data_435D # _entry.id 435D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 435D pdb_0000435d 10.2210/pdb435d/pdb RCSB AR0010 ? ? WWPDB D_1000179230 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-06-14 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-28 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.value' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 435D _pdbx_database_status.recvd_initial_deposition_date 1998-10-23 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mueller, U.' 1 'Schuebel, H.' 2 'Sprinzl, M.' 3 'Heinemann, U.' 4 # _citation.id primary _citation.title 'Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution.' _citation.journal_abbrev RNA _citation.journal_volume 5 _citation.page_first 670 _citation.page_last 677 _citation.year 1999 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10334337 _citation.pdbx_database_id_DOI 10.1017/S1355838299982304 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mueller, U.' 1 ? primary 'Schubel, H.' 2 ? primary 'Sprinzl, M.' 3 ? primary 'Heinemann, U.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*AP*GP*CP*CP*CP*C)-3') ; 2156.347 2 ? ? ? ? 2 polymer syn ;RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3') ; 2276.419 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 133 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no UAGCCCC UAGCCCC A,C ? 2 polyribonucleotide no no GGGGCUA GGGGCUA B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 A n 1 3 G n 1 4 C n 1 5 C n 1 6 C n 1 7 C n 2 1 G n 2 2 G n 2 3 G n 2 4 G n 2 5 C n 2 6 U n 2 7 A n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 A 2 2 2 A A A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n B 2 1 G 1 8 8 G G B . n B 2 2 G 2 9 9 G G B . n B 2 3 G 3 10 10 G G B . n B 2 4 G 4 11 11 G G B . n B 2 5 C 5 12 12 C C B . n B 2 6 U 6 13 13 U U B . n B 2 7 A 7 14 14 A A B . n C 1 1 U 1 1 1 U U C . n C 1 2 A 2 2 2 A A C . n C 1 3 G 3 3 3 G G C . n C 1 4 C 4 4 4 C C C . n C 1 5 C 5 5 5 C C C . n C 1 6 C 6 6 6 C C C . n C 1 7 C 7 7 7 C C C . n D 2 1 G 1 8 8 G G D . n D 2 2 G 2 9 9 G G D . n D 2 3 G 3 10 10 G G D . n D 2 4 G 4 11 11 G G D . n D 2 5 C 5 12 12 C C D . n D 2 6 U 6 13 13 U U D . n D 2 7 A 7 14 14 A A D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA 1 8 2 NA NA A . F 3 NA 1 1 1 NA NA D . G 4 HOH 1 996 996 HOH HOH A . G 4 HOH 2 999 999 HOH HOH A . G 4 HOH 3 1000 1000 HOH HOH A . G 4 HOH 4 1001 1001 HOH HOH A . G 4 HOH 5 1004 1004 HOH HOH A . G 4 HOH 6 1012 1012 HOH HOH A . G 4 HOH 7 1014 1014 HOH HOH A . G 4 HOH 8 1019 1019 HOH HOH A . G 4 HOH 9 1021 1021 HOH HOH A . G 4 HOH 10 1023 1023 HOH HOH A . G 4 HOH 11 1024 1024 HOH HOH A . G 4 HOH 12 1028 1028 HOH HOH A . G 4 HOH 13 1029 1029 HOH HOH A . G 4 HOH 14 1032 1032 HOH HOH A . G 4 HOH 15 1033 1033 HOH HOH A . G 4 HOH 16 1047 1047 HOH HOH A . G 4 HOH 17 1051 1051 HOH HOH A . G 4 HOH 18 1052 1052 HOH HOH A . G 4 HOH 19 1057 1057 HOH HOH A . G 4 HOH 20 1064 1064 HOH HOH A . G 4 HOH 21 1075 1075 HOH HOH A . G 4 HOH 22 1090 1090 HOH HOH A . G 4 HOH 23 1091 1091 HOH HOH A . G 4 HOH 24 1096 1096 HOH HOH A . G 4 HOH 25 1103 1103 HOH HOH A . G 4 HOH 26 1104 1104 