 N 41 1 C5 B DA 17 ? ? N7 B DA 17 ? ? C8 B DA 17 ? ? 106.98 103.90 3.08 0.50 N 42 1 N7 B DA 17 ? ? C8 B DA 17 ? ? N9 B DA 17 ? ? 110.65 113.80 -3.15 0.50 N 43 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 114.55 118.60 -4.05 0.60 N 44 1 "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? "C1'" B DC 18 ? ? 97.03 102.40 -5.37 0.80 N 45 1 C2 B DG 19 ? ? N3 B DG 19 ? ? C4 B DG 19 ? ? 116.24 111.90 4.34 0.50 N 46 1 C4 B DG 19 ? ? C5 B DG 19 ? ? C6 B DG 19 ? ? 115.02 118.80 -3.78 0.60 N 47 1 C5 B DG 19 ? ? C6 B DG 19 ? ? N1 B DG 19 ? ? 117.04 111.50 5.54 0.50 N 48 1 C5 B DG 19 ? ? N7 B DG 19 ? ? C8 B DG 19 ? ? 107.33 104.30 3.03 0.50 N 49 1 N7 B DG 19 ? ? C8 B DG 19 ? ? N9 B DG 19 ? ? 109.43 113.10 -3.67 0.50 N 50 1 C8 B DG 19 ? ? N9 B DG 19 ? ? C4 B DG 19 ? ? 109.38 106.40 2.98 0.40 N 51 1 C6 B DG 19 ? ? C5 B DG 19 ? ? N7 B DG 19 ? ? 134.29 130.40 3.89 0.60 N 52 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 101.00 108.00 -7.00 0.70 N 53 1 C5 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 120.44 124.90 -4.46 0.70 N 54 1 "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? "C1'" B DC 21 ? ? 97.40 102.40 -5.00 0.80 N 55 1 C5 B DG 23 ? ? C6 B DG 23 ? ? N1 B DG 23 ? ? 114.57 111.50 3.07 0.50 N 56 1 C8 B DG 23 ? ? N9 B DG 23 ? ? C4 B DG 23 ? ? 109.69 106.40 3.29 0.40 N 57 1 "O4'" B DT 24 ? ? "C4'" B DT 24 ? ? "C3'" B DT 24 ? ? 102.09 104.50 -2.41 0.40 N 58 1 N1 B DT 24 ? ? C2 B DT 24 ? ? O2 B DT 24 ? ? 117.49 123.10 -5.61 0.80 N 59 1 N3 B DT 24 ? ? C2 B DT 24 ? ? O2 B DT 24 ? ? 128.65 122.30 6.35 0.60 N 60 1 N3 B DT 24 ? ? C4 B DT 24 ? ? O4 B DT 24 ? ? 123.65 119.90 3.75 0.60 N 61 1 C6 B DT 24 ? ? C5 B DT 24 ? ? C7 B DT 24 ? ? 127.22 122.90 4.32 0.60 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 133 ? H HOH . 2 1 A HOH 150 ? H HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 423D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 12 1_555 -0.114 -0.157 0.148 8.238 -11.191 0.917 1 A_DA1:DT24_B A 1 ? B 24 ? 20 1 1 A DC 2 1_555 B DG 11 1_555 0.360 -0.148 -0.071 0.244 -13.952 1.670 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.011 -0.021 0.080 -5.911 -7.597 0.153 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.326 -0.235 -0.111 -1.946 -5.299 0.218 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.056 -0.136 0.097 -0.457 -13.588 -1.272 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DC 6 1_555 B DG 7 1_555 0.193 -0.140 0.087 -2.146 -10.450 -2.173 6 A_DC6:DG19_B A 6 ? B 19 ? 19 1 1 A DG 7 1_555 B DC 6 1_555 -0.215 -0.103 -0.413 -13.179 -4.575 -0.065 7 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.232 -0.038 0.011 3.449 -6.735 2.666 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.026 -0.173 0.103 -4.483 -17.005 2.051 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.130 -0.097 0.058 3.316 -11.009 -1.358 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DG 11 1_555 B DC 2 1_555 -0.249 -0.105 -0.086 -4.092 -12.536 0.924 11 A_DG11:DC14_B A 11 ? B 14 ? 19 1 1 A DT 12 1_555 B DA 1 1_555 0.023 -0.168 -0.114 -2.276 -11.706 4.796 12 A_DT12:DA13_B A 12 ? B 13 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.514 -0.372 3.489 0.340 -0.090 36.895 -0.575 0.862 3.485 -0.142 -0.537 36.897 1 AA_DA1DC2:DG23DT24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DC 3 1_555 B DG 10 1_555 0.339 -0.088 3.449 0.375 7.439 33.638 -1.368 -0.511 3.357 12.662 -0.639 34.430 2 AA_DC2DC3:DG22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 1.132 0.918 3.284 5.090 5.261 33.660 0.690 -1.080 3.512 8.955 -8.663 34.424 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -1.123 1.077 3.362 -4.587 2.929 38.976 1.231 1.091 3.535 4.364 6.834 39.340 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DC 6 1_555 B DG 7 1_555 0.340 -0.359 3.332 -0.287 2.727 34.510 -1.028 -0.616 3.292 4.588 0.482 34.615 5 AA_DA5DC6:DG19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DC 6 1_555 B DG 7 1_555 A DG 7 1_555 B DC 6 1_555 0.934 0.384 3.576 7.233 7.671 35.396 -0.571 -0.365 3.691 12.284 -11.583 36.885 6 AA_DC6DG7:DC18DG19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.143 -0.196 2.916 -3.698 3.848 26.847 -1.264 -0.514 2.854 8.185 7.865 27.363 7 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.651 -0.192 3.337 2.530 -0.913 40.764 -0.172 -0.647 3.373 -1.309 -3.627 40.849 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.536 0.450 3.184 0.380 10.872 31.177 -1.051 1.009 3.154 19.500 -0.682 32.976 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DG 11 1_555 B DC 2 1_555 0.391 -0.258 3.441 0.132 5.544 34.668 -1.296 -0.628 3.363 9.231 -0.220 35.095 10 AA_DG10DG11:DC14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 11 1_555 B DC 2 1_555 A DT 12 1_555 B DA 1 1_555 0.046 -0.467 3.256 0.196 1.437 32.842 -1.069 -0.049 3.233 2.540 -0.346 32.873 11 AA_DG11DT12:DA13DC14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'IDEAL B-DNA' # _atom_sites.entry_id 423D _atom_sites.fract_transf_matrix[1][1] 0.015609 _atom_sites.fract_transf_matrix[1][2] 0.009012 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018023 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022382 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_