HOH HOH A . G 4 HOH 27 1113 1113 HOH HOH A . G 4 HOH 28 1119 1119 HOH HOH A . G 4 HOH 29 1120 1120 HOH HOH A . G 4 HOH 30 1130 1130 HOH HOH A . G 4 HOH 31 1132 1132 HOH HOH A . G 4 HOH 32 1136 1136 HOH HOH A . G 4 HOH 33 1137 1137 HOH HOH A . H 4 HOH 1 1002 1002 HOH HOH B . H 4 HOH 2 1006 1006 HOH HOH B . H 4 HOH 3 1013 1013 HOH HOH B . H 4 HOH 4 1016 1016 HOH HOH B . H 4 HOH 5 1018 1018 HOH HOH B . H 4 HOH 6 1025 1025 HOH HOH B . H 4 HOH 7 1030 1030 HOH HOH B . H 4 HOH 8 1034 1034 HOH HOH B . H 4 HOH 9 1037 1037 HOH HOH B . H 4 HOH 10 1049 1049 HOH HOH B . H 4 HOH 11 1054 1054 HOH HOH B . H 4 HOH 12 1061 1061 HOH HOH B . H 4 HOH 13 1065 1065 HOH HOH B . H 4 HOH 14 1066 1066 HOH HOH B . H 4 HOH 15 1070 1070 HOH HOH B . H 4 HOH 16 1072 1072 HOH HOH B . H 4 HOH 17 1077 1077 HOH HOH B . H 4 HOH 18 1078 1078 HOH HOH B . H 4 HOH 19 1082 1082 HOH HOH B . H 4 HOH 20 1088 1088 HOH HOH B . H 4 HOH 21 1093 1093 HOH HOH B . H 4 HOH 22 1098 1098 HOH HOH B . H 4 HOH 23 1099 1099 HOH HOH B . H 4 HOH 24 1111 1111 HOH HOH B . H 4 HOH 25 1114 1114 HOH HOH B . H 4 HOH 26 1125 1125 HOH HOH B . H 4 HOH 27 1127 1127 HOH HOH B . H 4 HOH 28 1128 1128 HOH HOH B . H 4 HOH 29 1133 1133 HOH HOH B . H 4 HOH 30 1138 1138 HOH HOH B . H 4 HOH 31 1139 1139 HOH HOH B . I 4 HOH 1 1005 1005 HOH HOH C . I 4 HOH 2 1008 1008 HOH HOH C . I 4 HOH 3 1010 1010 HOH HOH C . I 4 HOH 4 1020 1020 HOH HOH C . I 4 HOH 5 1026 1026 HOH HOH C . I 4 HOH 6 1031 1031 HOH HOH C . I 4 HOH 7 1035 1035 HOH HOH C . I 4 HOH 8 1038 1038 HOH HOH C . I 4 HOH 9 1039 1039 HOH HOH C . I 4 HOH 10 1042 1042 HOH HOH C . I 4 HOH 11 1055 1055 HOH HOH C . I 4 HOH 12 1056 1056 HOH HOH C . I 4 HOH 13 1063 1063 HOH HOH C . I 4 HOH 14 1069 1069 HOH HOH C . I 4 HOH 15 1076 1076 HOH HOH C . I 4 HOH 16 1081 1081 HOH HOH C . I 4 HOH 17 1084 1084 HOH HOH C . I 4 HOH 18 1085 1085 HOH HOH C . I 4 HOH 19 1086 1086 HOH HOH C . I 4 HOH 20 1087 1087 HOH HOH C . I 4 HOH 21 1089 1089 HOH HOH C . I 4 HOH 22 1094 1094 HOH HOH C . I 4 HOH 23 1097 1097 HOH HOH C . I 4 HOH 24 1100 1100 HOH HOH C . I 4 HOH 25 1101 1101 HOH HOH C . I 4 HOH 26 1106 1106 HOH HOH C . I 4 HOH 27 1109 1109 HOH HOH C . I 4 HOH 28 1116 1116 HOH HOH C . I 4 HOH 29 1117 1117 HOH HOH C . I 4 HOH 30 1126 1126 HOH HOH C . I 4 HOH 31 1129 1129 HOH HOH C . J 4 HOH 1 997 997 HOH HOH D . J 4 HOH 2 998 998 HOH HOH D . J 4 HOH 3 1003 1003 HOH HOH D . J 4 HOH 4 1007 1007 HOH HOH D . J 4 HOH 5 1009 1009 HOH HOH D . J 4 HOH 6 1015 1015 HOH HOH D . J 4 HOH 7 1017 1017 HOH HOH D . J 4 HOH 8 1036 1036 HOH HOH D . J 4 HOH 9 1040 1040 HOH HOH D . J 4 HOH 10 1041 1041 HOH HOH D . J 4 HOH 11 1043 1043 HOH HOH D . J 4 HOH 12 1045 1045 HOH HOH D . J 4 HOH 13 1046 1046 HOH HOH D . J 4 HOH 14 1048 1048 HOH HOH D . J 4 HOH 15 1050 1050 HOH HOH D . J 4 HOH 16 1053 1053 HOH HOH D . J 4 HOH 17 1058 1058 HOH HOH D . J 4 HOH 18 1059 1059 HOH HOH D . J 4 HOH 19 1060 1060 HOH HOH D . J 4 HOH 20 1062 1062 HOH HOH D . J 4 HOH 21 1067 1067 HOH HOH D . J 4 HOH 22 1071 1071 HOH HOH D . J 4 HOH 23 1074 1074 HOH HOH D . J 4 HOH 24 1079 1079 HOH HOH D . J 4 HOH 25 1080 1080 HOH HOH D . J 4 HOH 26 1083 1083 HOH HOH D . J 4 HOH 27 1092 1092 HOH HOH D . J 4 HOH 28 1095 1095 HOH HOH D . J 4 HOH 29 1105 1105 HOH HOH D . J 4 HOH 30 1107 1107 HOH HOH D . J 4 HOH 31 1108 1108 HOH HOH D . J 4 HOH 32 1110 1110 HOH HOH D . J 4 HOH 33 1115 1115 HOH HOH D . J 4 HOH 34 1118 1118 HOH HOH D . J 4 HOH 35 1121 1121 HOH HOH D . J 4 HOH 36 1131 1131 HOH HOH D . J 4 HOH 37 1134 1134 HOH HOH D . J 4 HOH 38 1135 1135 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 435D _cell.length_a 26.680 _cell.length_b 26.697 _cell.length_c 30.459 _cell.angle_alpha 104.29 _cell.angle_beta 104.22 _cell.angle_gamma 91.66 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 435D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting triclinic _symmetry.Int_Tables_number 1 # _exptl.entry_id 435D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.12 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SPERMINE ? ? ? 1 2 1 KCL ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-11-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 435D _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 1.4 _reflns.number_obs 13834 _reflns.number_all 13834 _reflns.percent_possible_obs 88.7 _reflns.pdbx_Rmerge_I_obs 0.0570000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.6 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all 80.7 _reflns_shell.Rmerge_I_obs 0.2880000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 435D _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 13695 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 88.7 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1609000 _refine.ls_R_factor_R_work 0.1587000 _refine.ls_R_factor_R_free 0.2175000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 627 _refine.ls_number_parameters 6493 _refine.ls_number_restraints 20551 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER,J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 'CANONICAL A-FORM RNA DUPLEX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON, G. ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'THIN SHELL' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 435D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen 0. _refine_analyze.occupancy_sum_non_hydrogen 721. _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 586 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 721 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.028 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.034 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.018 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.043 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 435D _pdbx_refine.R_factor_all_no_cutoff 0.1600000 _pdbx_refine.R_factor_obs_no_cutoff 0.1580000 _pdbx_refine.free_R_factor_no_cutoff 0.2170000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 4.6 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 627 _pdbx_refine.R_factor_all_4sig_cutoff 0.1381000 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1357000 _pdbx_refine.free_R_factor_4sig_cutoff 0.1950000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.7 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 497 _pdbx_refine.number_reflns_obs_4sig_cutoff 10683 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 435D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 435D _struct.title ;5'-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 435D _struct_keywords.pdbx_keywords RNA _struct_keywords.text '7 BASE-PAIR TRNA ALA ACCEPTOR STEM C70 MUTANT, DOUBLE HELIX, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 435D 435D ? ? ? 2 2 PDB 435D 435D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 435D A 1 ? 7 ? 435D 1 ? 7 ? 1 7 2 2 435D B 1 ? 7 ? 435D 8 ? 14 ? 8 14 3 1 435D C 1 ? 7 ? 435D 1 ? 7 ? 1 7 4 2 435D D 1 ? 7 ? 435D 8 ? 14 ? 8 14 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,G,H 2 1 C,D,F,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id 1 2 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 8 A HOH 1113 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc2 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 8 A HOH 1137 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc3 metalc ? ? I HOH . O ? ? ? 1_555 F NA . NA ? ? C HOH 1076 D NA 1 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc4 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? D NA 1 D HOH 1048 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc5 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? D NA 1 D HOH 1053 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc6 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? D NA 1 D HOH 1115 1_555 ? ? ? ? ? ? ? 2.408 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 B A 7 N1 ? ? A U 1 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 B A 7 N6 ? ? A U 1 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A A 2 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 2 B U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 2 B U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 3 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 3 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 3 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 5 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 5 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 5 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 6 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 6 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 6 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 7 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 7 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 7 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C U 1 N3 ? ? ? 1_555 D A 7 N1 ? ? C U 1 D A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C U 1 O4 ? ? ? 1_555 D A 7 N6 ? ? C U 1 D A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C A 2 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 2 D U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C A 2 N6 ? ? ? 1_555 D U 6 O4 ? ? C A 2 D U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 3 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 3 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 3 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 4 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 4 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 4 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 5 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 5 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 5 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 6 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 6 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 6 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 7 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 7 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 7 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 1113 ? 1_555 NA ? E NA . ? A NA 8 ? 1_555 O ? G HOH . ? A HOH 1137 ? 1_555 64.0 ? 2 O ? I HOH . ? C HOH 1076 ? 1_555 NA ? F NA . ? D NA 1 ? 1_555 O ? J HOH . ? D HOH 1048 ? 1_555 100.3 ? 3 O ? I HOH . ? C HOH 1076 ? 1_555 NA ? F NA . ? D NA 1 ? 1_555 O ? J HOH . ? D HOH 1053 ? 1_555 73.5 ? 4 O ? J HOH . ? D HOH 1048 ? 1_555 NA ? F NA . ? D NA 1 ? 1_555 O ? J HOH . ? D HOH 1053 ? 1_555 79.5 ? 5 O ? I HOH . ? C HOH 1076 ? 1_555 NA ? F NA . ? D NA 1 ? 1_555 O ? J HOH . ? D HOH 1115 ? 1_555 145.3 ? 6 O ? J HOH . ? D HOH 1048 ? 1_555 NA ? F NA . ? D NA 1 ? 1_555 O ? J HOH . ? D HOH 1115 ? 1_555 95.3 ? 7 O ? J HOH . ? D HOH 1053 ? 1_555 NA ? F NA . ? D NA 1 ? 1_555 O ? J HOH . ? D HOH 1115 ? 1_555 79.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D NA 1 ? 4 'BINDING SITE FOR RESIDUE NA D 1' AC2 Software A NA 8 ? 2 'BINDING SITE FOR RESIDUE NA A 8' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH I . ? HOH C 1076 . ? 1_555 ? 2 AC1 4 HOH J . ? HOH D 1048 . ? 1_555 ? 3 AC1 4 HOH J . ? HOH D 1053 . ? 1_555 ? 4 AC1 4 HOH J . ? HOH D 1115 . ? 1_555 ? 5 AC2 2 HOH G . ? HOH A 1113 . ? 1_555 ? 6 AC2 2 HOH G . ? HOH A 1137 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A U 1 ? ? "C2'" A U 1 ? ? 1.436 1.523 -0.087 0.011 N 2 1 "C3'" A A 2 ? ? "C2'" A A 2 ? ? 1.450 1.523 -0.073 0.011 N 3 1 "C3'" A G 3 ? ? "C2'" A G 3 ? ? 1.452 1.523 -0.071 0.011 N 4 1 "C3'" A C 4 ? ? "C2'" A C 4 ? ? 1.450 1.523 -0.073 0.011 N 5 1 "C3'" A C 7 ? ? "C2'" A C 7 ? ? 1.455 1.523 -0.068 0.011 N 6 1 "C3'" B G 9 ? ? "C2'" B G 9 ? ? 1.446 1.523 -0.077 0.011 N 7 1 "C3'" B G 11 ? ? "C2'" B G 11 ? ? 1.456 1.523 -0.067 0.011 N 8 1 "C3'" B C 12 ? ? "C2'" B C 12 ? ? 1.446 1.523 -0.077 0.011 N 9 1 "C3'" B U 13 ? ? "C2'" B U 13 ? ? 1.442 1.523 -0.081 0.011 N 10 1 "C3'" C U 1 ? ? "C2'" C U 1 ? ? 1.441 1.523 -0.082 0.011 N 11 1 "C3'" C A 2 ? ? "C2'" C A 2 ? ? 1.455 1.523 -0.068 0.011 N 12 1 "C3'" C C 4 ? ? "C2'" C C 4 ? ? 1.454 1.523 -0.069 0.011 N 13 1 "C3'" C C 5 ? ? "C2'" C C 5 ? ? 1.442 1.523 -0.081 0.011 N 14 1 "C3'" D G 8 ? ? "C2'" D G 8 ? ? 1.433 1.523 -0.090 0.011 N 15 1 "C3'" D G 9 ? ? "C2'" D G 9 ? ? 1.452 1.523 -0.071 0.011 N 16 1 "C3'" D G 10 ? ? "C2'" D G 10 ? ? 1.453 1.523 -0.070 0.011 N 17 1 "C3'" D G 11 ? ? "C2'" D G 11 ? ? 1.451 1.523 -0.072 0.011 N 18 1 "C3'" D C 12 ? ? "C2'" D C 12 ? ? 1.439 1.523 -0.084 0.011 N 19 1 "C3'" D U 13 ? ? "C2'" D U 13 ? ? 1.452 1.523 -0.071 0.011 N 20 1 "C3'" D A 14 ? ? "C2'" D A 14 ? ? 1.449 1.523 -0.074 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A U 1 ? ? "O4'" A U 1 ? ? "C4'" A U 1 ? ? 105.04 109.70 -4.66 0.70 N 2 1 "O5'" A A 2 ? ? "C5'" A A 2 ? ? "C4'" A A 2 ? ? 100.34 109.40 -9.06 0.80 N 3 1 "C1'" A G 3 ? ? "O4'" A G 3 ? ? "C4'" A G 3 ? ? 104.79 109.70 -4.91 0.70 N 4 1 "O5'" A C 4 ? ? "C5'" A C 4 ? ? "C4'" A C 4 ? ? 103.74 109.40 -5.66 0.80 N 5 1 "C1'" A C 7 ? ? "O4'" A C 7 ? ? "C4'" A C 7 ? ? 104.93 109.70 -4.77 0.70 N 6 1 "C3'" B G 8 ? ? "C2'" B G 8 ? ? "C1'" B G 8 ? ? 95.44 101.30 -5.86 0.70 N 7 1 "C3'" B G 8 ? ? "O3'" B G 8 ? ? P B G 9 ? ? 130.04 119.70 10.34 1.20 Y 8 1 "C1'" B G 10 ? ? "O4'" B G 10 ? ? "C4'" B G 10 ? ? 104.76 109.70 -4.94 0.70 N 9 1 "C3'" B G 10 ? ? "C2'" B G 10 ? ? "C1'" B G 10 ? ? 96.89 101.30 -4.41 0.70 N 10 1 P B G 11 ? ? "O5'" B G 11 ? ? "C5'" B G 11 ? ? 134.80 120.90 13.90 1.60 N 11 1 "O5'" B U 13 ? ? "C5'" B U 13 ? ? "C4'" B U 13 ? ? 104.59 109.40 -4.81 0.80 N 12 1 P C A 2 ? ? "O5'" C A 2 ? ? "C5'" C A 2 ? ? 110.25 120.90 -10.65 1.60 N 13 1 "O5'" C G 3 ? ? "C5'" C G 3 ? ? "C4'" C G 3 ? ? 104.16 109.40 -5.24 0.80 N 14 1 "C1'" C G 3 ? ? "O4'" C G 3 ? ? "C4'" C G 3 ? ? 105.28 109.70 -4.42 0.70 N 15 1 "C3'" C G 3 ? ? "C2'" C G 3 ? ? "C1'" C G 3 ? ? 96.50 101.30 -4.80 0.70 N 16 1 "C1'" C C 6 ? ? "O4'" C C 6 ? ? "C4'" C C 6 ? ? 105.22 109.70 -4.48 0.70 N 17 1 "O5'" D G 8 ? ? "C5'" D G 8 ? ? "C4'" D G 8 ? ? 102.75 109.40 -6.65 0.80 N 18 1 "O5'" D G 9 ? ? "C5'" D G 9 ? ? "C4'" D G 9 ? ? 103.48 109.40 -5.92 0.80 N 19 1 "C1'" D G 9 ? ? "O4'" D G 9 ? ? "C4'" D G 9 ? ? 105.24 109.70 -4.46 0.70 N 20 1 "C3'" D G 9 ? ? "C2'" D G 9 ? ? "C1'" D G 9 ? ? 96.64 101.30 -4.66 0.70 N 21 1 C5 D G 9 ? ? C6 D G 9 ? ? O6 D G 9 ? ? 124.89 128.60 -3.71 0.60 N 22 1 "C1'" D G 10 ? ? "O4'" D G 10 ? ? "C4'" D G 10 ? ? 105.20 109.70 -4.50 0.70 N 23 1 "C3'" D G 10 ? ? "C2'" D G 10 ? ? "C1'" D G 10 ? ? 96.97 101.30 -4.33 0.70 N 24 1 "C1'" D G 11 ? ? "O4'" D G 11 ? ? "C4'" D G 11 ? ? 104.97 109.70 -4.73 0.70 N 25 1 "C1'" D C 12 ? ? "O4'" D C 12 ? ? "C4'" D C 12 ? ? 105.07 109.70 -4.63 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 NA NA NA N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 435D 'double helix' 435D 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 B A 7 1_555 -0.049 -0.057 0.009 1.914 -0.013 0.491 1 A_U1:A14_B A 1 ? B 14 ? 20 1 1 A A 2 1_555 B U 6 1_555 0.253 -0.063 0.173 6.286 -12.646 1.392 2 A_A2:U13_B A 2 ? B 13 ? 20 1 1 A G 3 1_555 B C 5 1_555 -0.090 -0.187 0.053 1.172 -9.977 -3.159 3 A_G3:C12_B A 3 ? B 12 ? 19 1 1 A C 4 1_555 B G 4 1_555 0.203 -0.081 0.148 1.036 -16.005 2.514 4 A_C4:G11_B A 4 ? B 11 ? 19 1 1 A C 5 1_555 B G 3 1_555 0.128 -0.183 0.078 -2.021 -9.409 0.000 5 A_C5:G10_B A 5 ? B 10 ? 19 1 1 A C 6 1_555 B G 2 1_555 0.174 -0.097 0.142 -1.547 -12.436 1.395 6 A_C6:G9_B A 6 ? B 9 ? 19 1 1 A C 7 1_555 B G 1 1_555 0.036 -0.120 -0.166 2.951 -7.504 -1.236 7 A_C7:G8_B A 7 ? B 8 ? 19 1 1 C U 1 1_555 D A 7 1_555 -0.112 -0.089 0.289 -4.738 -0.266 0.382 8 C_U1:A14_D C 1 ? D 14 ? 20 1 1 C A 2 1_555 D U 6 1_555 0.017 -0.122 -0.077 -5.252 -13.715 1.509 9 C_A2:U13_D C 2 ? D 13 ? 20 1 1 C G 3 1_555 D C 5 1_555 -0.240 -0.229 -0.004 2.317 -11.371 -0.632 10 C_G3:C12_D C 3 ? D 12 ? 19 1 1 C C 4 1_555 D G 4 1_555 0.250 -0.068 -0.350 15.957 -17.559 3.096 11 C_C4:G11_D C 4 ? D 11 ? 19 1 1 C C 5 1_555 D G 3 1_555 0.134 -0.130 0.055 0.559 -11.422 -1.166 12 C_C5:G10_D C 5 ? D 10 ? 19 1 1 C C 6 1_555 D G 2 1_555 0.317 -0.242 -0.123 4.592 -9.105 -3.280 13 C_C6:G9_D C 6 ? D 9 ? 19 1 1 C C 7 1_555 D G 1 1_555 0.144 -0.075 -0.179 4.861 -3.948 0.379 14 C_C7:G8_D C 7 ? D 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 B A 7 1_555 A A 2 1_555 B U 6 1_555 0.334 -1.495 3.147 0.504 6.618 29.121 -4.159 -0.552 2.753 12.951 -0.986 29.852 1 AA_U1A2:U13A14_BB A 1 ? B 14 ? A 2 ? B 13 ? 1 A A 2 1_555 B U 6 1_555 A G 3 1_555 B C 5 1_555 -0.748 -1.357 3.363 -0.975 5.122 34.045 -3.092 1.111 3.151 8.685 1.653 34.431 2 AA_A2G3:C12U13_BB A 2 ? B 13 ? A 3 ? B 12 ? 1 A G 3 1_555 B C 5 1_555 A C 4 1_555 B G 4 1_555 0.809 -1.494 3.127 2.098 6.865 36.120 -3.226 -1.018 2.846 10.939 -3.343 36.803 3 AA_G3C4:G11C12_BB A 3 ? B 12 ? A 4 ? B 11 ? 1 A C 4 1_555 B G 4 1_555 A C 5 1_555 B G 3 1_555 -0.646 -1.570 3.349 -1.526 7.209 29.191 -4.459 0.941 2.916 14.024 2.968 30.087 4 AA_C4C5:G10G11_BB A 4 ? B 11 ? A 5 ? B 10 ? 1 A C 5 1_555 B G 3 1_555 A C 6 1_555 B G 2 1_555 0.604 -1.384 3.210 1.575 7.148 33.322 -3.431 -0.794 2.885 12.282 -2.706 34.094 5 AA_C5C6:G9G10_BB A 5 ? B 10 ? A 6 ? B 9 ? 1 A C 6 1_555 B G 2 1_555 A C 7 1_555 B G 1 1_555 -0.060 -1.934 3.110 2.064 4.643 29.279 -4.655 0.509 2.766 9.099 -4.045 29.707 6 AA_C6C7:G8G9_BB A 6 ? B 9 ? A 7 ? B 8 ? 1 A C 7 1_555 B G 1 1_555 C U 1 1_555 D A 7 1_555 0.231 -3.631 3.552 -2.808 1.872 -15.248 11.700 -1.645 3.943 -6.946 -10.418 -15.615 7 AC_C7U1:A14G8_DB A 7 ? B 8 ? C 1 ? D 14 ? 1 C U 1 1_555 D A 7 1_555 C A 2 1_555 D U 6 1_555 -0.081 -1.562 3.248 2.834 5.992 33.395 -3.578 0.568 2.915 10.302 -4.871 34.028 8 CC_U1A2:U13A14_DD C 1 ? D 14 ? C 2 ? D 13 ? 1 C A 2 1_555 D U 6 1_555 C G 3 1_555 D C 5 1_555 -0.537 -1.435 3.027 -2.193 7.565 28.879 -4.155 0.643 2.608 14.823 4.297 29.912 9 CC_A2G3:C12U13_DD C 2 ? D 13 ? C 3 ? D 12 ? 1 C G 3 1_555 D C 5 1_555 C C 4 1_555 D G 4 1_555 0.694 -1.180 2.847 4.157 5.681 34.452 -2.680 -0.619 2.687 9.469 -6.930 35.142 10 CC_G3C4:G11C12_DD C 3 ? D 12 ? C 4 ? D 11 ? 1 C C 4 1_555 D G 4 1_555 C C 5 1_555 D G 3 1_555 -0.699 -1.548 3.680 -2.747 9.233 32.756 -4.211 0.723 3.186 15.947 4.745 34.106 11 CC_C4C5:G10G11_DD C 4 ? D 11 ? C 5 ? D 10 ? 1 C C 5 1_555 D G 3 1_555 C C 6 1_555 D G 2 1_555 -0.329 -1.674 3.087 -0.417 6.006 31.272 -4.036 0.532 2.730 11.013 0.765 31.832 12 CC_C5C6:G9G10_DD C 5 ? D 10 ? C 6 ? D 9 ? 1 C C 6 1_555 D G 2 1_555 C C 7 1_555 D G 1 1_555 0.626 -1.853 3.289 2.553 6.447 31.252 -4.478 -0.694 2.899 11.787 -4.667 31.993 13 CC_C6C7:G8G9_DD C 6 ? D 9 ? C 7 ? D 8 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'CANONICAL A-FORM RNA DUPLEX' # _atom_sites.entry_id 435D _atom_sites.fract_transf_matrix[1][1] 0.037481 _atom_sites.fract_transf_matrix[1][2] 0.001086 _atom_sites.fract_transf_matrix[1][3] 0.010137 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037473 _atom_sites.fract_transf_matrix[2][3] 0.010177 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035096 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O P # loop_